CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1022 | T1022I | T1840I | nonsyn | aCt | aTt | 12922 | 12919 | 0.999768 | 5783-5785 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 12919 | 12922 | All | 0.002471 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 5047 | 5047 | AY.3 | 0.050199 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1378 | 1378 | AY.64 | 0.820238 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1136 | 1136 | B.1.1.7 | 0.001017 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 742 | 742 | AY.4 | 0.001155 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 600 | 600 | P.1.14 | 0.028681 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 414 | 414 | B.1.526 | 0.009731 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 257 | 257 | AY.103 | 0.001596 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 249 | 249 | B.1.617.2 | 0.000938 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 195 | 195 | B.1 | 0.001786 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 189 | 189 | B.1.429 | 0.004447 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 158 | 159 | B.1.2 | 0.001391 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 155 | 155 | B.1.600 | 0.906433 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 140 | 140 | AY.43 | 0.00062 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 131 | 131 | B.1.177 | 0.001725 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 112 | 112 | B.1.1.284 | 0.012029 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 100 | 100 | AY.44 | 0.000609 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 89 | 89 | AY.5.3 | 0.030027 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 79 | 79 | B.1.351 | 0.002348 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 71 | 71 | AY.25 | 0.000427 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 69 | 69 | AY.4.2 | 0.001497 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 50 | 51 | B.1.1 | 0.000907 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 51 | 51 | B.1.160 | 0.001591 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 49 | 49 | P.1 | 0.000772 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 47 | 47 | AY.117 | 0.003972 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 41 | 41 | AY.39 | 0.001013 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 40 | 40 | AY.119 | 0.001412 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 39 | 39 | A.1 | 0.010992 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 39 | 39 | B.1.1.519 | 0.001549 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 39 | 39 | B.1.170 | 0.168103 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 36 | 36 | B.1.258 | 0.002396 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 34 | 34 | B.1.346 | 0.044561 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 32 | 32 | AY.120 | 0.00119 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 32 | 32 | B.1.393 | 0.914286 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 31 | 31 | B.1.177.69 | 0.045994 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 29 | 29 | P.1.10 | 0.007815 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 26 | 26 | B.1.453 | 0.084142 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 23 | 23 | AY.102 | 0.00061 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 22 | 22 | AY.118 | 0.001378 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 22 | 22 | AY.20 | 0.000855 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 22 | 22 | AY.26 | 0.000623 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 21 | 21 | AY.61 | 0.0022 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 21 | 21 | B.1.177.81 | 0.003976 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 18 | 18 | AY.65 | 0.009595 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 18 | 18 | B.1.221 | 0.001279 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 18 | 18 | B.1.36.18 | 0.007563 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 18 | 18 | B.1.400 | 0.007722 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 18 | 18 | B.1.427 | 0.000909 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 16 | 16 | B.1.177.12 | 0.002427 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 16 | 16 | B.1.525 | 0.001811 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 15 | 15 | C.1 | 0.035885 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 14 | 14 | AY.30 | 0.00554 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 14 | 14 | AY.5 | 0.000289 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 14 | 14 | AY.9.1 | 0.001172 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 14 | 14 | B.1.1.318 | 0.004225 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 14 | 14 | B.1.177.61 | 0.608696 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 14 | 14 | B.1.177.73 | 0.007928 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 13 | 13 | AY.14 | 0.001144 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 13 | 13 | AY.47 | 0.000404 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 11 | 12 | AY.121 | 0.001488 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 11 | 11 | B.1.258.14 | 0.010784 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 11 | 11 | C.37 | 0.001277 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 10 | 10 | AY.113 | 0.001424 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 10 | 10 | AY.33 | 0.000668 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 10 | 10 | AY.46.6 | 0.000722 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 10 | 10 | B.1.596 | 0.000871 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 9 | 9 | AY.13 | 0.001449 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 9 | 9 | AY.29 | 0.000142 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 8 | 8 | AY.116 | 0.002294 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 8 | 8 | AY.79 | 0.009685 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 8 | 8 | B | 0.001022 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 8 | 8 | B.1.1.153 | 0.008762 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 8 | 8 | B.1.1.50 | 0.005431 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 8 | 8 | B.1.177.86 | 0.001468 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 8 | 8 | B.1.617.1 | 0.001032 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 7 | 7 | AY.100 | 0.000322 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 7 | 7 | AY.45 | 0.000852 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 7 | 7 | AY.55 | 0.006422 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 7 | 7 | AY.99.2 | 0.000645 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 7 | 7 | B.1.1.526 | 0.024823 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 7 | 7 | B.1.139 | 0.005132 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 7 | 7 | B.1.621 | 0.00062 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 6 | 6 | AY.106 | 0.002009 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 6 | 6 | AY.23 | 0.000418 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 6 | 6 | AY.24 | 0.002586 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 6 | 6 | AY.34 | 0.000582 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 6 | 6 | AY.46.4 | 0.000987 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 6 | 6 | AY.84 | 0.002625 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 6 | 6 | AY.98.1 | 0.000291 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 6 | 6 | B.1.1.282 | 0.069767 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 6 | 6 | B.1.159 | 0.073171 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 6 | 6 | B.1.575 | 0.00182 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 6 | 6 | B.1.637 | 0.000438 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 6 | 6 | R.1 | 0.00054 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 5 | 5 | AP.1 | 0.007508 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 5 | 5 | AY.92 | 0.001436 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 5 | 5 | B.1.1.28 | 0.001556 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 5 | 5 | B.1.160.16 | 0.004647 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 5 | 5 | B.1.177.33 | 0.008224 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 5 | 5 | B.1.243 | 0.000348 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 5 | 5 | B.1.258.17 | 0.00052 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 5 | 5 | B.1.36 | 0.00073 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 5 | 5 | B.1.524 | 0.007032 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 5 | 5 | P.1.15 | 0.001162 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 4 | 4 | A | 0.001548 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 4 | 4 | AY.1 | 0.001583 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 4 | 4 | AY.105 | 0.002572 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 4 | 4 | AY.12 | 0.001264 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 4 | 4 | AY.16.1 | 0.00188 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 4 | 4 | AY.37 | 0.001264 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 4 | 4 | AY.42 | 0.000161 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 4 | 4 | AY.46 | 0.000416 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 4 | 4 | AY.62 | 0.001743 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 4 | 4 | AY.67 | 0.001857 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 4 | 4 | B.1.1.372 | 0.002755 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 4 | 4 | B.1.1.389 | 0.024242 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 4 | 4 | B.1.1.397 | 0.009009 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 4 | 4 | B.1.466.2 | 0.001565 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 4 | 4 | C.38 | 0.032258 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 3 | 3 | AY.116.1 | 0.000934 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 3 | 3 | AY.3.1 | 0.000256 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 3 | 3 | AY.60 | 0.002814 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 3 | 3 | B.1.1.214 | 0.000166 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 3 | 3 | B.1.1.37 | 0.000579 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 3 | 3 | B.1.221.2 | 0.012048 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 3 | 3 | B.1.416 | 0.003807 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 3 | 3 | B.1.509 | 0.002597 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 3 | 3 | B.1.551 | 0.003871 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 3 | 3 | B.1.556 | 0.022556 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 3 | 3 | B.1.561 | 0.001191 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 3 | 3 | B.1.588 | 0.00273 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 3 | 3 | P.3 | 0.004785 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 3 | 3 | Q.3 | 0.000435 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 2 | 2 | AH.3 | 0.007605 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 2 | 2 | AY.104 | 0.003968 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 2 | 2 | AY.28 | 0.003781 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 2 | 2 | AY.82 | 0.002714 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 2 | 2 | AY.91 | 0.001461 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 2 | 2 | AY.93 | 0.000546 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 2 | 2 | AY.95 | 0.001522 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 2 | 2 | AY.96 | 0.004149 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 2 | 2 | B.1.1.172 | 0.036364 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 2 | 2 | B.1.1.326 | 0.003521 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 2 | 2 | B.1.1.420 | 0.002012 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 2 | 2 | B.1.143 | 0.042553 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 2 | 2 | B.1.160.32 | 0.008584 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 2 | 2 | B.1.177.20 | 0.003035 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 2 | 2 | B.1.177.72 | 0.00678 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 2 | 2 | B.1.177.75 | 0.002081 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 2 | 2 | B.1.177.77 | 0.001452 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 2 | 2 | B.1.177.79 | 0.004684 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 2 | 2 | B.1.260 | 0.006689 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 2 | 2 | B.1.375 | 0.001639 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 2 | 2 | B.1.516 | 0.003914 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 2 | 2 | B.1.560 | 0.009259 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 2 | 2 | B.1.575.1 | 0.004878 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 2 | 2 | B.1.590 | 0.009091 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 2 | 2 | C.32 | 0.046512 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 2 | 2 | P.1.1 | 0.000635 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 2 | 2 | P.1.6 | 0.003891 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | AY.22 | 0.002092 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.1.209 | 0.008929 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.1.356 | 0.008547 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.1.376 | 0.005952 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.1.62 | 0.027027 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.108 | 0.005814 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.110 | 0.004525 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.167 | 0.007812 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.177.42 | 0.000894 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.177.55 | 0.002331 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.177.74 | 0.015152 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.192 | 0.009259 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.335 | 0.010309 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.444 | 0.015873 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.465 | 0.003802 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.502 | 0.052632 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.541 | 0.004425 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.550 | 0.013699 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.552 | 0.015152 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.585 | 0.027778 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.606 | 0.006024 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.632 | 0.006711 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.1.638 | 0.052632 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | C.36.3.1 | 0.002717 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp3 | 1022 | T1022I | aCt | aTt | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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