CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1018

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31018Y1018YY1836YsyntaTtaC66266215771-5773
ORF1ab/nsp31018Y1018delY1836deldelTAT---171715771-5773
ORF1ab/nsp31018Y1018SY1836SnonsyntAttCt141415771-5773
ORF1ab/nsp31018Y1018DY1836DnonsynTatGat111115771-5773
ORF1ab/nsp31018Y1018HY1836HnonsynTatCat760.8571435771-5773
ORF1ab/nsp31018Y1018HY1836HnonsynTaTCaC710.1428575771-5773
ORF1ab/nsp31018Y1018XY1836XnonsyntaTtaA530.65771-5773
ORF1ab/nsp31018Y1018XY1836XnonsyntaTtaG520.45771-5773
ORF1ab/nsp31018Y1018CY1836CnonsyntAttGt4415771-5773
ORF1ab/nsp31018Y1018del1Y1836del1deltaTta-2215771-5773
ORF1ab/nsp31018Y1018del2Y1836del2delTAt--t2215771-5773
ORF1ab/nsp31018Y1018NY1836NnonsynTaTAaC1115771-5773

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31018Y1018YtaTtaC662662All0.000127
ORF1ab/nsp31018Y1018YtaTtaC207207AY.490.661342
ORF1ab/nsp31018Y1018YtaTtaC7171B.1.1.70.000064
ORF1ab/nsp31018Y1018YtaTtaC5050B.1.258.150.943396
ORF1ab/nsp31018Y1018YtaTtaC3939B.1.5960.003398
ORF1ab/nsp31018Y1018YtaTtaC3030AY.250.00018
ORF1ab/nsp31018Y1018YtaTtaC2727B.1.1.5061
ORF1ab/nsp31018Y1018YtaTtaC2727B.1.4290.000635
ORF1ab/nsp31018Y1018YtaTtaC2626B.1.617.20.000098
ORF1ab/nsp31018Y1018YtaTtaC2424AY.40.000037
ORF1ab/nsp31018Y1018YtaTtaC2121B.1.20.000185
ORF1ab/nsp31018Y1018YtaTtaC1818B.1.2580.001198
ORF1ab/nsp31018Y1018delTAT---1717All0.000003
ORF1ab/nsp31018Y1018StAttCt1414All0.000003
ORF1ab/nsp31018Y1018DTatGat1111All0.000002
ORF1ab/nsp31018Y1018YtaTtaC1010AY.440.000061
ORF1ab/nsp31018Y1018YtaTtaC99AY.1030.000056
ORF1ab/nsp31018Y1018YtaTtaC99AY.430.00004
ORF1ab/nsp31018Y1018YtaTtaC99AY.540.000858
ORF1ab/nsp31018Y1018YtaTtaC99B.1.1.1760.003954
ORF1ab/nsp31018Y1018YtaTtaC99B.1.177.810.001704
ORF1ab/nsp31018Y1018YtaTtaC88B.1.1770.000105
ORF1ab/nsp31018Y1018HTatCat67All0.000001
ORF1ab/nsp31018Y1018HTaTCaC17All0
ORF1ab/nsp31018Y1018YtaTtaC66AY.1020.000159
ORF1ab/nsp31018Y1018DTatGat66B.1.1.70.000005
ORF1ab/nsp31018Y1018XtaTtaA35All0.000001
ORF1ab/nsp31018Y1018XtaTtaG25All0
ORF1ab/nsp31018Y1018DTatGat55B.1.5250.000566
ORF1ab/nsp31018Y1018CtAttGt44All0.000001
ORF1ab/nsp31018Y1018YtaTtaC44AY.1010.001962
ORF1ab/nsp31018Y1018YtaTtaC44AY.30.00004
ORF1ab/nsp31018Y1018delTAT---44B.1.1.70.000004
ORF1ab/nsp31018Y1018StAttCt44B.1.1600.000125
ORF1ab/nsp31018Y1018YtaTtaC33B.1.10.000054
ORF1ab/nsp31018Y1018YtaTtaC33B.1.1190.031579
ORF1ab/nsp31018Y1018del1taTta-22All0
ORF1ab/nsp31018Y1018del2TAt--t22All0
ORF1ab/nsp31018Y1018YtaTtaC22AY.1160.000574
ORF1ab/nsp31018Y1018YtaTtaC22AY.1200.000074
ORF1ab/nsp31018Y1018YtaTtaC22AY.130.000322
ORF1ab/nsp31018Y1018YtaTtaC22AY.220.004184
ORF1ab/nsp31018Y1018del1taTta-22B.10.000018
ORF1ab/nsp31018Y1018YtaTtaC22B.10.000018
ORF1ab/nsp31018Y1018HTatCat22B.10.000018
ORF1ab/nsp31018Y1018YtaTtaC22B.1.1.2140.000111
ORF1ab/nsp31018Y1018StAttCt22B.1.1770.000026
ORF1ab/nsp31018Y1018YtaTtaC22B.1.177.860.000367
ORF1ab/nsp31018Y1018delTAT---22B.1.360.000292
ORF1ab/nsp31018Y1018YtaTtaC22B.1.466.20.000782
ORF1ab/nsp31018Y1018YtaTtaC22P.10.000032
ORF1ab/nsp31018Y1018delTAT---11A.2.20.001689
ORF1ab/nsp31018Y1018HTatCat11AH.30.003802
ORF1ab/nsp31018Y1018NTaTAaC11All0
ORF1ab/nsp31018Y1018YtaTtaC11AY.1140.000231
ORF1ab/nsp31018Y1018YtaTtaC11AY.1170.000085
ORF1ab/nsp31018Y1018YtaTtaC11AY.1180.000063
ORF1ab/nsp31018Y1018HTaTCaC11AY.1190.000035
ORF1ab/nsp31018Y1018YtaTtaC11AY.1190.000035
ORF1ab/nsp31018Y1018CtAttGt11AY.1190.000035
ORF1ab/nsp31018Y1018YtaTtaC11AY.230.00007
ORF1ab/nsp31018Y1018YtaTtaC11AY.390.000025
ORF1ab/nsp31018Y1018YtaTtaC11AY.460.000104
ORF1ab/nsp31018Y1018YtaTtaC11AY.46.20.000635
ORF1ab/nsp31018Y1018YtaTtaC11AY.46.40.000165
ORF1ab/nsp31018Y1018YtaTtaC11AY.46.60.000072
ORF1ab/nsp31018Y1018XtaTtaG11AY.610.000105
ORF1ab/nsp31018Y1018YtaTtaC11AY.610.000105
ORF1ab/nsp31018Y1018CtAttGt11AY.620.000436
ORF1ab/nsp31018Y1018YtaTtaC11AY.650.000533
ORF1ab/nsp31018Y1018delTAT---11AY.850.000427
ORF1ab/nsp31018Y1018delTAT---11B0.000128
ORF1ab/nsp31018Y1018StAttCt11B.1.10.000018
ORF1ab/nsp31018Y1018delTAT---11B.1.1.1390.022727
ORF1ab/nsp31018Y1018delTAT---11B.1.1.1420.017544
ORF1ab/nsp31018Y1018StAttCt11B.1.1.390.00051
ORF1ab/nsp31018Y1018YtaTtaC11B.1.1.510.001718
ORF1ab/nsp31018Y1018CtAttGt11B.1.1.5190.00004
ORF1ab/nsp31018Y1018YtaTtaC11B.1.1.5190.00004
ORF1ab/nsp31018Y1018delTAT---11B.1.1.630.000386
ORF1ab/nsp31018Y1018HTatCat11B.1.1.70.000001
ORF1ab/nsp31018Y1018StAttCt11B.1.160.160.000929
ORF1ab/nsp31018Y1018StAttCt11B.1.160.300.002976
ORF1ab/nsp31018Y1018XtaTtaA11B.1.1770.000013
ORF1ab/nsp31018Y1018CtAttGt11B.1.1770.000013
ORF1ab/nsp31018Y1018XtaTtaA11B.1.177.320.00135
ORF1ab/nsp31018Y1018StAttCt11B.1.177.430.001477
ORF1ab/nsp31018Y1018StAttCt11B.1.177.440.000519
ORF1ab/nsp31018Y1018YtaTtaC11B.1.177.540.000606
ORF1ab/nsp31018Y1018XtaTtaA11B.1.20.000009
ORF1ab/nsp31018Y1018HTatCat11B.1.20.000009
ORF1ab/nsp31018Y1018del2TAt--t11B.1.20.000009
ORF1ab/nsp31018Y1018StAttCt11B.1.2210.000071
ORF1ab/nsp31018Y1018delTAT---11B.1.2580.000067
ORF1ab/nsp31018Y1018YtaTtaC11B.1.3510.00003
ORF1ab/nsp31018Y1018YtaTtaC11B.1.36.240.006173
ORF1ab/nsp31018Y1018XtaTtaG11B.1.4160.001269
ORF1ab/nsp31018Y1018YtaTtaC11B.1.5260.000024
ORF1ab/nsp31018Y1018del2TAt--t11B.1.5960.000087
ORF1ab/nsp31018Y1018delTAT---11B.1.617.20.000004
ORF1ab/nsp31018Y1018HTatCat11B.1.617.20.000004
ORF1ab/nsp31018Y1018YtaTtaC11B.1.6370.000073
ORF1ab/nsp31018Y1018delTAT---11B.150.017544
ORF1ab/nsp31018Y1018delTAT---11B.340.013699
ORF1ab/nsp31018Y1018StAttCt11C.160.00106
ORF1ab/nsp31018Y1018NTaTAaC11C.350.000774
ORF1ab/nsp31018Y1018delTAT---11C.370.000116
ORF1ab/nsp31018Y1018YtaTtaC11P.1.140.000048
ORF1ab/nsp31018Y1018YtaTtaC11P.1.150.000232