CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1010

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31010T1010AT1828AnonsynActGct1797179715747-5749
ORF1ab/nsp31010T1010TT1828TsynacTacC6706390.9537315747-5749
ORF1ab/nsp31010T1010TT1828TsynacTacG670160.02388065747-5749
ORF1ab/nsp31010T1010TT1828TsynacTacA670150.02238815747-5749
ORF1ab/nsp31010T1010IT1828InonsynaCtaTt5265190.9866925747-5749
ORF1ab/nsp31010T1010IT1828InonsynaCTaTC52650.00950575747-5749
ORF1ab/nsp31010T1010IT1828InonsynaCTaTA52620.003802285747-5749
ORF1ab/nsp31010T1010NT1828NnonsynaCtaAt3293280.996965747-5749
ORF1ab/nsp31010T1010NT1828NnonsynaCTaAC32910.003039515747-5749
ORF1ab/nsp31010T1010delT1828deldelACT---181815747-5749
ORF1ab/nsp31010T1010ST1828SnonsynActTct420.55747-5749
ORF1ab/nsp31010T1010ST1828SnonsynaCtaGt420.55747-5749
ORF1ab/nsp31010T1010LT1828LnonsynACTCTA210.55747-5749
ORF1ab/nsp31010T1010LT1828LnonsynACTCTC210.55747-5749
ORF1ab/nsp31010T1010KT1828KnonsynaCTaAA1115747-5749
ORF1ab/nsp31010T1010VT1828VnonsynACTGTC1115747-5749
ORF1ab/nsp31010T1010del1T1828del1delaCta-t1115747-5749
ORF1ab/nsp31010T1010HT1828HnonsynACTCAC1115747-5749
ORF1ab/nsp31010T1010QT1828QnonsynACTCAA1115747-5749

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31010T1010AActGct17971797All0.000344
ORF1ab/nsp31010T1010AActGct969969B.1.3750.794262
ORF1ab/nsp31010T1010TacTacC639670All0.000122
ORF1ab/nsp31010T1010TacTacG16670All0.000003
ORF1ab/nsp31010T1010TacTacA15670All0.000003
ORF1ab/nsp31010T1010AActGct642642B.1.1.70.000575
ORF1ab/nsp31010T1010TacTacC560560B.1.6370.040921
ORF1ab/nsp31010T1010IaCtaTt519526All0.000099
ORF1ab/nsp31010T1010IaCTaTC5526All0.000001
ORF1ab/nsp31010T1010IaCTaTA2526All0
ORF1ab/nsp31010T1010NaCtaAt328329All0.000063
ORF1ab/nsp31010T1010NaCTaAC1329All0
ORF1ab/nsp31010T1010NaCtaAt128128B.1.4290.003012
ORF1ab/nsp31010T1010IaCtaTt113113B.1.4290.002659
ORF1ab/nsp31010T1010IaCtaTt9494AY.40.000146
ORF1ab/nsp31010T1010AActGct7575AY.250.000451
ORF1ab/nsp31010T1010NaCtaAt7272AY.40.000112
ORF1ab/nsp31010T1010IaCtaTt4444B.1.1.3680.135802
ORF1ab/nsp31010T1010IaCtaTt4141B.1.1.5210.219251
ORF1ab/nsp31010T1010AActGct2727B.1.36.210.058315
ORF1ab/nsp31010T1010IaCtaTt2525B.1.1.70.000022
ORF1ab/nsp31010T1010NaCtaAt2222B.1.1.70.00002
ORF1ab/nsp31010T1010AActGct2121B.10.000192
ORF1ab/nsp31010T1010NaCtaAt2020B.1.617.20.000075
ORF1ab/nsp31010T1010TacTacC819B.1.1.70.000007
ORF1ab/nsp31010T1010TacTacA719B.1.1.70.000006
ORF1ab/nsp31010T1010TacTacG419B.1.1.70.000004
ORF1ab/nsp31010T1010delACT---1818All0.000003
ORF1ab/nsp31010T1010IaCtaTt1616B.1.160.300.047619
ORF1ab/nsp31010T1010IaCtaTt1616B.1.3510.000476
ORF1ab/nsp31010T1010IaCtaTt1515B.10.000137
ORF1ab/nsp31010T1010NaCtaAt1414B.1.1770.000184
ORF1ab/nsp31010T1010TacTacC1313P.10.000205
ORF1ab/nsp31010T1010NaCtaAt1212AY.1030.000075
ORF1ab/nsp31010T1010IaCtaTt1212B.1.1.5190.000477
ORF1ab/nsp31010T1010IaCtaTt1212B.1.5960.001046
ORF1ab/nsp31010T1010TacTacC1212B.1.617.20.000045
ORF1ab/nsp31010T1010AActGct1111B.1.3510.000327
ORF1ab/nsp31010T1010AActGct1010AY.430.000044
ORF1ab/nsp31010T1010IaCtaTt1010B.1.36.160.014245
ORF1ab/nsp31010T1010NaCtaAt1010B.1.5250.001132
ORF1ab/nsp31010T1010IaCtaTt1010B.1.5650.008104
ORF1ab/nsp31010T1010TacTacC69B.10.000055
ORF1ab/nsp31010T1010TacTacG29B.10.000018
ORF1ab/nsp31010T1010TacTacA19B.10.000009
ORF1ab/nsp31010T1010IaCtaTt77AY.1030.000043
ORF1ab/nsp31010T1010IaCtaTt77B.1.1.2190.035
ORF1ab/nsp31010T1010TacTacC77B.1.1.250.00398
ORF1ab/nsp31010T1010IaCtaTt66AY.430.000027
ORF1ab/nsp31010T1010NaCtaAt66AY.430.000027
ORF1ab/nsp31010T1010delACT---66B.1.1.70.000005
ORF1ab/nsp31010T1010IaCtaTt55AY.790.006053
ORF1ab/nsp31010T1010IaCtaTt55B.1.10.000091
ORF1ab/nsp31010T1010IaCtaTt55B.1.1600.000156
ORF1ab/nsp31010T1010TacTacC45B.1.20.000035
ORF1ab/nsp31010T1010TacTacG15B.1.20.000009
ORF1ab/nsp31010T1010TacTacC55B.1.36.290.002587
ORF1ab/nsp31010T1010NaCtaAt55B.1.4270.000252
ORF1ab/nsp31010T1010AActGct55B.1.617.20.000019
ORF1ab/nsp31010T1010SaCtaGt24All0
ORF1ab/nsp31010T1010SActTct24All0
ORF1ab/nsp31010T1010TacTacC44AY.1030.000025
ORF1ab/nsp31010T1010IaCtaTt44AY.390.000099
ORF1ab/nsp31010T1010AActGct44AY.40.000006
ORF1ab/nsp31010T1010TacTacC44AY.430.000018
ORF1ab/nsp31010T1010IaCtaTt44AY.50.000083
ORF1ab/nsp31010T1010NaCtaAt44B.1.1.2840.00043
ORF1ab/nsp31010T1010NaCtaAt44B.1.20.000035
ORF1ab/nsp31010T1010AActGct44B.1.3670.00317
ORF1ab/nsp31010T1010AActGct44B.1.5650.003241
ORF1ab/nsp31010T1010IaCtaTt44B.1.617.20.000015
ORF1ab/nsp31010T1010IaCtaTt44B.1.6370.000292
ORF1ab/nsp31010T1010IaCTaTC24P.10.000032
ORF1ab/nsp31010T1010IaCtaTt24P.10.000032
ORF1ab/nsp31010T1010AActGct33AY.1030.000019
ORF1ab/nsp31010T1010NaCtaAt33AY.1070.001398
ORF1ab/nsp31010T1010IaCtaTt33AY.230.000209
ORF1ab/nsp31010T1010TacTacC23AY.3.10.000171
ORF1ab/nsp31010T1010TacTacA13AY.3.10.000085
ORF1ab/nsp31010T1010NaCtaAt33AY.380.001498
ORF1ab/nsp31010T1010TacTacC23AY.40.000003
ORF1ab/nsp31010T1010TacTacG13AY.40.000002
ORF1ab/nsp31010T1010AActGct33AY.460.000312
ORF1ab/nsp31010T1010IaCtaTt33AY.460.000312
ORF1ab/nsp31010T1010IaCtaTt33B.1.20.000026
ORF1ab/nsp31010T1010IaCtaTt33P.1.140.000143
ORF1ab/nsp31010T1010LACTCTC12All0
ORF1ab/nsp31010T1010LACTCTA12All0
ORF1ab/nsp31010T1010IaCTaTC22AY.1010.000981
ORF1ab/nsp31010T1010NaCtaAt22AY.1020.000053
ORF1ab/nsp31010T1010IaCtaTt22AY.1020.000053
ORF1ab/nsp31010T1010NaCtaAt22AY.250.000012
ORF1ab/nsp31010T1010IaCtaTt22AY.250.000012
ORF1ab/nsp31010T1010IaCtaTt22AY.30.00002
ORF1ab/nsp31010T1010IaCtaTt22AY.440.000012
ORF1ab/nsp31010T1010TacTacG22AY.460.000208
ORF1ab/nsp31010T1010TacTacG22AY.470.000062
ORF1ab/nsp31010T1010SaCtaGt22B.10.000018
ORF1ab/nsp31010T1010IaCtaTt22B.1.1.2140.000111
ORF1ab/nsp31010T1010IaCtaTt22B.1.1.330.000842
ORF1ab/nsp31010T1010AActGct22B.1.20.000018
ORF1ab/nsp31010T1010delACT---22B.1.360.000292
ORF1ab/nsp31010T1010AActGct22B.1.4270.000101
ORF1ab/nsp31010T1010IaCtaTt22B.1.5250.000226
ORF1ab/nsp31010T1010NaCtaAt22B.1.5260.000047
ORF1ab/nsp31010T1010IaCtaTt22B.1.6090.000959
ORF1ab/nsp31010T1010IaCtaTt22B.1.621.10.001012
ORF1ab/nsp31010T1010LACTCTA12P.1.150.000232
ORF1ab/nsp31010T1010LACTCTC12P.1.150.000232
ORF1ab/nsp31010T1010IaCTaTC12P.1.150.000232
ORF1ab/nsp31010T1010IaCTaTA12P.1.150.000232
ORF1ab/nsp31010T1010TacTacG22P.20.000373
ORF1ab/nsp31010T1010NaCtaAt110.055556
ORF1ab/nsp31010T1010delACT---11A.2.20.001689
ORF1ab/nsp31010T1010QACTCAA11All0
ORF1ab/nsp31010T1010KaCTaAA11All0
ORF1ab/nsp31010T1010VACTGTC11All0
ORF1ab/nsp31010T1010del1aCta-t11All0
ORF1ab/nsp31010T1010HACTCAC11All0
ORF1ab/nsp31010T1010IaCtaTt11AY.100.00053
ORF1ab/nsp31010T1010AActGct11AY.1020.000027
ORF1ab/nsp31010T1010IaCtaTt11AY.1070.000466
ORF1ab/nsp31010T1010AActGct11AY.140.000088
ORF1ab/nsp31010T1010NaCtaAt11AY.190.00114
ORF1ab/nsp31010T1010NaCtaAt11AY.23.10.000417
ORF1ab/nsp31010T1010TacTacG11AY.240.000431
ORF1ab/nsp31010T1010IaCtaTt11AY.260.000028
ORF1ab/nsp31010T1010IaCtaTt11AY.270.000065
ORF1ab/nsp31010T1010TacTacC11AY.30.00001
ORF1ab/nsp31010T1010TacTacC11AY.330.000067
ORF1ab/nsp31010T1010NaCtaAt11AY.330.000067
ORF1ab/nsp31010T1010NaCtaAt11AY.34.10.00051
ORF1ab/nsp31010T1010AActGct11AY.390.000025
ORF1ab/nsp31010T1010TacTacA11AY.390.000025
ORF1ab/nsp31010T1010NaCtaAt11AY.39.20.001541
ORF1ab/nsp31010T1010IaCtaTt11AY.4.20.000022
ORF1ab/nsp31010T1010NaCtaAt11AY.4.50.000107
ORF1ab/nsp31010T1010NaCtaAt11AY.420.00004
ORF1ab/nsp31010T1010TacTacA11AY.420.00004
ORF1ab/nsp31010T1010NaCtaAt11AY.440.000006
ORF1ab/nsp31010T1010AActGct11AY.450.000122
ORF1ab/nsp31010T1010NaCtaAt11AY.460.000104
ORF1ab/nsp31010T1010IaCtaTt11AY.470.000031
ORF1ab/nsp31010T1010del1aCta-t11AY.480.000465
ORF1ab/nsp31010T1010IaCtaTt11AY.540.000095
ORF1ab/nsp31010T1010TacTacC11AY.610.000105
ORF1ab/nsp31010T1010IaCTaTA11AY.620.000436
ORF1ab/nsp31010T1010IaCtaTt11AY.680.000274
ORF1ab/nsp31010T1010TacTacA11AY.690.000187
ORF1ab/nsp31010T1010IaCtaTt11AY.740.000116
ORF1ab/nsp31010T1010delACT---11AY.750.000056
ORF1ab/nsp31010T1010TacTacC11AY.75.10.00018
ORF1ab/nsp31010T1010delACT---11AY.850.000427
ORF1ab/nsp31010T1010AActGct11AY.90.000068
ORF1ab/nsp31010T1010AActGct11AY.98.10.000048
ORF1ab/nsp31010T1010AActGct11AY.99.20.000092
ORF1ab/nsp31010T1010delACT---11B0.000128
ORF1ab/nsp31010T1010IaCtaTt11B0.000128
ORF1ab/nsp31010T1010NaCtaAt11B.10.000009
ORF1ab/nsp31010T1010TacTacC11B.1.10.000018
ORF1ab/nsp31010T1010AActGct11B.1.10.000018
ORF1ab/nsp31010T1010AActGct11B.1.1.100.001115
ORF1ab/nsp31010T1010delACT---11B.1.1.1390.022727
ORF1ab/nsp31010T1010delACT---11B.1.1.1420.017544
ORF1ab/nsp31010T1010IaCtaTt11B.1.1.2290.005747
ORF1ab/nsp31010T1010IaCtaTt11B.1.1.250.000569
ORF1ab/nsp31010T1010IaCtaTt11B.1.1.2540.011236
ORF1ab/nsp31010T1010TacTacA11B.1.1.3060.000438
ORF1ab/nsp31010T1010IaCtaTt11B.1.1.3440.010753
ORF1ab/nsp31010T1010TacTacA11B.1.1.5190.00004
ORF1ab/nsp31010T1010NaCtaAt11B.1.1.5190.00004
ORF1ab/nsp31010T1010TacTacC11B.1.1770.000013
ORF1ab/nsp31010T1010IaCtaTt11B.1.177.730.000566
ORF1ab/nsp31010T1010NaCtaAt11B.1.2210.000071
ORF1ab/nsp31010T1010IaCtaTt11B.1.2430.00007
ORF1ab/nsp31010T1010IaCtaTt11B.1.2580.000067
ORF1ab/nsp31010T1010IaCtaTt11B.1.3240.001605
ORF1ab/nsp31010T1010TacTacC11B.1.3510.00003
ORF1ab/nsp31010T1010IaCtaTt11B.1.351.30.000876
ORF1ab/nsp31010T1010AActGct11B.1.3700.008
ORF1ab/nsp31010T1010NaCtaAt11B.1.3770.004566
ORF1ab/nsp31010T1010NaCtaAt11B.1.3960.000706
ORF1ab/nsp31010T1010TacTacC11B.1.4090.000781
ORF1ab/nsp31010T1010TacTacC11B.1.4270.00005
ORF1ab/nsp31010T1010IaCtaTt11B.1.4270.00005
ORF1ab/nsp31010T1010IaCtaTt11B.1.4970.000315
ORF1ab/nsp31010T1010AActGct11B.1.5170.000427
ORF1ab/nsp31010T1010TacTacA11B.1.5250.000113
ORF1ab/nsp31010T1010IaCtaTt11B.1.5260.000024
ORF1ab/nsp31010T1010TacTacC11B.1.5260.000024
ORF1ab/nsp31010T1010AActGct11B.1.5260.000024
ORF1ab/nsp31010T1010TacTacG11B.1.5610.000397
ORF1ab/nsp31010T1010NaCtaAt11B.1.5750.000303
ORF1ab/nsp31010T1010NaCtaAt11B.1.5960.000087
ORF1ab/nsp31010T1010AActGct11B.1.5960.000087
ORF1ab/nsp31010T1010delACT---11B.1.617.20.000004
ORF1ab/nsp31010T1010SActTct11B.1.617.20.000004
ORF1ab/nsp31010T1010VACTGTC11B.1.617.20.000004
ORF1ab/nsp31010T1010delACT---11B.150.017544
ORF1ab/nsp31010T1010delACT---11B.340.013699
ORF1ab/nsp31010T1010IaCtaTt11C.350.000774
ORF1ab/nsp31010T1010delACT---11C.370.000116
ORF1ab/nsp31010T1010IaCtaTt11D.20.000075
ORF1ab/nsp31010T1010TacTacC11D.20.000075
ORF1ab/nsp31010T1010SActTct11D.20.000075
ORF1ab/nsp31010T1010TacTacC11D.30.005917
ORF1ab/nsp31010T1010NaCtaAt11L.10.001905
ORF1ab/nsp31010T1010NaCtaAt11P.10.000016
ORF1ab/nsp31010T1010IaCtaTt11P.1.100.000269
ORF1ab/nsp31010T1010IaCtaTt11P.1.120.000484
ORF1ab/nsp31010T1010AActGct11P.1.150.000232
ORF1ab/nsp31010T1010HACTCAC11P.1.150.000232
ORF1ab/nsp31010T1010QACTCAA11P.1.150.000232
ORF1ab/nsp31010T1010NaCTaAC11P.1.150.000232
ORF1ab/nsp31010T1010KaCTaAA11P.1.150.000232
ORF1ab/nsp31010T1010AActGct11P.20.000187
ORF1ab/nsp31010T1010IaCtaTt11Q.10.000126
ORF1ab/nsp31010T1010IaCtaTt11R.10.00009