CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1004 | T1004I | T1822I | nonsyn | aCt | aTt | 11596 | 11596 | 1 | 5729-5731 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 11596 | 11596 | All | 0.002218 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1442 | 1442 | B.1.1.7 | 0.001291 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1344 | 1344 | B.1.128 | 0.853875 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1169 | 1169 | AY.50 | 0.934452 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 609 | 609 | AY.25 | 0.003663 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 562 | 562 | AY.84 | 0.245844 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 546 | 546 | B.1.617.2 | 0.002056 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 502 | 502 | AY.4 | 0.000781 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 416 | 416 | B.1.2 | 0.003663 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 406 | 406 | B.1.625 | 0.955294 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 371 | 371 | AY.43 | 0.001644 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 307 | 307 | B.1.36.9 | 0.987138 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 182 | 182 | AY.54 | 0.017353 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 181 | 181 | B.1.1.519 | 0.007188 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 181 | 181 | P.1 | 0.002851 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 161 | 161 | AY.44 | 0.00098 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 152 | 152 | B.1.177 | 0.002001 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 150 | 150 | B.1.1 | 0.002721 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 146 | 146 | B.1 | 0.001337 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 142 | 142 | AY.34.1 | 0.072412 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 140 | 140 | AY.103 | 0.000869 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 119 | 119 | B.1.575 | 0.036104 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 118 | 118 | B.1.221 | 0.008382 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 116 | 116 | AY.102 | 0.003076 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 91 | 91 | AY.20 | 0.003537 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 88 | 88 | AY.47 | 0.002737 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 87 | 87 | AY.3 | 0.000865 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 70 | 70 | C.37 | 0.008124 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 65 | 65 | B.1.258.17 | 0.006758 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 63 | 63 | AY.39 | 0.001557 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 60 | 60 | B.1.526 | 0.00141 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 53 | 53 | B.1.160.24 | 0.234513 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 50 | 50 | B.1.1.296 | 0.909091 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 48 | 48 | AY.75.1 | 0.008655 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 40 | 40 | B.1.177.80 | 0.076482 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 39 | 39 | AY.9.2 | 0.001432 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 39 | 39 | B.1.637 | 0.00285 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 35 | 35 | AY.29 | 0.000552 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 34 | 34 | B.1.349 | 0.024303 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 34 | 34 | Q.1 | 0.004295 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 33 | 33 | B.1.160 | 0.001029 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 31 | 31 | AY.39.1 | 0.001228 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 30 | 30 | B.1.1.63 | 0.011574 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 29 | 29 | B.1.525 | 0.003282 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 26 | 26 | AY.101 | 0.012751 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 23 | 23 | B.1.177.21 | 0.001759 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 22 | 22 | B.1.234 | 0.002903 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 21 | 21 | B.1.429 | 0.000494 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 20 | 20 | AY.111 | 0.003663 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 20 | 20 | AY.120 | 0.000744 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 20 | 20 | B.1.177.60 | 0.004369 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 18 | 18 | B.1.631 | 0.060606 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 17 | 17 | AY.99.2 | 0.001567 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 17 | 17 | B.1.1.176 | 0.007469 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 17 | 17 | B.1.177.12 | 0.002579 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 17 | 17 | B.1.351.2 | 0.005144 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 16 | 16 | AY.23 | 0.001116 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 16 | 16 | AY.42 | 0.000644 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 15 | 15 | AY.9.1 | 0.001256 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 14 | 14 | AY.32 | 0.007455 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 14 | 14 | B.1.306 | 0.08 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 13 | 13 | AY.100 | 0.000598 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 13 | 13 | B.1.206 | 0.010604 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 13 | 13 | C.18 | 0.033679 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 12 | 12 | AY.119 | 0.000424 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 12 | 12 | AY.121 | 0.001624 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 12 | 12 | AY.26 | 0.00034 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 12 | 12 | B.1.177.4 | 0.002533 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 12 | 12 | B.1.236 | 0.024641 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 12 | 12 | B.1.391 | 0.013529 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 12 | 12 | B.1.595 | 0.003132 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 11 | 11 | AY.28 | 0.020794 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 11 | 11 | AY.61 | 0.001153 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 11 | 11 | AY.9 | 0.000744 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 11 | 11 | B.1.351 | 0.000327 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 10 | 10 | AY.118 | 0.000626 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 10 | 10 | AY.33 | 0.000668 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 10 | 10 | AY.34 | 0.00097 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 10 | 10 | AY.46.6 | 0.000722 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 10 | 10 | AY.49 | 0.031949 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 10 | 10 | AY.5 | 0.000206 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 10 | 10 | AY.74 | 0.001156 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 10 | 10 | B.1.258.3 | 0.01675 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 10 | 10 | P.2 | 0.001866 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 10 | 10 | Q.8 | 0.001649 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 9 | 9 | AA.6 | 0.145161 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 9 | 9 | AY.4.5 | 0.000967 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 9 | 9 | AY.45 | 0.001095 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 9 | 9 | AY.5.3 | 0.003036 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 9 | 9 | B.1.621 | 0.000797 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 9 | 9 | P.1.12 | 0.004356 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 8 | 8 | AY.75 | 0.000448 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 8 | 8 | B.1.243 | 0.000557 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 8 | 8 | B.1.258 | 0.000532 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 8 | 8 | B.1.36 | 0.001167 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 7 | 7 | AY.6 | 0.000288 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 7 | 7 | AY.99 | 0.007345 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 7 | 7 | B | 0.000895 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 7 | 7 | B.1.1.25 | 0.00398 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 7 | 7 | B.1.1.391 | 0.059829 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 7 | 7 | B.1.177.86 | 0.001284 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 7 | 7 | B.1.36.26 | 0.02 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 7 | 7 | B.1.427 | 0.000353 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 6 | 6 | A.2.5 | 0.002994 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 6 | 6 | AY.117 | 0.000507 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 6 | 6 | AY.16.1 | 0.00282 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 6 | 6 | AY.4.2 | 0.00013 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 6 | 6 | AY.46.4 | 0.000987 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 6 | 6 | AY.98.1 | 0.000291 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 6 | 6 | B.1.1.243 | 0.02449 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 6 | 6 | B.1.1.376 | 0.035714 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 6 | 6 | B.1.466.2 | 0.002347 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 6 | 6 | C.16 | 0.006363 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 6 | 6 | P.1.17 | 0.000971 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 5 | 5 | AY.113 | 0.000712 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 5 | 5 | AY.58 | 0.004537 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 5 | 5 | AY.91 | 0.003652 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 5 | 5 | B.1.1.28 | 0.001556 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 5 | 5 | B.1.596 | 0.000436 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 5 | 5 | D.5 | 0.024876 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 5 | 5 | P.1.10 | 0.001347 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 4 | 4 | A.1 | 0.001127 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 4 | 4 | AY.62 | 0.001743 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 4 | 4 | B.1.1.220 | 0.007435 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 4 | 4 | B.1.1.222 | 0.000816 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 4 | 4 | B.1.177.7 | 0.000659 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 4 | 4 | B.1.36.17 | 0.001976 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 4 | 4 | B.1.471 | 0.010929 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 4 | 4 | B.1.617.1 | 0.000516 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 4 | 4 | P.1.16 | 0.001496 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 3 | 3 | AY.106 | 0.001005 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 3 | 3 | AY.55 | 0.002752 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 3 | 3 | AY.59 | 0.001589 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 3 | 3 | AY.7 | 0.000588 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 3 | 3 | AY.77 | 0.003382 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 3 | 3 | AY.92 | 0.000862 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 3 | 3 | B.1.1.280 | 0.009259 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 3 | 3 | B.1.177.52 | 0.005272 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 3 | 3 | B.1.258.4 | 0.010345 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 3 | 3 | B.1.289 | 0.007979 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 3 | 3 | B.1.36.16 | 0.004274 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 3 | 3 | B.1.367 | 0.002377 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 3 | 3 | B.1.438.1 | 0.000322 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 3 | 3 | B.1.540 | 0.029126 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 3 | 3 | B.1.588 | 0.00273 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 3 | 3 | C.35 | 0.002322 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | A.27 | 0.003311 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | AY.29.1 | 0.000441 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | AY.41 | 0.000588 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | AY.48 | 0.00093 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | AY.64 | 0.00119 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | AY.76 | 0.009662 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | AY.89 | 0.009804 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | B.1.1.10 | 0.00223 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | B.1.1.161 | 0.007067 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | B.1.1.266 | 0.02439 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | B.1.1.269 | 0.002706 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | B.1.1.316 | 0.00185 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | B.1.1.371 | 0.020833 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | B.1.1.448 | 0.004065 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | B.1.1.486 | 0.003155 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | B.1.1.523 | 0.003125 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | B.1.1.526 | 0.007092 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | B.1.1.89 | 0.012121 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | B.1.177.18 | 0.00232 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | B.1.177.72 | 0.00678 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | B.1.260 | 0.006689 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | B.1.466.1 | 0.014388 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | B.1.546 | 0.007407 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | B.1.9.5 | 0.011364 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | B.4 | 0.004415 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | C.37.1 | 0.005236 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | P.1.1 | 0.000635 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | A.23 | 0.010526 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | AP.1 | 0.001502 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | AW.1 | 0.003049 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | AY.115 | 0.005208 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.1.185 | 0.076923 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.1.228 | 0.003049 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.1.254 | 0.011236 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.1.288 | 0.001916 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.1.381 | 0.04 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.1.417 | 0.002703 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.1.507 | 0.008696 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.1.61 | 0.008772 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.105 | 0.009615 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.143 | 0.021277 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.177.84 | 0.006667 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.187 | 0.033333 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.198 | 0.071429 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.221.3 | 0.000833 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.3 | 0.002618 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.315 | 0.006061 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.433 | 0.003195 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.474 | 0.001901 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.605 | 0.005952 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.1.629 | 0.013333 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.58 | 0.010204 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | B.61 | 0.005747 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | C.31 | 0.017857 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | P.1.17.1 | 0.000875 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp3 | 1004 | T1004I | aCt | aTt | 1 | 1 | Q.4 | 0.000455 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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