CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1004

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31004T1004IT1822InonsynaCtaTt115961159615729-5731
ORF1ab/nsp31004T1004TT1822TsynacTacG9897670.7755315729-5731
ORF1ab/nsp31004T1004TT1822TsynacTacC9892130.2153695729-5731
ORF1ab/nsp31004T1004TT1822TsynacTacA98990.00910015729-5731
ORF1ab/nsp31004T1004NT1822NnonsynaCtaAt11111115729-5731
ORF1ab/nsp31004T1004AT1822AnonsynActGct75740.9866675729-5731
ORF1ab/nsp31004T1004AT1822AnonsynAcTGcA7510.01333335729-5731
ORF1ab/nsp31004T1004delT1822deldelACT---222215729-5731
ORF1ab/nsp31004T1004ST1822SnonsynaCtaGt970.7777785729-5731
ORF1ab/nsp31004T1004ST1822SnonsynActTct910.1111115729-5731
ORF1ab/nsp31004T1004ST1822SnonsynAcTTcC910.1111115729-5731
ORF1ab/nsp31004T1004YT1822YnonsynACtTAt210.55729-5731
ORF1ab/nsp31004T1004del1T1822del1delaCta-t210.55729-5731
ORF1ab/nsp31004T1004del1T1822del1delacTac-210.55729-5731
ORF1ab/nsp31004T1004YT1822YnonsynACTTAC210.55729-5731
ORF1ab/nsp31004T1004GT1822GnonsynACTGGG1115729-5731

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31004T1004IaCtaTt1159611596All0.002218
ORF1ab/nsp31004T1004IaCtaTt14421442B.1.1.70.001291
ORF1ab/nsp31004T1004IaCtaTt13441344B.1.1280.853875
ORF1ab/nsp31004T1004IaCtaTt11691169AY.500.934452
ORF1ab/nsp31004T1004TacTacG767989All0.000147
ORF1ab/nsp31004T1004TacTacC213989All0.000041
ORF1ab/nsp31004T1004TacTacA9989All0.000002
ORF1ab/nsp31004T1004IaCtaTt609609AY.250.003663
ORF1ab/nsp31004T1004IaCtaTt562562AY.840.245844
ORF1ab/nsp31004T1004IaCtaTt546546B.1.617.20.002056
ORF1ab/nsp31004T1004IaCtaTt502502AY.40.000781
ORF1ab/nsp31004T1004IaCtaTt416416B.1.20.003663
ORF1ab/nsp31004T1004IaCtaTt406406B.1.6250.955294
ORF1ab/nsp31004T1004IaCtaTt371371AY.430.001644
ORF1ab/nsp31004T1004TacTacG308329B.1.617.20.00116
ORF1ab/nsp31004T1004TacTacC21329B.1.617.20.000079
ORF1ab/nsp31004T1004IaCtaTt307307B.1.36.90.987138
ORF1ab/nsp31004T1004IaCtaTt182182AY.540.017353
ORF1ab/nsp31004T1004IaCtaTt181181B.1.1.5190.007188
ORF1ab/nsp31004T1004IaCtaTt181181P.10.002851
ORF1ab/nsp31004T1004TacTacG172174AY.390.00425
ORF1ab/nsp31004T1004TacTacC2174AY.390.000049
ORF1ab/nsp31004T1004IaCtaTt161161AY.440.00098
ORF1ab/nsp31004T1004IaCtaTt152152B.1.1770.002001
ORF1ab/nsp31004T1004IaCtaTt150150B.1.10.002721
ORF1ab/nsp31004T1004IaCtaTt146146B.10.001337
ORF1ab/nsp31004T1004TacTacG135144AY.1020.003579
ORF1ab/nsp31004T1004TacTacC9144AY.1020.000239
ORF1ab/nsp31004T1004IaCtaTt142142AY.34.10.072412
ORF1ab/nsp31004T1004IaCtaTt140140AY.1030.000869
ORF1ab/nsp31004T1004TacTacC130139B.1.1.70.000116
ORF1ab/nsp31004T1004TacTacG7139B.1.1.70.000006
ORF1ab/nsp31004T1004TacTacA2139B.1.1.70.000002
ORF1ab/nsp31004T1004IaCtaTt119119B.1.5750.036104
ORF1ab/nsp31004T1004IaCtaTt118118B.1.2210.008382
ORF1ab/nsp31004T1004IaCtaTt116116AY.1020.003076
ORF1ab/nsp31004T1004NaCtaAt111111All0.000021
ORF1ab/nsp31004T1004IaCtaTt9191AY.200.003537
ORF1ab/nsp31004T1004IaCtaTt8888AY.470.002737
ORF1ab/nsp31004T1004IaCtaTt8787AY.30.000865
ORF1ab/nsp31004T1004AActGct7475All0.000014
ORF1ab/nsp31004T1004AAcTGcA175All0
ORF1ab/nsp31004T1004IaCtaTt7070C.370.008124
ORF1ab/nsp31004T1004IaCtaTt6565B.1.258.170.006758
ORF1ab/nsp31004T1004IaCtaTt6363AY.390.001557
ORF1ab/nsp31004T1004IaCtaTt6060B.1.5260.00141
ORF1ab/nsp31004T1004IaCtaTt5353B.1.160.240.234513
ORF1ab/nsp31004T1004IaCtaTt5050B.1.1.2960.909091
ORF1ab/nsp31004T1004IaCtaTt4848AY.75.10.008655
ORF1ab/nsp31004T1004TacTacG4747AY.1200.001747
ORF1ab/nsp31004T1004NaCtaAt4545AY.40.00007
ORF1ab/nsp31004T1004IaCtaTt4040B.1.177.800.076482
ORF1ab/nsp31004T1004IaCtaTt3939AY.9.20.001432
ORF1ab/nsp31004T1004IaCtaTt3939B.1.6370.00285
ORF1ab/nsp31004T1004IaCtaTt3535AY.290.000552
ORF1ab/nsp31004T1004IaCtaTt3434B.1.3490.024303
ORF1ab/nsp31004T1004IaCtaTt3434Q.10.004295
ORF1ab/nsp31004T1004IaCtaTt3333B.1.1600.001029
ORF1ab/nsp31004T1004IaCtaTt3131AY.39.10.001228
ORF1ab/nsp31004T1004IaCtaTt3030B.1.1.630.011574
ORF1ab/nsp31004T1004IaCtaTt2929B.1.5250.003282
ORF1ab/nsp31004T1004TacTacG2528AY.430.000111
ORF1ab/nsp31004T1004TacTacC328AY.430.000013
ORF1ab/nsp31004T1004IaCtaTt2626AY.1010.012751
ORF1ab/nsp31004T1004IaCtaTt2323B.1.177.210.001759
ORF1ab/nsp31004T1004delACT---2222All0.000004
ORF1ab/nsp31004T1004IaCtaTt2222B.1.2340.002903
ORF1ab/nsp31004T1004IaCtaTt2121B.1.4290.000494
ORF1ab/nsp31004T1004IaCtaTt2020AY.1110.003663
ORF1ab/nsp31004T1004IaCtaTt2020AY.1200.000744
ORF1ab/nsp31004T1004TacTacC1920AY.40.00003
ORF1ab/nsp31004T1004TacTacG120AY.40.000002
ORF1ab/nsp31004T1004IaCtaTt2020B.1.177.600.004369
ORF1ab/nsp31004T1004IaCtaTt1818B.1.6310.060606
ORF1ab/nsp31004T1004IaCtaTt1717AY.99.20.001567
ORF1ab/nsp31004T1004IaCtaTt1717B.1.1.1760.007469
ORF1ab/nsp31004T1004IaCtaTt1717B.1.177.120.002579
ORF1ab/nsp31004T1004IaCtaTt1717B.1.351.20.005144
ORF1ab/nsp31004T1004IaCtaTt1616AY.230.001116
ORF1ab/nsp31004T1004IaCtaTt1616AY.420.000644
ORF1ab/nsp31004T1004TacTacG1616AY.60.000658
ORF1ab/nsp31004T1004IaCtaTt1515AY.9.10.001256
ORF1ab/nsp31004T1004AActGct1414AY.1030.000087
ORF1ab/nsp31004T1004IaCtaTt1414AY.320.007455
ORF1ab/nsp31004T1004IaCtaTt1414B.1.3060.08
ORF1ab/nsp31004T1004IaCtaTt1313AY.1000.000598
ORF1ab/nsp31004T1004IaCtaTt1313B.1.2060.010604
ORF1ab/nsp31004T1004IaCtaTt1313C.180.033679
ORF1ab/nsp31004T1004IaCtaTt1212AY.1190.000424
ORF1ab/nsp31004T1004IaCtaTt1212AY.1210.001624
ORF1ab/nsp31004T1004IaCtaTt1212AY.260.00034
ORF1ab/nsp31004T1004IaCtaTt1212B.1.177.40.002533
ORF1ab/nsp31004T1004IaCtaTt1212B.1.2360.024641
ORF1ab/nsp31004T1004IaCtaTt1212B.1.3910.013529
ORF1ab/nsp31004T1004IaCtaTt1212B.1.5950.003132
ORF1ab/nsp31004T1004NaCtaAt1111AY.1030.000068
ORF1ab/nsp31004T1004IaCtaTt1111AY.280.020794
ORF1ab/nsp31004T1004NaCtaAt1111AY.430.000049
ORF1ab/nsp31004T1004IaCtaTt1111AY.610.001153
ORF1ab/nsp31004T1004IaCtaTt1111AY.90.000744
ORF1ab/nsp31004T1004IaCtaTt1111B.1.3510.000327
ORF1ab/nsp31004T1004IaCtaTt1010AY.1180.000626
ORF1ab/nsp31004T1004IaCtaTt1010AY.330.000668
ORF1ab/nsp31004T1004IaCtaTt1010AY.340.00097
ORF1ab/nsp31004T1004IaCtaTt1010AY.46.60.000722
ORF1ab/nsp31004T1004IaCtaTt1010AY.490.031949
ORF1ab/nsp31004T1004IaCtaTt1010AY.50.000206
ORF1ab/nsp31004T1004IaCtaTt1010AY.740.001156
ORF1ab/nsp31004T1004NaCtaAt1010B.1.1.70.000009
ORF1ab/nsp31004T1004IaCtaTt1010B.1.258.30.01675
ORF1ab/nsp31004T1004IaCtaTt1010P.20.001866
ORF1ab/nsp31004T1004IaCtaTt1010Q.80.001649
ORF1ab/nsp31004T1004IaCtaTt99AA.60.145161
ORF1ab/nsp31004T1004SaCtaGt79All0.000001
ORF1ab/nsp31004T1004SAcTTcC19All0
ORF1ab/nsp31004T1004SActTct19All0
ORF1ab/nsp31004T1004IaCtaTt99AY.4.50.000967
ORF1ab/nsp31004T1004TacTacG69AY.440.000037
ORF1ab/nsp31004T1004TacTacC29AY.440.000012
ORF1ab/nsp31004T1004TacTacA19AY.440.000006
ORF1ab/nsp31004T1004IaCtaTt99AY.450.001095
ORF1ab/nsp31004T1004IaCtaTt99AY.5.30.003036
ORF1ab/nsp31004T1004IaCtaTt99B.1.6210.000797
ORF1ab/nsp31004T1004IaCtaTt99P.1.120.004356
ORF1ab/nsp31004T1004AActGct88AY.1190.000282
ORF1ab/nsp31004T1004IaCtaTt88AY.750.000448
ORF1ab/nsp31004T1004IaCtaTt88B.1.2430.000557
ORF1ab/nsp31004T1004IaCtaTt88B.1.2580.000532
ORF1ab/nsp31004T1004IaCtaTt88B.1.360.001167
ORF1ab/nsp31004T1004NaCtaAt88B.1.617.20.00003
ORF1ab/nsp31004T1004AActGct77AY.40.000011
ORF1ab/nsp31004T1004TacTacG57AY.450.000608
ORF1ab/nsp31004T1004TacTacC27AY.450.000243
ORF1ab/nsp31004T1004IaCtaTt77AY.60.000288
ORF1ab/nsp31004T1004AActGct77AY.700.00146
ORF1ab/nsp31004T1004IaCtaTt77AY.990.007345
ORF1ab/nsp31004T1004IaCtaTt77B0.000895
ORF1ab/nsp31004T1004IaCtaTt77B.1.1.250.00398
ORF1ab/nsp31004T1004IaCtaTt77B.1.1.3910.059829
ORF1ab/nsp31004T1004IaCtaTt77B.1.177.860.001284
ORF1ab/nsp31004T1004IaCtaTt77B.1.36.260.02
ORF1ab/nsp31004T1004IaCtaTt77B.1.4270.000353
ORF1ab/nsp31004T1004IaCtaTt66A.2.50.002994
ORF1ab/nsp31004T1004IaCtaTt66AY.1170.000507
ORF1ab/nsp31004T1004IaCtaTt66AY.16.10.00282
ORF1ab/nsp31004T1004IaCtaTt66AY.4.20.00013
ORF1ab/nsp31004T1004NaCtaAt66AY.440.000037
ORF1ab/nsp31004T1004IaCtaTt66AY.46.40.000987
ORF1ab/nsp31004T1004IaCtaTt66AY.98.10.000291
ORF1ab/nsp31004T1004IaCtaTt66B.1.1.2430.02449
ORF1ab/nsp31004T1004IaCtaTt66B.1.1.3760.035714
ORF1ab/nsp31004T1004delACT---66B.1.1.70.000005
ORF1ab/nsp31004T1004IaCtaTt66B.1.466.20.002347
ORF1ab/nsp31004T1004IaCtaTt66C.160.006363
ORF1ab/nsp31004T1004IaCtaTt66P.1.170.000971
ORF1ab/nsp31004T1004IaCtaTt55AY.1130.000712
ORF1ab/nsp31004T1004IaCtaTt55AY.580.004537
ORF1ab/nsp31004T1004IaCtaTt55AY.910.003652
ORF1ab/nsp31004T1004IaCtaTt55B.1.1.280.001556
ORF1ab/nsp31004T1004IaCtaTt55B.1.5960.000436
ORF1ab/nsp31004T1004AActGct55B.1.617.20.000019
ORF1ab/nsp31004T1004IaCtaTt55D.50.024876
ORF1ab/nsp31004T1004IaCtaTt55P.1.100.001347
ORF1ab/nsp31004T1004IaCtaTt44A.10.001127
ORF1ab/nsp31004T1004TacTacG44AY.1190.000141
ORF1ab/nsp31004T1004AActGct44AY.250.000024
ORF1ab/nsp31004T1004TacTacC44AY.46.50.000794
ORF1ab/nsp31004T1004IaCtaTt44AY.620.001743
ORF1ab/nsp31004T1004AActGct44B.10.000037
ORF1ab/nsp31004T1004TacTacG34B.10.000027
ORF1ab/nsp31004T1004TacTacC14B.10.000009
ORF1ab/nsp31004T1004IaCtaTt44B.1.1.2200.007435
ORF1ab/nsp31004T1004IaCtaTt44B.1.1.2220.000816
ORF1ab/nsp31004T1004TacTacC44B.1.1.390.002039
ORF1ab/nsp31004T1004AActGct44B.1.1.70.000004
ORF1ab/nsp31004T1004TacTacG44B.1.177.530.009569
ORF1ab/nsp31004T1004IaCtaTt44B.1.177.70.000659
ORF1ab/nsp31004T1004IaCtaTt44B.1.36.170.001976
ORF1ab/nsp31004T1004IaCtaTt44B.1.4710.010929
ORF1ab/nsp31004T1004IaCtaTt44B.1.617.10.000516
ORF1ab/nsp31004T1004IaCtaTt44P.1.160.001496
ORF1ab/nsp31004T1004TacTacA23AY.1030.000012
ORF1ab/nsp31004T1004TacTacC13AY.1030.000006
ORF1ab/nsp31004T1004IaCtaTt33AY.1060.001005
ORF1ab/nsp31004T1004TacTacG33AY.1100.000338
ORF1ab/nsp31004T1004IaCtaTt33AY.1160.00086
ORF1ab/nsp31004T1004IaCtaTt33AY.270.000194
ORF1ab/nsp31004T1004AActGct33AY.440.000018
ORF1ab/nsp31004T1004IaCtaTt33AY.460.000312
ORF1ab/nsp31004T1004TacTacG33AY.460.000312
ORF1ab/nsp31004T1004IaCtaTt33AY.550.002752
ORF1ab/nsp31004T1004IaCtaTt33AY.590.001589
ORF1ab/nsp31004T1004IaCtaTt33AY.70.000588
ORF1ab/nsp31004T1004IaCtaTt33AY.770.003382
ORF1ab/nsp31004T1004NaCtaAt33AY.9.10.000251
ORF1ab/nsp31004T1004IaCtaTt33AY.920.000862
ORF1ab/nsp31004T1004TacTacG33AY.980.000237
ORF1ab/nsp31004T1004IaCtaTt33AY.980.000237
ORF1ab/nsp31004T1004IaCtaTt33B.1.1.2800.009259
ORF1ab/nsp31004T1004IaCtaTt33B.1.177.520.005272
ORF1ab/nsp31004T1004NaCtaAt33B.1.177.770.002179
ORF1ab/nsp31004T1004TacTacC23B.1.20.000018
ORF1ab/nsp31004T1004TacTacG13B.1.20.000009
ORF1ab/nsp31004T1004IaCtaTt33B.1.258.40.010345
ORF1ab/nsp31004T1004IaCtaTt33B.1.2890.007979
ORF1ab/nsp31004T1004IaCtaTt33B.1.36.160.004274
ORF1ab/nsp31004T1004IaCtaTt33B.1.3670.002377
ORF1ab/nsp31004T1004IaCtaTt33B.1.438.10.000322
ORF1ab/nsp31004T1004IaCtaTt33B.1.5400.029126
ORF1ab/nsp31004T1004IaCtaTt33B.1.5880.00273
ORF1ab/nsp31004T1004IaCtaTt33C.350.002322
ORF1ab/nsp31004T1004IaCtaTt33P.1.140.000143
ORF1ab/nsp31004T1004IaCtaTt22A.270.003311
ORF1ab/nsp31004T1004del1aCta-t12All0
ORF1ab/nsp31004T1004del1acTac-12All0
ORF1ab/nsp31004T1004YACtTAt12All0
ORF1ab/nsp31004T1004YACTTAC12All0
ORF1ab/nsp31004T1004TacTacG12AY.1000.000046
ORF1ab/nsp31004T1004TacTacA12AY.1000.000046
ORF1ab/nsp31004T1004IaCtaTt22AY.1100.000225
ORF1ab/nsp31004T1004SaCtaGt22AY.1140.000462
ORF1ab/nsp31004T1004IaCtaTt22AY.120.10.000642
ORF1ab/nsp31004T1004TacTacG22AY.1210.000271
ORF1ab/nsp31004T1004IaCtaTt22AY.140.000176
ORF1ab/nsp31004T1004IaCtaTt22AY.29.10.000441
ORF1ab/nsp31004T1004IaCtaTt22AY.3.10.000171
ORF1ab/nsp31004T1004IaCtaTt22AY.350.000466
ORF1ab/nsp31004T1004IaCtaTt22AY.370.000632
ORF1ab/nsp31004T1004IaCtaTt22AY.380.000999
ORF1ab/nsp31004T1004NaCtaAt22AY.4.20.000043
ORF1ab/nsp31004T1004IaCtaTt22AY.4.2.10.000298
ORF1ab/nsp31004T1004AActGct22AY.4.40.000818
ORF1ab/nsp31004T1004IaCtaTt22AY.410.000588
ORF1ab/nsp31004T1004SaCtaGt22AY.470.000062
ORF1ab/nsp31004T1004IaCtaTt22AY.480.00093
ORF1ab/nsp31004T1004IaCtaTt22AY.640.00119
ORF1ab/nsp31004T1004IaCtaTt22AY.710.00095
ORF1ab/nsp31004T1004IaCtaTt22AY.760.009662
ORF1ab/nsp31004T1004TacTacG22AY.820.002714
ORF1ab/nsp31004T1004TacTacG22AY.880.001768
ORF1ab/nsp31004T1004IaCtaTt22AY.890.009804
ORF1ab/nsp31004T1004TacTacC22B.1.10.000036
ORF1ab/nsp31004T1004IaCtaTt22B.1.1.100.00223
ORF1ab/nsp31004T1004IaCtaTt22B.1.1.1610.007067
ORF1ab/nsp31004T1004IaCtaTt22B.1.1.2660.02439
ORF1ab/nsp31004T1004IaCtaTt22B.1.1.2690.002706
ORF1ab/nsp31004T1004IaCtaTt22B.1.1.2840.000215
ORF1ab/nsp31004T1004IaCtaTt22B.1.1.3060.000877
ORF1ab/nsp31004T1004IaCtaTt22B.1.1.3160.00185
ORF1ab/nsp31004T1004IaCtaTt22B.1.1.330.000842
ORF1ab/nsp31004T1004IaCtaTt22B.1.1.3480.001592
ORF1ab/nsp31004T1004IaCtaTt22B.1.1.3710.020833
ORF1ab/nsp31004T1004IaCtaTt22B.1.1.4480.004065
ORF1ab/nsp31004T1004IaCtaTt22B.1.1.4860.003155
ORF1ab/nsp31004T1004IaCtaTt22B.1.1.5230.003125
ORF1ab/nsp31004T1004IaCtaTt22B.1.1.5260.007092
ORF1ab/nsp31004T1004IaCtaTt22B.1.1.890.012121
ORF1ab/nsp31004T1004IaCtaTt22B.1.177.180.00232
ORF1ab/nsp31004T1004IaCtaTt22B.1.177.720.00678
ORF1ab/nsp31004T1004IaCtaTt22B.1.2400.000431
ORF1ab/nsp31004T1004IaCtaTt22B.1.2600.006689
ORF1ab/nsp31004T1004delACT---22B.1.360.000292
ORF1ab/nsp31004T1004IaCtaTt22B.1.36.290.001035
ORF1ab/nsp31004T1004IaCtaTt22B.1.3690.00057
ORF1ab/nsp31004T1004AActGct22B.1.4290.000047
ORF1ab/nsp31004T1004IaCtaTt22B.1.466.10.014388
ORF1ab/nsp31004T1004IaCtaTt22B.1.4990.002101
ORF1ab/nsp31004T1004IaCtaTt22B.1.5460.007407
ORF1ab/nsp31004T1004IaCtaTt22B.1.5610.000794
ORF1ab/nsp31004T1004delACT---22B.1.617.20.000008
ORF1ab/nsp31004T1004IaCtaTt22B.1.9.50.011364
ORF1ab/nsp31004T1004IaCtaTt22B.40.004415
ORF1ab/nsp31004T1004IaCtaTt22C.37.10.005236
ORF1ab/nsp31004T1004IaCtaTt22D.20.00015
ORF1ab/nsp31004T1004AActGct22P.10.000032
ORF1ab/nsp31004T1004IaCtaTt22P.1.10.000635
ORF1ab/nsp31004T1004AActGct22P.1.140.000096
ORF1ab/nsp31004T1004IaCtaTt22R.10.00018
ORF1ab/nsp31004T1004SActTct110.055556
ORF1ab/nsp31004T1004TacTacC11A.20.000662
ORF1ab/nsp31004T1004IaCtaTt11A.20.000662
ORF1ab/nsp31004T1004delACT---11A.2.20.001689
ORF1ab/nsp31004T1004IaCtaTt11A.2.20.001689
ORF1ab/nsp31004T1004IaCtaTt11A.2.5.20.001572
ORF1ab/nsp31004T1004IaCtaTt11A.230.010526
ORF1ab/nsp31004T1004IaCtaTt11A.23.10.000704
ORF1ab/nsp31004T1004IaCtaTt11A.50.001923
ORF1ab/nsp31004T1004GACTGGG11All0
ORF1ab/nsp31004T1004IaCtaTt11AP.10.001502
ORF1ab/nsp31004T1004IaCtaTt11AW.10.003049
ORF1ab/nsp31004T1004NaCtaAt11AY.1020.000027
ORF1ab/nsp31004T1004IaCtaTt11AY.1070.000466
ORF1ab/nsp31004T1004IaCtaTt11AY.1080.001103
ORF1ab/nsp31004T1004IaCtaTt11AY.1140.000231
ORF1ab/nsp31004T1004IaCtaTt11AY.1150.005208
ORF1ab/nsp31004T1004NaCtaAt11AY.1190.000035
ORF1ab/nsp31004T1004IaCtaTt11AY.130.000161
ORF1ab/nsp31004T1004NaCtaAt11AY.16.10.00047
ORF1ab/nsp31004T1004NaCtaAt11AY.200.000039
ORF1ab/nsp31004T1004AActGct11AY.230.00007
ORF1ab/nsp31004T1004NaCtaAt11AY.230.00007
ORF1ab/nsp31004T1004IaCtaTt11AY.240.000431
ORF1ab/nsp31004T1004TacTacA11AY.250.000006
ORF1ab/nsp31004T1004TacTacG11AY.260.000028
ORF1ab/nsp31004T1004IaCtaTt11AY.300.000396
ORF1ab/nsp31004T1004TacTacG11AY.330.000067
ORF1ab/nsp31004T1004TacTacG11AY.34.10.00051
ORF1ab/nsp31004T1004del1acTac-11AY.390.000025
ORF1ab/nsp31004T1004IaCtaTt11AY.39.20.001541
ORF1ab/nsp31004T1004TacTacG11AY.4.2.10.000149
ORF1ab/nsp31004T1004NaCtaAt11AY.4.2.10.000149
ORF1ab/nsp31004T1004AActGct11AY.430.000004
ORF1ab/nsp31004T1004TacTacG11AY.46.20.000635
ORF1ab/nsp31004T1004IaCtaTt11AY.46.20.000635
ORF1ab/nsp31004T1004TacTacC11AY.46.60.000072
ORF1ab/nsp31004T1004AActGct11AY.470.000031
ORF1ab/nsp31004T1004TacTacG11AY.470.000031
ORF1ab/nsp31004T1004TacTacG11AY.50.000021
ORF1ab/nsp31004T1004IaCtaTt11AY.5.40.000277
ORF1ab/nsp31004T1004SaCtaGt11AY.540.000095
ORF1ab/nsp31004T1004TacTacG11AY.580.000907
ORF1ab/nsp31004T1004YACTTAC11AY.590.00053
ORF1ab/nsp31004T1004NaCtaAt11AY.590.00053
ORF1ab/nsp31004T1004TacTacA11AY.620.000436
ORF1ab/nsp31004T1004delACT---11AY.620.000436
ORF1ab/nsp31004T1004IaCtaTt11AY.680.000274
ORF1ab/nsp31004T1004IaCtaTt11AY.690.000187
ORF1ab/nsp31004T1004IaCtaTt11AY.7.10.000113
ORF1ab/nsp31004T1004delACT---11AY.750.000056
ORF1ab/nsp31004T1004TacTacG11AY.790.001211
ORF1ab/nsp31004T1004TacTacG11AY.840.000437
ORF1ab/nsp31004T1004delACT---11AY.850.000427
ORF1ab/nsp31004T1004IaCtaTt11AY.850.000427
ORF1ab/nsp31004T1004SAcTTcC11AY.850.000427
ORF1ab/nsp31004T1004IaCtaTt11AY.860.00083
ORF1ab/nsp31004T1004IaCtaTt11AY.880.000884
ORF1ab/nsp31004T1004SaCtaGt11AY.9.10.000084
ORF1ab/nsp31004T1004IaCtaTt11AY.940.000443
ORF1ab/nsp31004T1004TacTacG11AY.950.000761
ORF1ab/nsp31004T1004NaCtaAt11AY.980.000079
ORF1ab/nsp31004T1004TacTacG11AY.98.10.000048
ORF1ab/nsp31004T1004IaCtaTt11AZ.10.000867
ORF1ab/nsp31004T1004del1aCta-t11B0.000128
ORF1ab/nsp31004T1004GACTGGG11B.10.000009
ORF1ab/nsp31004T1004NaCtaAt11B.10.000009
ORF1ab/nsp31004T1004IaCtaTt11B.1.1.10.000327
ORF1ab/nsp31004T1004SaCtaGt11B.1.1.100.001115
ORF1ab/nsp31004T1004delACT---11B.1.1.1390.022727
ORF1ab/nsp31004T1004IaCtaTt11B.1.1.1410.002012
ORF1ab/nsp31004T1004delACT---11B.1.1.1420.017544
ORF1ab/nsp31004T1004delACT---11B.1.1.1590.004673
ORF1ab/nsp31004T1004IaCtaTt11B.1.1.1850.076923
ORF1ab/nsp31004T1004IaCtaTt11B.1.1.1920.002309
ORF1ab/nsp31004T1004IaCtaTt11B.1.1.2140.000055
ORF1ab/nsp31004T1004IaCtaTt11B.1.1.2280.003049
ORF1ab/nsp31004T1004IaCtaTt11B.1.1.2360.006897
ORF1ab/nsp31004T1004IaCtaTt11B.1.1.2540.011236
ORF1ab/nsp31004T1004IaCtaTt11B.1.1.2630.001558
ORF1ab/nsp31004T1004IaCtaTt11B.1.1.2880.001916
ORF1ab/nsp31004T1004IaCtaTt11B.1.1.2940.001266
ORF1ab/nsp31004T1004IaCtaTt11B.1.1.3110.000358
ORF1ab/nsp31004T1004IaCtaTt11B.1.1.3180.000302
ORF1ab/nsp31004T1004IaCtaTt11B.1.1.3260.001761
ORF1ab/nsp31004T1004IaCtaTt11B.1.1.3810.04
ORF1ab/nsp31004T1004IaCtaTt11B.1.1.390.00051
ORF1ab/nsp31004T1004IaCtaTt11B.1.1.4130.006897
ORF1ab/nsp31004T1004IaCtaTt11B.1.1.4170.002703
ORF1ab/nsp31004T1004TacTacG11B.1.1.4200.001006
ORF1ab/nsp31004T1004IaCtaTt11B.1.1.5070.008696
ORF1ab/nsp31004T1004IaCtaTt11B.1.1.510.001718
ORF1ab/nsp31004T1004NaCtaAt11B.1.1.5190.00004
ORF1ab/nsp31004T1004IaCtaTt11B.1.1.610.008772
ORF1ab/nsp31004T1004IaCtaTt11B.1.1.700.000341
ORF1ab/nsp31004T1004IaCtaTt11B.1.1050.009615
ORF1ab/nsp31004T1004TacTacC11B.1.1170.0125
ORF1ab/nsp31004T1004IaCtaTt11B.1.1390.000733
ORF1ab/nsp31004T1004IaCtaTt11B.1.1430.021277
ORF1ab/nsp31004T1004IaCtaTt11B.1.1470.000756
ORF1ab/nsp31004T1004IaCtaTt11B.1.1570.002985
ORF1ab/nsp31004T1004TacTacG11B.1.1600.000031
ORF1ab/nsp31004T1004AActGct11B.1.160.160.000929
ORF1ab/nsp31004T1004TacTacC11B.1.1770.000013
ORF1ab/nsp31004T1004AActGct11B.1.1770.000013
ORF1ab/nsp31004T1004IaCtaTt11B.1.177.100.000878
ORF1ab/nsp31004T1004TacTacC11B.1.177.120.000152
ORF1ab/nsp31004T1004IaCtaTt11B.1.177.460.000918
ORF1ab/nsp31004T1004IaCtaTt11B.1.177.540.000606
ORF1ab/nsp31004T1004IaCtaTt11B.1.177.560.000668
ORF1ab/nsp31004T1004IaCtaTt11B.1.177.820.000477
ORF1ab/nsp31004T1004IaCtaTt11B.1.177.840.006667
ORF1ab/nsp31004T1004IaCtaTt11B.1.1870.033333
ORF1ab/nsp31004T1004IaCtaTt11B.1.1980.071429
ORF1ab/nsp31004T1004IaCtaTt11B.1.2100.002132
ORF1ab/nsp31004T1004IaCtaTt11B.1.214.20.0006
ORF1ab/nsp31004T1004IaCtaTt11B.1.221.30.000833
ORF1ab/nsp31004T1004YACtTAt11B.1.2580.000067
ORF1ab/nsp31004T1004IaCtaTt11B.1.2790.000514
ORF1ab/nsp31004T1004IaCtaTt11B.1.30.002618
ORF1ab/nsp31004T1004TacTacG11B.1.3110.000275
ORF1ab/nsp31004T1004AActGct11B.1.3110.000275
ORF1ab/nsp31004T1004IaCtaTt11B.1.3150.006061
ORF1ab/nsp31004T1004delACT---11B.1.3190.003049
ORF1ab/nsp31004T1004IaCtaTt11B.1.3200.001245
ORF1ab/nsp31004T1004IaCtaTt11B.1.3360.002439
ORF1ab/nsp31004T1004IaCtaTt11B.1.3460.001311
ORF1ab/nsp31004T1004TacTacC11B.1.3510.00003
ORF1ab/nsp31004T1004NaCtaAt11B.1.3510.00003
ORF1ab/nsp31004T1004TacTacA11B.1.360.000146
ORF1ab/nsp31004T1004IaCtaTt11B.1.36.80.001
ORF1ab/nsp31004T1004TacTacG11B.1.3710.001122
ORF1ab/nsp31004T1004AAcTGcA11B.1.3770.004566
ORF1ab/nsp31004T1004AActGct11B.1.3990.001934
ORF1ab/nsp31004T1004IaCtaTt11B.1.416.10.001563
ORF1ab/nsp31004T1004NaCtaAt11B.1.4270.00005
ORF1ab/nsp31004T1004TacTacG11B.1.4290.000024
ORF1ab/nsp31004T1004IaCtaTt11B.1.4330.003195
ORF1ab/nsp31004T1004IaCtaTt11B.1.4700.001404
ORF1ab/nsp31004T1004IaCtaTt11B.1.4740.001901
ORF1ab/nsp31004T1004IaCtaTt11B.1.4970.000315
ORF1ab/nsp31004T1004IaCtaTt11B.1.5170.000427
ORF1ab/nsp31004T1004IaCtaTt11B.1.5240.001406
ORF1ab/nsp31004T1004delACT---11B.1.5460.003704
ORF1ab/nsp31004T1004IaCtaTt11B.1.5600.00463
ORF1ab/nsp31004T1004IaCtaTt11B.1.5680.001111
ORF1ab/nsp31004T1004TacTacC11B.1.5760.000907
ORF1ab/nsp31004T1004IaCtaTt11B.1.5770.000687
ORF1ab/nsp31004T1004IaCtaTt11B.1.6050.005952
ORF1ab/nsp31004T1004IaCtaTt11B.1.6090.000479
ORF1ab/nsp31004T1004AActGct11B.1.617.10.000129
ORF1ab/nsp31004T1004IaCtaTt11B.1.6190.000871
ORF1ab/nsp31004T1004IaCtaTt11B.1.621.10.000506
ORF1ab/nsp31004T1004IaCtaTt11B.1.6270.00202
ORF1ab/nsp31004T1004IaCtaTt11B.1.6280.000352
ORF1ab/nsp31004T1004IaCtaTt11B.1.6290.013333
ORF1ab/nsp31004T1004delACT---11B.150.017544
ORF1ab/nsp31004T1004delACT---11B.340.013699
ORF1ab/nsp31004T1004IaCtaTt11B.400.000364
ORF1ab/nsp31004T1004IaCtaTt11B.550.00295
ORF1ab/nsp31004T1004IaCtaTt11B.580.010204
ORF1ab/nsp31004T1004IaCtaTt11B.610.005747
ORF1ab/nsp31004T1004IaCtaTt11C.140.004329
ORF1ab/nsp31004T1004IaCtaTt11C.310.017857
ORF1ab/nsp31004T1004TacTacC11C.350.000774
ORF1ab/nsp31004T1004delACT---11C.370.000116
ORF1ab/nsp31004T1004AActGct11C.370.000116
ORF1ab/nsp31004T1004TacTacC11D.20.000075
ORF1ab/nsp31004T1004TacTacC11P.10.000016
ORF1ab/nsp31004T1004IaCtaTt11P.1.150.000232
ORF1ab/nsp31004T1004IaCtaTt11P.1.17.10.000875
ORF1ab/nsp31004T1004IaCtaTt11P.1.70.000319
ORF1ab/nsp31004T1004AActGct11P.30.001595
ORF1ab/nsp31004T1004TacTacC11Q.10.000126
ORF1ab/nsp31004T1004IaCtaTt11Q.30.000145
ORF1ab/nsp31004T1004IaCtaTt11Q.40.000455