CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1002 | T1002I | T1820I | nonsyn | aCa | aTa | 3740 | 3740 | 1 | 5723-5725 |
ORF1ab/nsp3 | 1002 | T1002T | T1820T | syn | acA | acG | 452 | 353 | 0.780973 | 5723-5725 |
ORF1ab/nsp3 | 1002 | T1002T | T1820T | syn | acA | acT | 452 | 53 | 0.117257 | 5723-5725 |
ORF1ab/nsp3 | 1002 | T1002T | T1820T | syn | acA | acC | 452 | 46 | 0.10177 | 5723-5725 |
ORF1ab/nsp3 | 1002 | T1002A | T1820A | nonsyn | Aca | Gca | 131 | 131 | 1 | 5723-5725 |
ORF1ab/nsp3 | 1002 | T1002del | T1820del | del | ACA | --- | 21 | 21 | 1 | 5723-5725 |
ORF1ab/nsp3 | 1002 | T1002R | T1820R | nonsyn | aCa | aGa | 11 | 11 | 1 | 5723-5725 |
ORF1ab/nsp3 | 1002 | T1002S | T1820S | nonsyn | Aca | Tca | 3 | 2 | 0.666667 | 5723-5725 |
ORF1ab/nsp3 | 1002 | T1002S | T1820S | nonsyn | aCA | aGC | 3 | 1 | 0.333333 | 5723-5725 |
ORF1ab/nsp3 | 1002 | T1002K | T1820K | nonsyn | aCa | aAa | 2 | 2 | 1 | 5723-5725 |
ORF1ab/nsp3 | 1002 | T1002V | T1820V | nonsyn | ACa | GTa | 2 | 2 | 1 | 5723-5725 |
ORF1ab/nsp3 | 1002 | T1002N | T1820N | nonsyn | aCA | aAC | 1 | 1 | 1 | 5723-5725 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 3740 | 3740 | All | 0.000715 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1117 | 1117 | P.1 | 0.017597 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 850 | 850 | P.1.2 | 0.982659 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 353 | 452 | All | 0.000068 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acT | 53 | 452 | All | 0.00001 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acC | 46 | 452 | All | 0.000009 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 236 | 236 | AY.103 | 0.001465 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 153 | 153 | B.1.177.21 | 0.0117 |
ORF1ab/nsp3 | 1002 | T1002A | Aca | Gca | 131 | 131 | All | 0.000025 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 127 | 127 | B.1.1.7 | 0.000114 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 109 | 109 | B.1.617.2 | 0.00041 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 102 | 102 | B.1.177 | 0.001343 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 97 | 97 | B.1.177.12 | 0.014715 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 84 | 84 | B.1.2 | 0.00074 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 79 | 79 | AY.4 | 0.000123 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 78 | 78 | B.1.526 | 0.001833 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 72 | 73 | B.1 | 0.000659 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acT | 1 | 73 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 61 | 61 | P.1.1 | 0.019377 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 48 | 56 | B.1.1.7 | 0.000043 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acT | 5 | 56 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acC | 3 | 56 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 56 | 56 | B.1.351.2 | 0.016944 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 45 | 45 | B.1.1.50 | 0.03055 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 43 | 43 | AY.39 | 0.001063 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 42 | 42 | AY.36 | 0.006225 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 40 | 40 | AY.44 | 0.000243 |
ORF1ab/nsp3 | 1002 | T1002A | Aca | Gca | 39 | 39 | AY.46.4 | 0.006416 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 39 | 39 | B.1 | 0.000357 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 32 | 32 | AY.43 | 0.000142 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 31 | 31 | B.1.637 | 0.002265 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 29 | 29 | AY.3 | 0.000288 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 27 | 27 | AY.25 | 0.000162 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acT | 24 | 24 | B.1.258 | 0.001597 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acC | 23 | 23 | AY.46.4 | 0.003784 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 22 | 22 | AY.29 | 0.000347 |
ORF1ab/nsp3 | 1002 | T1002del | ACA | --- | 21 | 21 | All | 0.000004 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 20 | 20 | B.1.36 | 0.002918 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 13 | 17 | AY.4 | 0.00002 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acT | 3 | 17 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acC | 1 | 17 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 15 | 15 | B.1.619 | 0.013066 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 13 | 13 | B.1.160 | 0.000405 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 13 | 13 | P.1.12 | 0.006292 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 13 | 13 | Q.7 | 0.014444 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 12 | 12 | AY.90 | 0.008214 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 10 | 11 | A | 0.00387 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acC | 1 | 11 | A | 0.000387 |
ORF1ab/nsp3 | 1002 | T1002R | aCa | aGa | 11 | 11 | All | 0.000002 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 11 | 11 | AY.118 | 0.000689 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 9 | 10 | AY.103 | 0.000056 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acT | 1 | 10 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 10 | 10 | B.1.1 | 0.000181 |
ORF1ab/nsp3 | 1002 | T1002R | aCa | aGa | 9 | 9 | AY.103 | 0.000056 |
ORF1ab/nsp3 | 1002 | T1002A | Aca | Gca | 9 | 9 | AY.4 | 0.000014 |
ORF1ab/nsp3 | 1002 | T1002A | Aca | Gca | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 9 | 9 | B.1.324 | 0.014446 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 9 | 9 | B.1.351 | 0.000268 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 6 | 9 | B.1.617.2 | 0.000023 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acC | 3 | 9 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 8 | 8 | B.1.1.214 | 0.000444 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 8 | 8 | P.1.14 | 0.000382 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 7 | 7 | AY.20 | 0.000272 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 3 | 7 | AY.20 | 0.000117 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acC | 3 | 7 | AY.20 | 0.000117 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acT | 1 | 7 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1002 | T1002A | Aca | Gca | 7 | 7 | AY.43 | 0.000031 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 7 | 7 | AY.46.3 | 0.006536 |
ORF1ab/nsp3 | 1002 | T1002A | Aca | Gca | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 7 | 7 | B.1.1.519 | 0.000278 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 7 | 7 | B.1.525 | 0.000792 |
ORF1ab/nsp3 | 1002 | T1002A | Aca | Gca | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 6 | 6 | AY.39.1 | 0.000238 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 4 | 6 | AY.43 | 0.000018 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acC | 2 | 6 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 6 | 6 | AY.45 | 0.00073 |
ORF1ab/nsp3 | 1002 | T1002del | ACA | --- | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 6 | 6 | P.1.15 | 0.001394 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 4 | 5 | AY.102 | 0.000106 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acT | 1 | 5 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1002 | T1002A | Aca | Gca | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 5 | 5 | AY.45 | 0.000608 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 5 | 5 | AY.5 | 0.000103 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acC | 5 | 5 | B.1.36.31 | 0.008757 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 5 | 5 | P.2 | 0.000933 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 4 | 4 | AY.34 | 0.000388 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp3 | 1002 | T1002A | Aca | Gca | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 4 | 4 | B | 0.000511 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 4 | 4 | B.1.1.512 | 0.114286 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 4 | 4 | B.1.177.81 | 0.000757 |
ORF1ab/nsp3 | 1002 | T1002A | Aca | Gca | 4 | 4 | B.1.234 | 0.000528 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 4 | 4 | B.1.400 | 0.001716 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 4 | 4 | C.37 | 0.000464 |
ORF1ab/nsp3 | 1002 | T1002S | Aca | Tca | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 1002 | T1002S | aCA | aGC | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 1002 | T1002A | Aca | Gca | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 3 | 3 | AY.107 | 0.001398 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acT | 2 | 3 | AY.117 | 0.000169 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 1 | 3 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 3 | 3 | AY.88 | 0.002653 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 3 | 3 | B.1.1.1 | 0.00098 |
ORF1ab/nsp3 | 1002 | T1002A | Aca | Gca | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 2 | 3 | B.1.243 | 0.000139 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acT | 1 | 3 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acT | 3 | 3 | B.1.470 | 0.004213 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 3 | 3 | B.1.631 | 0.010101 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 2 | 2 | A.2.5.2 | 0.003145 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 2 | 2 | A.21 | 0.00554 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp3 | 1002 | T1002K | aCa | aAa | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1002 | T1002V | ACa | GTa | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 2 | 2 | AY.101 | 0.000981 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 1 | 2 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acT | 1 | 2 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1002 | T1002A | Aca | Gca | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acC | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 1002 | T1002A | Aca | Gca | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp3 | 1002 | T1002A | Aca | Gca | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 2 | 2 | AY.52 | 0.001629 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acT | 2 | 2 | AY.87 | 0.001665 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 2 | 2 | AZ.2 | 0.001642 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 2 | 2 | B.1.1.525 | 0.010929 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 2 | 2 | B.1.160.32 | 0.008584 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 2 | 2 | B.1.169 | 0.029851 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acT | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 2 | 2 | B.1.231 | 0.064516 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp3 | 1002 | T1002del | ACA | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 1002 | T1002A | Aca | Gca | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 2 | 2 | B.1.564.1 | 0.003155 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 2 | 2 | B.1.565 | 0.001621 |
ORF1ab/nsp3 | 1002 | T1002del | ACA | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp3 | 1002 | T1002A | Aca | Gca | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 2 | 2 | P.1.6 | 0.003891 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 1002 | T1002del | ACA | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp3 | 1002 | T1002N | aCA | aAC | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1002 | T1002A | Aca | Gca | 1 | 1 | AN.1 | 0.02 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1002 | T1002A | Aca | Gca | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 1002 | T1002A | Aca | Gca | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 1002 | T1002A | Aca | Gca | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acC | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 1002 | T1002A | Aca | Gca | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acT | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1002 | T1002A | Aca | Gca | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1002 | T1002A | Aca | Gca | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acT | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1002 | T1002A | Aca | Gca | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1002 | T1002R | aCa | aGa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1002 | T1002A | Aca | Gca | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1002 | T1002A | Aca | Gca | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp3 | 1002 | T1002A | Aca | Gca | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 1002 | T1002A | Aca | Gca | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 1002 | T1002del | ACA | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acC | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 1002 | T1002del | ACA | --- | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | AY.91.1 | 0.004065 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 1002 | T1002S | aCA | aGC | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1002 | T1002A | Aca | Gca | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1002 | T1002del | ACA | --- | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp3 | 1002 | T1002del | ACA | --- | 1 | 1 | B.1.1.142 | 0.017544 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp3 | 1002 | T1002del | ACA | --- | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp3 | 1002 | T1002A | Aca | Gca | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | B.1.1.228 | 0.003049 |
ORF1ab/nsp3 | 1002 | T1002V | ACa | GTa | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp3 | 1002 | T1002A | Aca | Gca | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 1 | 1 | B.1.1.329 | 0.003846 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acC | 1 | 1 | B.1.1.337 | 0.003597 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | B.1.1.34 | 0.013158 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp3 | 1002 | T1002A | Aca | Gca | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1002 | T1002S | Aca | Tca | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1002 | T1002K | aCa | aAa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp3 | 1002 | T1002A | Aca | Gca | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acT | 1 | 1 | B.1.160.20 | 0.008929 |
ORF1ab/nsp3 | 1002 | T1002K | aCa | aAa | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 1002 | T1002A | Aca | Gca | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp3 | 1002 | T1002A | Aca | Gca | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 1002 | T1002A | Aca | Gca | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp3 | 1002 | T1002R | aCa | aGa | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 1002 | T1002N | aCA | aAC | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | B.1.289 | 0.00266 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1002 | T1002del | ACA | --- | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | B.1.36.19 | 0.009259 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp3 | 1002 | T1002A | Aca | Gca | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | B.1.413 | 0.004255 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1002 | T1002A | Aca | Gca | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1002 | T1002del | ACA | --- | 1 | 1 | B.1.546 | 0.003704 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | B.1.566 | 0.019231 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 1002 | T1002A | Aca | Gca | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acT | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 1002 | T1002S | Aca | Tca | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acT | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 1002 | T1002A | Aca | Gca | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 1002 | T1002del | ACA | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp3 | 1002 | T1002del | ACA | --- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | B.60 | 0.015873 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1002 | T1002del | ACA | --- | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | L.3 | 0.003546 |
ORF1ab/nsp3 | 1002 | T1002T | acA | acG | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1002 | T1002V | ACa | GTa | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 1002 | T1002I | aCa | aTa | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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