CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1002

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31002T1002IT1820InonsynaCaaTa3740374015723-5725
ORF1ab/nsp31002T1002TT1820TsynacAacG4523530.7809735723-5725
ORF1ab/nsp31002T1002TT1820TsynacAacT452530.1172575723-5725
ORF1ab/nsp31002T1002TT1820TsynacAacC452460.101775723-5725
ORF1ab/nsp31002T1002AT1820AnonsynAcaGca13113115723-5725
ORF1ab/nsp31002T1002delT1820deldelACA---212115723-5725
ORF1ab/nsp31002T1002RT1820RnonsynaCaaGa111115723-5725
ORF1ab/nsp31002T1002ST1820SnonsynAcaTca320.6666675723-5725
ORF1ab/nsp31002T1002ST1820SnonsynaCAaGC310.3333335723-5725
ORF1ab/nsp31002T1002KT1820KnonsynaCaaAa2215723-5725
ORF1ab/nsp31002T1002VT1820VnonsynACaGTa2215723-5725
ORF1ab/nsp31002T1002NT1820NnonsynaCAaAC1115723-5725

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31002T1002IaCaaTa37403740All0.000715
ORF1ab/nsp31002T1002IaCaaTa11171117P.10.017597
ORF1ab/nsp31002T1002IaCaaTa850850P.1.20.982659
ORF1ab/nsp31002T1002TacAacG353452All0.000068
ORF1ab/nsp31002T1002TacAacT53452All0.00001
ORF1ab/nsp31002T1002TacAacC46452All0.000009
ORF1ab/nsp31002T1002IaCaaTa236236AY.1030.001465
ORF1ab/nsp31002T1002IaCaaTa153153B.1.177.210.0117
ORF1ab/nsp31002T1002AAcaGca131131All0.000025
ORF1ab/nsp31002T1002IaCaaTa127127B.1.1.70.000114
ORF1ab/nsp31002T1002IaCaaTa109109B.1.617.20.00041
ORF1ab/nsp31002T1002IaCaaTa102102B.1.1770.001343
ORF1ab/nsp31002T1002TacAacG9797B.1.177.120.014715
ORF1ab/nsp31002T1002IaCaaTa8484B.1.20.00074
ORF1ab/nsp31002T1002IaCaaTa7979AY.40.000123
ORF1ab/nsp31002T1002IaCaaTa7878B.1.5260.001833
ORF1ab/nsp31002T1002TacAacG7273B.10.000659
ORF1ab/nsp31002T1002TacAacT173B.10.000009
ORF1ab/nsp31002T1002IaCaaTa6161P.1.10.019377
ORF1ab/nsp31002T1002TacAacG4856B.1.1.70.000043
ORF1ab/nsp31002T1002TacAacT556B.1.1.70.000004
ORF1ab/nsp31002T1002TacAacC356B.1.1.70.000003
ORF1ab/nsp31002T1002IaCaaTa5656B.1.351.20.016944
ORF1ab/nsp31002T1002IaCaaTa4545B.1.1.500.03055
ORF1ab/nsp31002T1002IaCaaTa4343AY.390.001063
ORF1ab/nsp31002T1002IaCaaTa4242AY.360.006225
ORF1ab/nsp31002T1002IaCaaTa4040AY.440.000243
ORF1ab/nsp31002T1002AAcaGca3939AY.46.40.006416
ORF1ab/nsp31002T1002IaCaaTa3939B.10.000357
ORF1ab/nsp31002T1002IaCaaTa3232AY.430.000142
ORF1ab/nsp31002T1002IaCaaTa3131B.1.6370.002265
ORF1ab/nsp31002T1002IaCaaTa2929AY.30.000288
ORF1ab/nsp31002T1002IaCaaTa2727AY.250.000162
ORF1ab/nsp31002T1002TacAacT2424B.1.2580.001597
ORF1ab/nsp31002T1002TacAacC2323AY.46.40.003784
ORF1ab/nsp31002T1002TacAacG2222AY.290.000347
ORF1ab/nsp31002T1002delACA---2121All0.000004
ORF1ab/nsp31002T1002IaCaaTa2020B.1.360.002918
ORF1ab/nsp31002T1002TacAacG1317AY.40.00002
ORF1ab/nsp31002T1002TacAacT317AY.40.000005
ORF1ab/nsp31002T1002TacAacC117AY.40.000002
ORF1ab/nsp31002T1002IaCaaTa1515B.1.6190.013066
ORF1ab/nsp31002T1002IaCaaTa1313B.1.1600.000405
ORF1ab/nsp31002T1002IaCaaTa1313P.1.120.006292
ORF1ab/nsp31002T1002IaCaaTa1313Q.70.014444
ORF1ab/nsp31002T1002IaCaaTa1212AY.900.008214
ORF1ab/nsp31002T1002TacAacG1011A0.00387
ORF1ab/nsp31002T1002TacAacC111A0.000387
ORF1ab/nsp31002T1002RaCaaGa1111All0.000002
ORF1ab/nsp31002T1002IaCaaTa1111AY.1180.000689
ORF1ab/nsp31002T1002TacAacG910AY.1030.000056
ORF1ab/nsp31002T1002TacAacT110AY.1030.000006
ORF1ab/nsp31002T1002IaCaaTa1010B.1.10.000181
ORF1ab/nsp31002T1002RaCaaGa99AY.1030.000056
ORF1ab/nsp31002T1002AAcaGca99AY.40.000014
ORF1ab/nsp31002T1002AAcaGca99B.1.1.70.000008
ORF1ab/nsp31002T1002IaCaaTa99B.1.3240.014446
ORF1ab/nsp31002T1002IaCaaTa99B.1.3510.000268
ORF1ab/nsp31002T1002TacAacG69B.1.617.20.000023
ORF1ab/nsp31002T1002TacAacC39B.1.617.20.000011
ORF1ab/nsp31002T1002IaCaaTa88B.1.1.2140.000444
ORF1ab/nsp31002T1002IaCaaTa88P.1.140.000382
ORF1ab/nsp31002T1002IaCaaTa77AY.200.000272
ORF1ab/nsp31002T1002TacAacG37AY.200.000117
ORF1ab/nsp31002T1002TacAacC37AY.200.000117
ORF1ab/nsp31002T1002TacAacT17AY.200.000039
ORF1ab/nsp31002T1002AAcaGca77AY.430.000031
ORF1ab/nsp31002T1002TacAacG77AY.46.30.006536
ORF1ab/nsp31002T1002AAcaGca77B.10.000064
ORF1ab/nsp31002T1002IaCaaTa77B.1.1.5190.000278
ORF1ab/nsp31002T1002IaCaaTa77B.1.5250.000792
ORF1ab/nsp31002T1002AAcaGca77B.1.617.20.000026
ORF1ab/nsp31002T1002IaCaaTa66AY.39.10.000238
ORF1ab/nsp31002T1002TacAacG46AY.430.000018
ORF1ab/nsp31002T1002TacAacC26AY.430.000009
ORF1ab/nsp31002T1002IaCaaTa66AY.450.00073
ORF1ab/nsp31002T1002delACA---66B.1.1.70.000005
ORF1ab/nsp31002T1002IaCaaTa66P.1.150.001394
ORF1ab/nsp31002T1002IaCaaTa55AY.1020.000133
ORF1ab/nsp31002T1002TacAacG45AY.1020.000106
ORF1ab/nsp31002T1002TacAacT15AY.1020.000027
ORF1ab/nsp31002T1002AAcaGca55AY.200.000194
ORF1ab/nsp31002T1002TacAacG55AY.450.000608
ORF1ab/nsp31002T1002IaCaaTa55AY.50.000103
ORF1ab/nsp31002T1002TacAacC55B.1.36.310.008757
ORF1ab/nsp31002T1002IaCaaTa55P.20.000933
ORF1ab/nsp31002T1002IaCaaTa44AY.1000.000184
ORF1ab/nsp31002T1002TacAacG44AY.30.00004
ORF1ab/nsp31002T1002IaCaaTa44AY.340.000388
ORF1ab/nsp31002T1002TacAacG44AY.440.000024
ORF1ab/nsp31002T1002AAcaGca44AY.440.000024
ORF1ab/nsp31002T1002IaCaaTa44B0.000511
ORF1ab/nsp31002T1002IaCaaTa44B.1.1.5120.114286
ORF1ab/nsp31002T1002IaCaaTa44B.1.177.810.000757
ORF1ab/nsp31002T1002AAcaGca44B.1.2340.000528
ORF1ab/nsp31002T1002IaCaaTa44B.1.4000.001716
ORF1ab/nsp31002T1002IaCaaTa44B.1.4290.000094
ORF1ab/nsp31002T1002IaCaaTa44C.370.000464
ORF1ab/nsp31002T1002SAcaTca23All0
ORF1ab/nsp31002T1002SaCAaGC13All0
ORF1ab/nsp31002T1002AAcaGca33AY.1030.000019
ORF1ab/nsp31002T1002IaCaaTa33AY.1070.001398
ORF1ab/nsp31002T1002TacAacT23AY.1170.000169
ORF1ab/nsp31002T1002TacAacG13AY.1170.000085
ORF1ab/nsp31002T1002IaCaaTa33AY.330.0002
ORF1ab/nsp31002T1002TacAacG33AY.4.50.000322
ORF1ab/nsp31002T1002IaCaaTa33AY.880.002653
ORF1ab/nsp31002T1002IaCaaTa33AY.9.20.00011
ORF1ab/nsp31002T1002TacAacG33B.1.1.10.00098
ORF1ab/nsp31002T1002AAcaGca33B.1.20.000026
ORF1ab/nsp31002T1002TacAacG23B.1.2430.000139
ORF1ab/nsp31002T1002TacAacT13B.1.2430.00007
ORF1ab/nsp31002T1002IaCaaTa33B.1.2580.0002
ORF1ab/nsp31002T1002TacAacT33B.1.4700.004213
ORF1ab/nsp31002T1002IaCaaTa33B.1.6210.000266
ORF1ab/nsp31002T1002TacAacG33B.1.6310.010101
ORF1ab/nsp31002T1002IaCaaTa33D.20.000225
ORF1ab/nsp31002T1002IaCaaTa22A.2.5.20.003145
ORF1ab/nsp31002T1002IaCaaTa22A.210.00554
ORF1ab/nsp31002T1002IaCaaTa22AD.20.000438
ORF1ab/nsp31002T1002KaCaaAa22All0
ORF1ab/nsp31002T1002VACaGTa22All0
ORF1ab/nsp31002T1002IaCaaTa22AY.10.000791
ORF1ab/nsp31002T1002TacAacG22AY.10.000791
ORF1ab/nsp31002T1002IaCaaTa22AY.1010.000981
ORF1ab/nsp31002T1002TacAacG12AY.1130.000142
ORF1ab/nsp31002T1002TacAacT12AY.1130.000142
ORF1ab/nsp31002T1002AAcaGca22AY.1170.000169
ORF1ab/nsp31002T1002TacAacC22AY.1180.000125
ORF1ab/nsp31002T1002TacAacG22AY.130.000322
ORF1ab/nsp31002T1002IaCaaTa22AY.230.000139
ORF1ab/nsp31002T1002AAcaGca22AY.250.000012
ORF1ab/nsp31002T1002IaCaaTa22AY.260.000057
ORF1ab/nsp31002T1002IaCaaTa22AY.300.000791
ORF1ab/nsp31002T1002IaCaaTa22AY.4.20.000043
ORF1ab/nsp31002T1002AAcaGca22AY.46.60.000144
ORF1ab/nsp31002T1002IaCaaTa22AY.520.001629
ORF1ab/nsp31002T1002IaCaaTa22AY.750.000112
ORF1ab/nsp31002T1002TacAacG22AY.840.000875
ORF1ab/nsp31002T1002TacAacT22AY.870.001665
ORF1ab/nsp31002T1002IaCaaTa22AY.9.10.000167
ORF1ab/nsp31002T1002IaCaaTa22AZ.20.001642
ORF1ab/nsp31002T1002TacAacG22B.1.10.000036
ORF1ab/nsp31002T1002IaCaaTa22B.1.1.2840.000215
ORF1ab/nsp31002T1002TacAacG22B.1.1.5190.000079
ORF1ab/nsp31002T1002IaCaaTa22B.1.1.5250.010929
ORF1ab/nsp31002T1002IaCaaTa22B.1.1.700.000682
ORF1ab/nsp31002T1002IaCaaTa22B.1.160.320.008584
ORF1ab/nsp31002T1002TacAacG22B.1.1690.029851
ORF1ab/nsp31002T1002TacAacT12B.1.20.000009
ORF1ab/nsp31002T1002TacAacG12B.1.20.000009
ORF1ab/nsp31002T1002TacAacG22B.1.2210.000142
ORF1ab/nsp31002T1002IaCaaTa22B.1.2310.064516
ORF1ab/nsp31002T1002IaCaaTa22B.1.2340.000264
ORF1ab/nsp31002T1002IaCaaTa22B.1.2430.000139
ORF1ab/nsp31002T1002delACA---22B.1.360.000292
ORF1ab/nsp31002T1002AAcaGca22B.1.4270.000101
ORF1ab/nsp31002T1002IaCaaTa22B.1.564.10.003155
ORF1ab/nsp31002T1002IaCaaTa22B.1.5650.001621
ORF1ab/nsp31002T1002delACA---22B.1.617.20.000008
ORF1ab/nsp31002T1002IaCaaTa22B.400.000729
ORF1ab/nsp31002T1002IaCaaTa22C.360.001821
ORF1ab/nsp31002T1002AAcaGca22P.10.000032
ORF1ab/nsp31002T1002IaCaaTa22P.1.100.000539
ORF1ab/nsp31002T1002TacAacG22P.1.60.003891
ORF1ab/nsp31002T1002IaCaaTa11A0.000387
ORF1ab/nsp31002T1002IaCaaTa11A.20.000662
ORF1ab/nsp31002T1002delACA---11A.2.20.001689
ORF1ab/nsp31002T1002IaCaaTa11A.2.50.000499
ORF1ab/nsp31002T1002IaCaaTa11AE.80.000489
ORF1ab/nsp31002T1002NaCAaAC11All0
ORF1ab/nsp31002T1002AAcaGca11AN.10.02
ORF1ab/nsp31002T1002IaCaaTa11AY.100.00053
ORF1ab/nsp31002T1002IaCaaTa11AY.1040.001984
ORF1ab/nsp31002T1002TacAacG11AY.1060.000335
ORF1ab/nsp31002T1002IaCaaTa11AY.1060.000335
ORF1ab/nsp31002T1002IaCaaTa11AY.1130.000142
ORF1ab/nsp31002T1002AAcaGca11AY.1160.000287
ORF1ab/nsp31002T1002AAcaGca11AY.116.10.000311
ORF1ab/nsp31002T1002IaCaaTa11AY.1170.000085
ORF1ab/nsp31002T1002AAcaGca11AY.1180.000063
ORF1ab/nsp31002T1002TacAacC11AY.1190.000035
ORF1ab/nsp31002T1002IaCaaTa11AY.1190.000035
ORF1ab/nsp31002T1002IaCaaTa11AY.120.000316
ORF1ab/nsp31002T1002AAcaGca11AY.1200.000037
ORF1ab/nsp31002T1002TacAacT11AY.1200.000037
ORF1ab/nsp31002T1002IaCaaTa11AY.120.10.000321
ORF1ab/nsp31002T1002IaCaaTa11AY.1210.000135
ORF1ab/nsp31002T1002IaCaaTa11AY.160.00038
ORF1ab/nsp31002T1002IaCaaTa11AY.240.000431
ORF1ab/nsp31002T1002TacAacG11AY.250.000006
ORF1ab/nsp31002T1002TacAacG11AY.270.000065
ORF1ab/nsp31002T1002IaCaaTa11AY.290.000016
ORF1ab/nsp31002T1002AAcaGca11AY.30.00001
ORF1ab/nsp31002T1002AAcaGca11AY.3.10.000085
ORF1ab/nsp31002T1002TacAacT11AY.3.10.000085
ORF1ab/nsp31002T1002AAcaGca11AY.330.000067
ORF1ab/nsp31002T1002IaCaaTa11AY.4.10.000737
ORF1ab/nsp31002T1002IaCaaTa11AY.4.2.10.000149
ORF1ab/nsp31002T1002IaCaaTa11AY.420.00004
ORF1ab/nsp31002T1002RaCaaGa11AY.430.000004
ORF1ab/nsp31002T1002AAcaGca11AY.450.000122
ORF1ab/nsp31002T1002AAcaGca11AY.460.000104
ORF1ab/nsp31002T1002IaCaaTa11AY.46.20.000635
ORF1ab/nsp31002T1002IaCaaTa11AY.470.000031
ORF1ab/nsp31002T1002IaCaaTa11AY.560.001605
ORF1ab/nsp31002T1002AAcaGca11AY.610.000105
ORF1ab/nsp31002T1002IaCaaTa11AY.610.000105
ORF1ab/nsp31002T1002IaCaaTa11AY.70.000196
ORF1ab/nsp31002T1002IaCaaTa11AY.7.10.000113
ORF1ab/nsp31002T1002AAcaGca11AY.700.000209
ORF1ab/nsp31002T1002IaCaaTa11AY.740.000116
ORF1ab/nsp31002T1002delACA---11AY.750.000056
ORF1ab/nsp31002T1002IaCaaTa11AY.770.001127
ORF1ab/nsp31002T1002IaCaaTa11AY.840.000437
ORF1ab/nsp31002T1002TacAacC11AY.850.000427
ORF1ab/nsp31002T1002delACA---11AY.850.000427
ORF1ab/nsp31002T1002TacAacG11AY.90.000068
ORF1ab/nsp31002T1002IaCaaTa11AY.91.10.004065
ORF1ab/nsp31002T1002TacAacG11AY.920.000287
ORF1ab/nsp31002T1002IaCaaTa11AY.950.000761
ORF1ab/nsp31002T1002IaCaaTa11AY.99.20.000092
ORF1ab/nsp31002T1002SaCAaGC11B.10.000009
ORF1ab/nsp31002T1002AAcaGca11B.1.10.000018
ORF1ab/nsp31002T1002delACA---11B.1.1.1390.022727
ORF1ab/nsp31002T1002delACA---11B.1.1.1420.017544
ORF1ab/nsp31002T1002IaCaaTa11B.1.1.1590.004673
ORF1ab/nsp31002T1002delACA---11B.1.1.1590.004673
ORF1ab/nsp31002T1002AAcaGca11B.1.1.1700.001247
ORF1ab/nsp31002T1002IaCaaTa11B.1.1.2220.000204
ORF1ab/nsp31002T1002TacAacG11B.1.1.2220.000204
ORF1ab/nsp31002T1002IaCaaTa11B.1.1.2280.003049
ORF1ab/nsp31002T1002VACaGTa11B.1.1.2320.001815
ORF1ab/nsp31002T1002AAcaGca11B.1.1.2770.000759
ORF1ab/nsp31002T1002IaCaaTa11B.1.1.3010.001179
ORF1ab/nsp31002T1002TacAacG11B.1.1.3290.003846
ORF1ab/nsp31002T1002TacAacC11B.1.1.3370.003597
ORF1ab/nsp31002T1002IaCaaTa11B.1.1.340.013158
ORF1ab/nsp31002T1002IaCaaTa11B.1.1.3970.002252
ORF1ab/nsp31002T1002AAcaGca11B.1.1.5190.00004
ORF1ab/nsp31002T1002SAcaTca11B.1.1.70.000001
ORF1ab/nsp31002T1002KaCaaAa11B.1.1.70.000001
ORF1ab/nsp31002T1002IaCaaTa11B.1.1110.001175
ORF1ab/nsp31002T1002TacAacG11B.1.1390.000733
ORF1ab/nsp31002T1002AAcaGca11B.1.1600.000031
ORF1ab/nsp31002T1002TacAacT11B.1.160.200.008929
ORF1ab/nsp31002T1002KaCaaAa11B.1.177.120.000152
ORF1ab/nsp31002T1002IaCaaTa11B.1.177.150.000631
ORF1ab/nsp31002T1002AAcaGca11B.1.177.430.001477
ORF1ab/nsp31002T1002IaCaaTa11B.1.177.560.000668
ORF1ab/nsp31002T1002AAcaGca11B.1.177.570.000281
ORF1ab/nsp31002T1002TacAacG11B.1.177.810.000189
ORF1ab/nsp31002T1002AAcaGca11B.1.177.810.000189
ORF1ab/nsp31002T1002TacAacG11B.1.177.820.000477
ORF1ab/nsp31002T1002RaCaaGa11B.1.177.860.000183
ORF1ab/nsp31002T1002IaCaaTa11B.1.1790.003759
ORF1ab/nsp31002T1002TacAacG11B.1.2340.000132
ORF1ab/nsp31002T1002IaCaaTa11B.1.2400.000216
ORF1ab/nsp31002T1002NaCAaAC11B.1.2580.000067
ORF1ab/nsp31002T1002IaCaaTa11B.1.258.170.000104
ORF1ab/nsp31002T1002IaCaaTa11B.1.2650.001271
ORF1ab/nsp31002T1002IaCaaTa11B.1.2890.00266
ORF1ab/nsp31002T1002IaCaaTa11B.1.3110.000275
ORF1ab/nsp31002T1002delACA---11B.1.3190.003049
ORF1ab/nsp31002T1002TacAacG11B.1.351.50.0006
ORF1ab/nsp31002T1002IaCaaTa11B.1.36.190.009259
ORF1ab/nsp31002T1002IaCaaTa11B.1.36.310.001751
ORF1ab/nsp31002T1002IaCaaTa11B.1.3620.001541
ORF1ab/nsp31002T1002AAcaGca11B.1.3690.000285
ORF1ab/nsp31002T1002IaCaaTa11B.1.3960.000706
ORF1ab/nsp31002T1002IaCaaTa11B.1.4130.004255
ORF1ab/nsp31002T1002IaCaaTa11B.1.4680.005714
ORF1ab/nsp31002T1002TacAacG11B.1.5260.000024
ORF1ab/nsp31002T1002AAcaGca11B.1.5260.000024
ORF1ab/nsp31002T1002delACA---11B.1.5460.003704
ORF1ab/nsp31002T1002IaCaaTa11B.1.5660.019231
ORF1ab/nsp31002T1002IaCaaTa11B.1.5750.000303
ORF1ab/nsp31002T1002IaCaaTa11B.1.5760.000907
ORF1ab/nsp31002T1002TacAacT11B.1.5760.000907
ORF1ab/nsp31002T1002AAcaGca11B.1.5770.000687
ORF1ab/nsp31002T1002TacAacT11B.1.5960.000087
ORF1ab/nsp31002T1002TacAacT11B.1.6090.000479
ORF1ab/nsp31002T1002SAcaTca11B.1.617.20.000004
ORF1ab/nsp31002T1002TacAacT11B.1.6210.000089
ORF1ab/nsp31002T1002IaCaaTa11B.1.621.10.000506
ORF1ab/nsp31002T1002AAcaGca11B.1.6370.000073
ORF1ab/nsp31002T1002delACA---11B.150.017544
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