CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 10

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp310D10DD828DsyngaCgaT11324411324412747-2749
ORF1ab/nsp310D10YD828YnonsynGacTac1114111412747-2749
ORF1ab/nsp310D10ND828NnonsynGacAac5745720.9965162747-2749
ORF1ab/nsp310D10ND828NnonsynGaCAaT57420.003484322747-2749
ORF1ab/nsp310D10GD828GnonsyngAcgGc1551530.9870972747-2749
ORF1ab/nsp310D10GD828GnonsyngACgGA15510.006451612747-2749
ORF1ab/nsp310D10GD828GnonsyngACgGT15510.006451612747-2749
ORF1ab/nsp310D10delD828deldelGAC---606012747-2749
ORF1ab/nsp310D10AD828AnonsyngAcgCc404012747-2749
ORF1ab/nsp310D10ED828EnonsyngaCgaA25210.842747-2749
ORF1ab/nsp310D10ED828EnonsyngaCgaG2540.162747-2749
ORF1ab/nsp310D10VD828VnonsyngAcgTc17150.8823532747-2749
ORF1ab/nsp310D10VD828VnonsyngACgTT1710.05882352747-2749
ORF1ab/nsp310D10VD828VnonsyngACgTA1710.05882352747-2749
ORF1ab/nsp310D10HD828HnonsynGacCac7712747-2749
ORF1ab/nsp310D10del1D828del1delGac-ac640.6666672747-2749
ORF1ab/nsp310D10del1D828del1delGaCCa-620.3333332747-2749
ORF1ab/nsp310D10ID828InonsynGACATA420.52747-2749
ORF1ab/nsp310D10ID828InonsynGAcATc410.252747-2749
ORF1ab/nsp310D10ID828InonsynGACATT410.252747-2749
ORF1ab/nsp310D10KD828KnonsynGaCAaA2212747-2749
ORF1ab/nsp310D10RD828RnonsynGACAGA1112747-2749
ORF1ab/nsp310D10LD828LnonsynGACTTA1112747-2749
ORF1ab/nsp310D10SD828SnonsynGAcAGc1112747-2749

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp310D10DgaCgaT113244113244All0.021659
ORF1ab/nsp310D10DgaCgaT6050660506P.10.953211
ORF1ab/nsp310D10DgaCgaT2085020850P.1.140.996654
ORF1ab/nsp310D10DgaCgaT54725472P.1.170.88515
ORF1ab/nsp310D10DgaCgaT41454145P.1.150.963058
ORF1ab/nsp310D10DgaCgaT34163416P.1.100.920507
ORF1ab/nsp310D10DgaCgaT30903090P.1.70.98659
ORF1ab/nsp310D10DgaCgaT29172917P.1.10.92662
ORF1ab/nsp310D10DgaCgaT25762576P.1.160.963711
ORF1ab/nsp310D10DgaCgaT18041804B.1.617.20.006793
ORF1ab/nsp310D10DgaCgaT17411741P.1.120.842691
ORF1ab/nsp310D10DgaCgaT11411141P.1.17.10.99825
ORF1ab/nsp310D10YGacTac11141114All0.000213
ORF1ab/nsp310D10DgaCgaT10211021P.1.130.917341
ORF1ab/nsp310D10DgaCgaT10201020P.1.40.996094
ORF1ab/nsp310D10DgaCgaT859859P.1.20.993064
ORF1ab/nsp310D10NGacAac572574All0.000109
ORF1ab/nsp310D10NGaCAaT2574All0
ORF1ab/nsp310D10YGacTac542542B.1.4290.012753
ORF1ab/nsp310D10DgaCgaT514514P.1.61
ORF1ab/nsp310D10NGacAac457457AY.470.014215
ORF1ab/nsp310D10DgaCgaT336336AY.430.001489
ORF1ab/nsp310D10YGacTac296296B.1.2210.021026
ORF1ab/nsp310D10DgaCgaT209209P.1.81
ORF1ab/nsp310D10DgaCgaT206206P.1.90.990385
ORF1ab/nsp310D10DgaCgaT187187B.1.351.20.056581
ORF1ab/nsp310D10GgAcgGc153155All0.000029
ORF1ab/nsp310D10GgACgGA1155All0
ORF1ab/nsp310D10GgACgGT1155All0
ORF1ab/nsp310D10DgaCgaT137137B.1.1.70.000123
ORF1ab/nsp310D10DgaCgaT101101P.1.10.10.821138
ORF1ab/nsp310D10DgaCgaT9898P.1.111
ORF1ab/nsp310D10DgaCgaT8484B.1.4290.001976
ORF1ab/nsp310D10DgaCgaT7474B.10.000678
ORF1ab/nsp310D10delGAC---6060All0.000011
ORF1ab/nsp310D10DgaCgaT6060B.1.6090.028763
ORF1ab/nsp310D10DgaCgaT5959AY.4.2.10.00879
ORF1ab/nsp310D10DgaCgaT5959B.1.10.00107
ORF1ab/nsp310D10GgAcgGc5151B.1.1.70.000046
ORF1ab/nsp310D10YGacTac4242B.1.20.00037
ORF1ab/nsp310D10AgAcgCc4040All0.000008
ORF1ab/nsp310D10DgaCgaT4040AY.440.000243
ORF1ab/nsp310D10DgaCgaT3636AY.70.007056
ORF1ab/nsp310D10DgaCgaT3232AY.1020.000848
ORF1ab/nsp310D10NGacAac3232AY.40.00005
ORF1ab/nsp310D10DgaCgaT3131AY.140.002728
ORF1ab/nsp310D10DgaCgaT2929P.1.31
ORF1ab/nsp310D10YGacTac2626B.1.4270.001313
ORF1ab/nsp310D10YGacTac2626R.10.00234
ORF1ab/nsp310D10EgaCgaA2125All0.000004
ORF1ab/nsp310D10EgaCgaG425All0.000001
ORF1ab/nsp310D10YGacTac2525AY.420.001006
ORF1ab/nsp310D10DgaCgaT2424AY.40.000037
ORF1ab/nsp310D10DgaCgaT2323P.1.10.20.958333
ORF1ab/nsp310D10DgaCgaT1919C.370.002205
ORF1ab/nsp310D10VgAcgTc1517All0.000003
ORF1ab/nsp310D10VgACgTA117All0
ORF1ab/nsp310D10VgACgTT117All0
ORF1ab/nsp310D10DgaCgaT1717B.1.1.280.005291
ORF1ab/nsp310D10GgAcgGc1616AY.1030.000099
ORF1ab/nsp310D10DgaCgaT1616B.1.1.2890.033333
ORF1ab/nsp310D10NGacAac1616B.1.4160.020305
ORF1ab/nsp310D10AgAcgCc1616B.1.617.20.00006
ORF1ab/nsp310D10DgaCgaT1515AY.390.000371
ORF1ab/nsp310D10DgaCgaT1313AY.1030.000081
ORF1ab/nsp310D10YGacTac1313AY.4.20.000282
ORF1ab/nsp310D10GgAcgGc1313AY.98.10.00063
ORF1ab/nsp310D10YGacTac1313B.1.258.170.001352
ORF1ab/nsp310D10DgaCgaT1313P.1.51
ORF1ab/nsp310D10DgaCgaT1212B.1.1.5280.057692
ORF1ab/nsp310D10YGacTac1111AY.40.000017
ORF1ab/nsp310D10delGAC---1111B.10.000101
ORF1ab/nsp310D10YGacTac1010B.1.1.70.000009
ORF1ab/nsp310D10DgaCgaT1010B.1.20.000088
ORF1ab/nsp310D10DgaCgaT1010B.1.5260.000235
ORF1ab/nsp310D10EgaCgaA99AY.40.000014
ORF1ab/nsp310D10YGacTac99B.10.000082
ORF1ab/nsp310D10DgaCgaT99B.1.1.1610.031802
ORF1ab/nsp310D10DgaCgaT99B.1.6000.052632
ORF1ab/nsp310D10YGacTac99B.1.617.20.000034
ORF1ab/nsp310D10DgaCgaT88AY.16.10.003759
ORF1ab/nsp310D10NGacAac88B.1.1600.00025
ORF1ab/nsp310D10HGacCac77All0.000001
ORF1ab/nsp310D10DgaCgaT77AY.290.00011
ORF1ab/nsp310D10NGacAac77B.1.10.000127
ORF1ab/nsp310D10VgAcgTc77B.1.1.10.002287
ORF1ab/nsp310D10NGacAac77B.1.617.20.000026
ORF1ab/nsp310D10DgaCgaT77B.1.6210.00062
ORF1ab/nsp310D10del1Gac-ac46All0.000001
ORF1ab/nsp310D10del1GaCCa-26All0
ORF1ab/nsp310D10GgAcgGc66AY.30.00006
ORF1ab/nsp310D10YGacTac66AY.390.000148
ORF1ab/nsp310D10DgaCgaT66AY.400.005786
ORF1ab/nsp310D10delGAC---66B.1.1.70.000005
ORF1ab/nsp310D10GgAcgGc66B.1.177.210.000459
ORF1ab/nsp310D10YGacTac66B.1.5960.000523
ORF1ab/nsp310D10GgAcgGc55AY.250.00003
ORF1ab/nsp310D10DgaCgaT55AY.30.00005
ORF1ab/nsp310D10GgAcgGc55AY.390.000124
ORF1ab/nsp310D10DgaCgaT55AY.420.000201
ORF1ab/nsp310D10GgAcgGc55AY.440.00003
ORF1ab/nsp310D10YGacTac55AY.440.00003
ORF1ab/nsp310D10DgaCgaT55AY.99.20.000461
ORF1ab/nsp310D10GgAcgGc35B.10.000027
ORF1ab/nsp310D10GgACgGT15B.10.000009
ORF1ab/nsp310D10GgACgGA15B.10.000009
ORF1ab/nsp310D10YGacTac55B.1.1.2320.009074
ORF1ab/nsp310D10NGacAac45B.1.1.70.000004
ORF1ab/nsp310D10NGaCAaT15B.1.1.70.000001
ORF1ab/nsp310D10DgaCgaT55B.1.1770.000066
ORF1ab/nsp310D10DgaCgaT55B.1.2430.000348
ORF1ab/nsp310D10DgaCgaT55B.1.3490.003574
ORF1ab/nsp310D10DgaCgaT55B.1.5820.002453
ORF1ab/nsp310D10delGAC---440.222222
ORF1ab/nsp310D10IGACATA24All0
ORF1ab/nsp310D10IGACATT14All0
ORF1ab/nsp310D10IGAcATc14All0
ORF1ab/nsp310D10YGacTac44AY.1030.000025
ORF1ab/nsp310D10DgaCgaT44AY.230.000279
ORF1ab/nsp310D10DgaCgaT44AY.250.000024
ORF1ab/nsp310D10YGacTac44AY.380.001997
ORF1ab/nsp310D10GgAcgGc44AY.430.000018
ORF1ab/nsp310D10AgAcgCc44AY.430.000018
ORF1ab/nsp310D10GgAcgGc44AY.930.001092
ORF1ab/nsp310D10NGacAac44B.10.000037
ORF1ab/nsp310D10AgAcgCc44B.10.000037
ORF1ab/nsp310D10DgaCgaT44B.1.177.750.004162
ORF1ab/nsp310D10YGacTac44B.1.2410.003247
ORF1ab/nsp310D10DgaCgaT44B.1.2580.000266
ORF1ab/nsp310D10DgaCgaT44B.1.360.000584
ORF1ab/nsp310D10GgAcgGc44B.1.617.20.000015
ORF1ab/nsp310D10NGacAac44C.40.04
ORF1ab/nsp310D10DgaCgaT44R.10.00036
ORF1ab/nsp310D10GgAcgGc33AY.1020.00008
ORF1ab/nsp310D10YGacTac33AY.200.000117
ORF1ab/nsp310D10AgAcgCc33AY.30.00003
ORF1ab/nsp310D10YGacTac33AY.30.00003
ORF1ab/nsp310D10DgaCgaT33AY.4.20.000065
ORF1ab/nsp310D10YGacTac33AY.430.000013
ORF1ab/nsp310D10DgaCgaT33AY.650.001599
ORF1ab/nsp310D10DgaCgaT33AY.9.10.000251
ORF1ab/nsp310D10DgaCgaT33B0.000383
ORF1ab/nsp310D10delGAC---33B.1.10.000054
ORF1ab/nsp310D10DgaCgaT33B.1.1.2630.004673
ORF1ab/nsp310D10delGAC---33B.1.1.330.001263
ORF1ab/nsp310D10DgaCgaT33B.1.1.5070.026087
ORF1ab/nsp310D10VgACgTA13B.1.1.70.000001
ORF1ab/nsp310D10VgAcgTc13B.1.1.70.000001
ORF1ab/nsp310D10VgACgTT13B.1.1.70.000001
ORF1ab/nsp310D10delGAC---33B.1.1770.00004
ORF1ab/nsp310D10delGAC---33B.1.4290.000071
ORF1ab/nsp310D10YGacTac33B.1.617.10.000387
ORF1ab/nsp310D10DgaCgaT33B.1.6360.020134
ORF1ab/nsp310D10DgaCgaT33C.37.10.007853
ORF1ab/nsp310D10DgaCgaT33P.20.00056
ORF1ab/nsp310D10del1GaCCa-220.111111
ORF1ab/nsp310D10DgaCgaT22A.2.50.000998
ORF1ab/nsp310D10KGaCAaA22All0
ORF1ab/nsp310D10YGacTac22AY.1000.000092
ORF1ab/nsp310D10DgaCgaT22AY.1000.000092
ORF1ab/nsp310D10YGacTac22AY.1020.000053
ORF1ab/nsp310D10YGacTac22AY.1060.00067
ORF1ab/nsp310D10DgaCgaT22AY.1200.000074
ORF1ab/nsp310D10AgAcgCc22AY.1200.000074
ORF1ab/nsp310D10NGacAac22AY.120.20.002571
ORF1ab/nsp310D10GgAcgGc22AY.20.000712
ORF1ab/nsp310D10YGacTac22AY.250.000012
ORF1ab/nsp310D10NGacAac22AY.250.000012
ORF1ab/nsp310D10NGacAac22AY.39.10.000079
ORF1ab/nsp310D10AgAcgCc22AY.40.000003
ORF1ab/nsp310D10GgAcgGc22AY.40.000003
ORF1ab/nsp310D10YGacTac22AY.4.2.10.000298
ORF1ab/nsp310D10del1Gac-ac22AY.440.000012
ORF1ab/nsp310D10DgaCgaT22AY.46.40.000329
ORF1ab/nsp310D10EgaCgaA22AY.50.000041
ORF1ab/nsp310D10NGacAac22AY.530.000575
ORF1ab/nsp310D10DgaCgaT22AY.590.001059
ORF1ab/nsp310D10DgaCgaT22AY.610.00021
ORF1ab/nsp310D10GgAcgGc22AY.720.002721
ORF1ab/nsp310D10YGacTac22AY.750.000112
ORF1ab/nsp310D10NGacAac22AY.90.000135
ORF1ab/nsp310D10DgaCgaT22AY.98.10.000097
ORF1ab/nsp310D10VgAcgTc22B0.000256
ORF1ab/nsp310D10EgaCgaA22B.10.000018
ORF1ab/nsp310D10HGacCac22B.10.000018
ORF1ab/nsp310D10GgAcgGc22B.1.10.000036
ORF1ab/nsp310D10YGacTac22B.1.10.000036
ORF1ab/nsp310D10DgaCgaT22B.1.1.2200.003717
ORF1ab/nsp310D10YGacTac22B.1.1.280.000622
ORF1ab/nsp310D10delGAC---22B.1.1.3150.016949
ORF1ab/nsp310D10delGAC---22B.1.1.3480.001592
ORF1ab/nsp310D10AgAcgCc22B.1.1.70.000002
ORF1ab/nsp310D10EgaCgaA22B.1.1.70.000002
ORF1ab/nsp310D10HGacCac22B.1.1.70.000002
ORF1ab/nsp310D10IGACATA12B.1.1.70.000001
ORF1ab/nsp310D10IGACATT12B.1.1.70.000001
ORF1ab/nsp310D10NGacAac22B.1.1770.000026
ORF1ab/nsp310D10YGacTac22B.1.1770.000026
ORF1ab/nsp310D10DgaCgaT22B.1.177.730.001133
ORF1ab/nsp310D10GgAcgGc22B.1.20.000018
ORF1ab/nsp310D10EgaCgaG12B.1.20.000009
ORF1ab/nsp310D10EgaCgaA12B.1.20.000009
ORF1ab/nsp310D10DgaCgaT22B.1.3510.000059
ORF1ab/nsp310D10NGacAac22B.1.36.210.00432
ORF1ab/nsp310D10YGacTac22B.1.4040.002604
ORF1ab/nsp310D10delGAC---22B.1.4240.016129
ORF1ab/nsp310D10DgaCgaT22B.1.5330.019231
ORF1ab/nsp310D10YGacTac22B.1.5750.000607
ORF1ab/nsp310D10DgaCgaT22B.1.6230.001073
ORF1ab/nsp310D10delGAC---22N.60.014184
ORF1ab/nsp310D10delGAC---22P.10.000032
ORF1ab/nsp310D10DgaCgaT22Q.80.00033
ORF1ab/nsp310D10EgaCgaG110.055556
ORF1ab/nsp310D10delGAC---11A0.000387
ORF1ab/nsp310D10YGacTac11A.20.000662
ORF1ab/nsp310D10GgAcgGc11A.2.40.003367
ORF1ab/nsp310D10VgAcgTc11A.2.50.000499
ORF1ab/nsp310D10RGACAGA11All0
ORF1ab/nsp310D10LGACTTA11All0
ORF1ab/nsp310D10SGAcAGc11All0
ORF1ab/nsp310D10YGacTac11AY.100.00053
ORF1ab/nsp310D10NGacAac11AY.1000.000046
ORF1ab/nsp310D10GgAcgGc11AY.1000.000046
ORF1ab/nsp310D10DgaCgaT11AY.1010.00049
ORF1ab/nsp310D10NGacAac11AY.1030.000006
ORF1ab/nsp310D10YGacTac11AY.1050.000643
ORF1ab/nsp310D10NGacAac11AY.1050.000643
ORF1ab/nsp310D10DgaCgaT11AY.1060.000335
ORF1ab/nsp310D10DgaCgaT11AY.1090.00074
ORF1ab/nsp310D10GgAcgGc11AY.1100.000113
ORF1ab/nsp310D10DgaCgaT11AY.1180.000063
ORF1ab/nsp310D10DgaCgaT11AY.1190.000035
ORF1ab/nsp310D10YGacTac11AY.1200.000037
ORF1ab/nsp310D10VgAcgTc11AY.1200.000037
ORF1ab/nsp310D10DgaCgaT11AY.120.20.001285
ORF1ab/nsp310D10YGacTac11AY.120.20.001285
ORF1ab/nsp310D10NGacAac11AY.130.000161
ORF1ab/nsp310D10NGacAac11AY.140.000088
ORF1ab/nsp310D10YGacTac11AY.190.00114
ORF1ab/nsp310D10DgaCgaT11AY.220.002092
ORF1ab/nsp310D10NGacAac11AY.230.00007
ORF1ab/nsp310D10YGacTac11AY.230.00007
ORF1ab/nsp310D10DgaCgaT11AY.23.10.000417
ORF1ab/nsp310D10delGAC---11AY.250.000006
ORF1ab/nsp310D10HGacCac11AY.260.000028
ORF1ab/nsp310D10NGacAac11AY.30.00001
ORF1ab/nsp310D10DgaCgaT11AY.3.10.000085
ORF1ab/nsp310D10YGacTac11AY.330.000067
ORF1ab/nsp310D10DgaCgaT11AY.330.000067
ORF1ab/nsp310D10DgaCgaT11AY.340.000097
ORF1ab/nsp310D10EgaCgaA11AY.360.000148
ORF1ab/nsp310D10DgaCgaT11AY.360.000148
ORF1ab/nsp310D10NGacAac11AY.360.000148
ORF1ab/nsp310D10GgAcgGc11AY.370.000316
ORF1ab/nsp310D10NGacAac11AY.380.000499
ORF1ab/nsp310D10EgaCgaG11AY.390.000025
ORF1ab/nsp310D10DgaCgaT11AY.39.10.00004
ORF1ab/nsp310D10GgAcgGc11AY.4.40.000409
ORF1ab/nsp310D10GgAcgGc11AY.4.50.000107
ORF1ab/nsp310D10delGAC---11AY.400.000964
ORF1ab/nsp310D10NGacAac11AY.430.000004
ORF1ab/nsp310D10IGAcATc11AY.430.000004
ORF1ab/nsp310D10EgaCgaA11AY.440.000006
ORF1ab/nsp310D10NGacAac11AY.440.000006
ORF1ab/nsp310D10DgaCgaT11AY.450.000122
ORF1ab/nsp310D10GgAcgGc11AY.450.000122
ORF1ab/nsp310D10GgAcgGc11AY.460.000104
ORF1ab/nsp310D10DgaCgaT11AY.460.000104
ORF1ab/nsp310D10DgaCgaT11AY.470.000031
ORF1ab/nsp310D10GgAcgGc11AY.50.000021
ORF1ab/nsp310D10DgaCgaT11AY.50.000021
ORF1ab/nsp310D10DgaCgaT11AY.5.30.000337
ORF1ab/nsp310D10DgaCgaT11AY.500.000799
ORF1ab/nsp310D10YGacTac11AY.520.000814
ORF1ab/nsp310D10AgAcgCc11AY.530.000288
ORF1ab/nsp310D10DgaCgaT11AY.550.000917
ORF1ab/nsp310D10DgaCgaT11AY.580.000907
ORF1ab/nsp310D10NGacAac11AY.60.000041
ORF1ab/nsp310D10DgaCgaT11AY.60.000041
ORF1ab/nsp310D10delGAC---11AY.60.000041
ORF1ab/nsp310D10delGAC---11AY.680.000274
ORF1ab/nsp310D10GgAcgGc11AY.680.000274
ORF1ab/nsp310D10del1Gac-ac11AY.7.20.000559
ORF1ab/nsp310D10DgaCgaT11AY.710.000475
ORF1ab/nsp310D10GgAcgGc11AY.750.000056
ORF1ab/nsp310D10DgaCgaT11AY.750.000056
ORF1ab/nsp310D10YGacTac11AY.75.10.00018
ORF1ab/nsp310D10NGacAac11AY.75.10.00018
ORF1ab/nsp310D10DgaCgaT11AY.850.000427
ORF1ab/nsp310D10GgAcgGc11AY.9.10.000084
ORF1ab/nsp310D10YGacTac11AY.9.20.000037
ORF1ab/nsp310D10delGAC---11AY.9.20.000037
ORF1ab/nsp310D10DgaCgaT11AY.920.000287
ORF1ab/nsp310D10DgaCgaT11AY.930.000273
ORF1ab/nsp310D10DgaCgaT11AY.980.000079
ORF1ab/nsp310D10delGAC---11AY.98.10.000048
ORF1ab/nsp310D10YGacTac11B0.000128
ORF1ab/nsp310D10SGAcAGc11B.10.000009
ORF1ab/nsp310D10KGaCAaA11B.10.000009
ORF1ab/nsp310D10RGACAGA11B.10.000009
ORF1ab/nsp310D10VgAcgTc11B.10.000009
ORF1ab/nsp310D10YGacTac11B.1.1.1740.003378
ORF1ab/nsp310D10NGacAac11B.1.1.2140.000055
ORF1ab/nsp310D10DgaCgaT11B.1.1.2140.000055
ORF1ab/nsp310D10DgaCgaT11B.1.1.2160.00089
ORF1ab/nsp310D10DgaCgaT11B.1.1.3030.002762
ORF1ab/nsp310D10DgaCgaT11B.1.1.3110.000358
ORF1ab/nsp310D10NGacAac11B.1.1.3220.008772
ORF1ab/nsp310D10DgaCgaT11B.1.1.3260.001761
ORF1ab/nsp310D10DgaCgaT11B.1.1.370.000193
ORF1ab/nsp310D10DgaCgaT11B.1.1.3880.045455
ORF1ab/nsp310D10DgaCgaT11B.1.1.4090.002833
ORF1ab/nsp310D10delGAC---11B.1.1.4160.000905
ORF1ab/nsp310D10YGacTac11B.1.1.4320.001266
ORF1ab/nsp310D10delGAC---11B.1.1.460.004367
ORF1ab/nsp310D10NGacAac11B.1.1.5190.00004
ORF1ab/nsp310D10AgAcgCc11B.1.1.5230.001563
ORF1ab/nsp310D10DgaCgaT11B.1.1.5230.001563
ORF1ab/nsp310D10DgaCgaT11B.1.1.5250.005464
ORF1ab/nsp310D10DgaCgaT11B.1.1.540.003021
ORF1ab/nsp310D10KGaCAaA11B.1.1.70.000001
ORF1ab/nsp310D10delGAC---11B.1.1.700.000341
ORF1ab/nsp310D10VgAcgTc11B.1.1.890.006061
ORF1ab/nsp310D10DgaCgaT11B.1.1600.000031
ORF1ab/nsp310D10DgaCgaT11B.1.160.160.000929
ORF1ab/nsp310D10DgaCgaT11B.1.1700.00431
ORF1ab/nsp310D10AgAcgCc11B.1.1770.000013
ORF1ab/nsp310D10GgAcgGc11B.1.1770.000013
ORF1ab/nsp310D10HGacCac11B.1.177.210.000076
ORF1ab/nsp310D10delGAC---11B.1.177.510.004566
ORF1ab/nsp310D10NGacAac11B.1.177.730.000566
ORF1ab/nsp310D10YGacTac11B.1.177.810.000189
ORF1ab/nsp310D10AgAcgCc11B.1.20.000009
ORF1ab/nsp310D10DgaCgaT11B.1.2120.016667
ORF1ab/nsp310D10DgaCgaT11B.1.2340.000132
ORF1ab/nsp310D10YGacTac11B.1.2390.001221
ORF1ab/nsp310D10DgaCgaT11B.1.2390.001221
ORF1ab/nsp310D10EgaCgaA11B.1.2580.000067
ORF1ab/nsp310D10YGacTac11B.1.2580.000067
ORF1ab/nsp310D10YGacTac11B.1.3010.005917
ORF1ab/nsp310D10del1Gac-ac11B.1.3110.000275
ORF1ab/nsp310D10DgaCgaT11B.1.3110.000275
ORF1ab/nsp310D10YGacTac11B.1.3510.00003
ORF1ab/nsp310D10NGacAac11B.1.360.000146
ORF1ab/nsp310D10YGacTac11B.1.360.000146
ORF1ab/nsp310D10YGacTac11B.1.3620.001541
ORF1ab/nsp310D10DgaCgaT11B.1.3690.000285
ORF1ab/nsp310D10AgAcgCc11B.1.3710.001122
ORF1ab/nsp310D10DgaCgaT11B.1.3750.00082
ORF1ab/nsp310D10DgaCgaT11B.1.3850.010638
ORF1ab/nsp310D10GgAcgGc11B.1.3960.000706
ORF1ab/nsp310D10DgaCgaT11B.1.3990.001934
ORF1ab/nsp310D10NGacAac11B.1.416.10.001563
ORF1ab/nsp310D10GgAcgGc11B.1.4270.00005
ORF1ab/nsp310D10GgAcgGc11B.1.4290.000024
ORF1ab/nsp310D10HGacCac11B.1.4530.003236
ORF1ab/nsp310D10EgaCgaA11B.1.4700.001404
ORF1ab/nsp310D10YGacTac11B.1.5250.000113
ORF1ab/nsp310D10GgAcgGc11B.1.5260.000024
ORF1ab/nsp310D10delGAC---11B.1.5260.000024
ORF1ab/nsp310D10DgaCgaT11B.1.5410.004425
ORF1ab/nsp310D10DgaCgaT11B.1.5460.003704
ORF1ab/nsp310D10delGAC---11B.1.5610.000397
ORF1ab/nsp310D10DgaCgaT11B.1.5650.00081
ORF1ab/nsp310D10delGAC---11B.1.5760.000907
ORF1ab/nsp310D10DgaCgaT11B.1.5760.000907
ORF1ab/nsp310D10DgaCgaT11B.1.5800.004065
ORF1ab/nsp310D10DgaCgaT11B.1.5960.000087
ORF1ab/nsp310D10DgaCgaT11B.1.6120.002653
ORF1ab/nsp310D10LGACTTA11B.1.617.20.000004
ORF1ab/nsp310D10IGACATA11B.1.617.20.000004
ORF1ab/nsp310D10DgaCgaT11B.1.6200.000946
ORF1ab/nsp310D10delGAC---11B.1.621.10.000506
ORF1ab/nsp310D10YGacTac11B.1.621.10.000506
ORF1ab/nsp310D10DgaCgaT11B.1.6280.000352
ORF1ab/nsp310D10DgaCgaT11B.1.6370.000073
ORF1ab/nsp310D10DgaCgaT11B.1.910.002075
ORF1ab/nsp310D10delGAC---11B.570.015152
ORF1ab/nsp310D10VgAcgTc11C.140.004329
ORF1ab/nsp310D10DgaCgaT11C.160.00106
ORF1ab/nsp310D10DgaCgaT11C.350.000774
ORF1ab/nsp310D10AgAcgCc11C.350.000774
ORF1ab/nsp310D10EgaCgaG11D.20.000075
ORF1ab/nsp310D10YGacTac11D.20.000075
ORF1ab/nsp310D10GgAcgGc11D.20.000075
ORF1ab/nsp310D10AgAcgCc11D.20.000075
ORF1ab/nsp310D10NGaCAaT11P.10.000016
ORF1ab/nsp310D10delGAC---11P.1.150.000232
ORF1ab/nsp310D10EgaCgaA11P.30.001595
ORF1ab/nsp310D10DgaCgaT11P.40.003802

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.