CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 61 | Y61Y | Y241Y | syn | taC | taT | 556 | 556 | 1 | 986-988 |
Details of the mutation Y61Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 556 | 556 | All | 0.000106 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 99 | 99 | B.1.1.7 | 0.000089 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 72 | 72 | B.34 | 0.986301 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 51 | 51 | AY.4 | 0.000079 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 24 | 24 | B.1.1 | 0.000435 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 24 | 24 | B.1.617.2 | 0.00009 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 22 | 22 | AY.119 | 0.000777 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 19 | 19 | AY.3 | 0.000189 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 14 | 14 | AY.43 | 0.000062 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 12 | 12 | AY.61 | 0.001257 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 11 | 11 | AY.25 | 0.000066 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 11 | 11 | P.1 | 0.000173 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 10 | 10 | B.1.1.397 | 0.022523 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 9 | 9 | AY.44 | 0.000055 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 8 | 8 | B.1.2 | 0.00007 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 7 | 7 | AY.103 | 0.000043 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 7 | 7 | B.1.258 | 0.000466 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 6 | 6 | AY.23 | 0.000418 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 6 | 6 | AY.39 | 0.000148 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 6 | 6 | B.1.177.54 | 0.003639 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 5 | 5 | AY.29 | 0.000079 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 5 | 5 | AY.4.2 | 0.000108 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 5 | 5 | B.1.576 | 0.004533 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 4 | 4 | AY.116 | 0.001147 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 4 | 4 | AY.75.1 | 0.000721 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 4 | 4 | B.1.351 | 0.000119 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 4 | 4 | P.1.4 | 0.003906 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 3 | 3 | AY.113 | 0.000427 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 3 | 3 | AY.24 | 0.001293 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 3 | 3 | AY.5.4 | 0.00083 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 3 | 3 | AY.55 | 0.002752 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 3 | 3 | B | 0.000383 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 3 | 3 | B.1.36.21 | 0.006479 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 2 | 2 | A.2 | 0.001324 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 2 | 2 | AY.94 | 0.000885 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 2 | 2 | B.1.362 | 0.003082 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 1 | 1 | AE.1 | 0.011364 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 1 | 1 | B.1.1.101 | 0.01 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 1 | 1 | B.1.1.412 | 0.007634 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 1 | 1 | B.1.177.20 | 0.001517 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 1 | 1 | B.1.223 | 0.002778 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 1 | 1 | B.1.413 | 0.004255 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp2 | 61 | Y61Y | taC | taT | 1 | 1 | P.2 | 0.000187 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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