CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = Y354C

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2354Y354CY534CnonsyntAttGt5525510.9981881865-1867
ORF1ab/nsp2354Y354CY534CnonsyntATtGC55210.001811591865-1867

Details of the mutation Y354C within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2354Y354CtAttGt551552All0.000105
ORF1ab/nsp2354Y354CtATtGC1552All0
ORF1ab/nsp2354Y354CtAttGt9898AY.250.000589
ORF1ab/nsp2354Y354CtAttGt8787AY.40.000135
ORF1ab/nsp2354Y354CtAttGt6767B.1.177.251
ORF1ab/nsp2354Y354CtAttGt6767C.350.051858
ORF1ab/nsp2354Y354CtAttGt6161B.1.1.70.000055
ORF1ab/nsp2354Y354CtAttGt2324B.1.617.20.000087
ORF1ab/nsp2354Y354CtATtGC124B.1.617.20.000004
ORF1ab/nsp2354Y354CtAttGt1717AY.30.000169
ORF1ab/nsp2354Y354CtAttGt1616AY.440.000097
ORF1ab/nsp2354Y354CtAttGt1515B.1.1770.000198
ORF1ab/nsp2354Y354CtAttGt1414AY.98.10.000678
ORF1ab/nsp2354Y354CtAttGt99AY.450.001095
ORF1ab/nsp2354Y354CtAttGt88AY.390.000198
ORF1ab/nsp2354Y354CtAttGt66AY.430.000027
ORF1ab/nsp2354Y354CtAttGt66B.10.000055
ORF1ab/nsp2354Y354CtAttGt55AY.470.000156
ORF1ab/nsp2354Y354CtAttGt44AY.1180.000251
ORF1ab/nsp2354Y354CtAttGt44AY.230.000279
ORF1ab/nsp2354Y354CtAttGt44R.10.00036
ORF1ab/nsp2354Y354CtAttGt33AY.1020.00008
ORF1ab/nsp2354Y354CtAttGt33AY.260.000085
ORF1ab/nsp2354Y354CtAttGt22AY.4.20.000043
ORF1ab/nsp2354Y354CtAttGt22AY.60.000082
ORF1ab/nsp2354Y354CtAttGt22B.1.20.000018
ORF1ab/nsp2354Y354CtAttGt22B.1.36.290.001035
ORF1ab/nsp2354Y354CtAttGt11AY.1000.000046
ORF1ab/nsp2354Y354CtAttGt11AY.1030.000006
ORF1ab/nsp2354Y354CtAttGt11AY.1100.000113
ORF1ab/nsp2354Y354CtAttGt11AY.1130.000142
ORF1ab/nsp2354Y354CtAttGt11AY.1170.000085
ORF1ab/nsp2354Y354CtAttGt11AY.290.000016
ORF1ab/nsp2354Y354CtAttGt11AY.840.000437
ORF1ab/nsp2354Y354CtAttGt11AY.90.000068
ORF1ab/nsp2354Y354CtAttGt11B0.000128
ORF1ab/nsp2354Y354CtAttGt11B.1.1.2400.004695
ORF1ab/nsp2354Y354CtAttGt11B.1.1.250.000569
ORF1ab/nsp2354Y354CtAttGt11B.1.1.3540.004386
ORF1ab/nsp2354Y354CtAttGt11B.1.1.700.000341
ORF1ab/nsp2354Y354CtAttGt11B.1.177.170.000821
ORF1ab/nsp2354Y354CtAttGt11B.1.2210.000071
ORF1ab/nsp2354Y354CtAttGt11B.1.2430.00007
ORF1ab/nsp2354Y354CtAttGt11B.1.2580.000067
ORF1ab/nsp2354Y354CtAttGt11B.1.4270.00005
ORF1ab/nsp2354Y354CtAttGt11B.1.4330.003195
ORF1ab/nsp2354Y354CtAttGt11B.1.5260.000024
ORF1ab/nsp2354Y354CtAttGt11B.1.6210.000089
ORF1ab/nsp2354Y354CtAttGt11C.360.000911
ORF1ab/nsp2354Y354CtAttGt11D.20.000075
ORF1ab/nsp2354Y354CtAttGt11P.10.000016
ORF1ab/nsp2354Y354CtAttGt11P.1.70.000319
ORF1ab/nsp2354Y354CtAttGt11P.1.90.004808