CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = Y316del2

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2316Y316del2Y496del2delTAt--t420.51751-1753
ORF1ab/nsp2316Y316del2Y496del2delTAT--A410.251751-1753
ORF1ab/nsp2316Y316del2Y496del2deltATt--410.251751-1753

Details of the mutation Y316del2 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2316Y316del2TAt--t24All0
ORF1ab/nsp2316Y316del2TAT--A14All0
ORF1ab/nsp2316Y316del2tATt--14All0
ORF1ab/nsp2316Y316del2tATt--11B.1.1.70.000001
ORF1ab/nsp2316Y316del2TAt--t11B.1.5460.003704
ORF1ab/nsp2316Y316del2TAt--t11B.1.5960.000087
ORF1ab/nsp2316Y316del2TAT--A11B.1.617.10.000129