CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = Y16Y

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp216Y16YY196YsyntaCtaT310331031851-853

Details of the mutation Y16Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp216Y16YtaCtaT31033103All0.000593
ORF1ab/nsp216Y16YtaCtaT10151015AY.1030.006302
ORF1ab/nsp216Y16YtaCtaT251251B.1.1.70.000225
ORF1ab/nsp216Y16YtaCtaT228228AY.110.305221
ORF1ab/nsp216Y16YtaCtaT216216B.1.6180.870968
ORF1ab/nsp216Y16YtaCtaT145145AY.440.000883
ORF1ab/nsp216Y16YtaCtaT123123P.1.160.046016
ORF1ab/nsp216Y16YtaCtaT113113AY.40.000176
ORF1ab/nsp216Y16YtaCtaT106106B.1.6370.007746
ORF1ab/nsp216Y16YtaCtaT8181B.1.5750.024575
ORF1ab/nsp216Y16YtaCtaT7575B.1.617.20.000282
ORF1ab/nsp216Y16YtaCtaT7474P.10.001166
ORF1ab/nsp216Y16YtaCtaT4343B.1.5820.021099
ORF1ab/nsp216Y16YtaCtaT4141B.1.1.3760.244048
ORF1ab/nsp216Y16YtaCtaT3636B.1.20.000317
ORF1ab/nsp216Y16YtaCtaT3333B.1.5260.000776
ORF1ab/nsp216Y16YtaCtaT3030AY.430.000133
ORF1ab/nsp216Y16YtaCtaT2626B.1.6210.002301
ORF1ab/nsp216Y16YtaCtaT2424AY.250.000144
ORF1ab/nsp216Y16YtaCtaT2323B.1.1.970.676471
ORF1ab/nsp216Y16YtaCtaT2121AY.390.000519
ORF1ab/nsp216Y16YtaCtaT2121B.1.5950.00548
ORF1ab/nsp216Y16YtaCtaT1818B.1.1770.000237
ORF1ab/nsp216Y16YtaCtaT1717AY.46.60.001228
ORF1ab/nsp216Y16YtaCtaT1717B.1.10.000308
ORF1ab/nsp216Y16YtaCtaT1616B.10.000147
ORF1ab/nsp216Y16YtaCtaT1212AY.1180.000752
ORF1ab/nsp216Y16YtaCtaT1111P.1.120.005324
ORF1ab/nsp216Y16YtaCtaT99AP.10.013514
ORF1ab/nsp216Y16YtaCtaT99AY.1170.000761
ORF1ab/nsp216Y16YtaCtaT99AY.30.00009
ORF1ab/nsp216Y16YtaCtaT99B.1.1.2840.000967
ORF1ab/nsp216Y16YtaCtaT99B.1.177.120.001365
ORF1ab/nsp216Y16YtaCtaT99B.1.3510.000268
ORF1ab/nsp216Y16YtaCtaT99B.1.6090.004314
ORF1ab/nsp216Y16YtaCtaT77B.400.00255
ORF1ab/nsp216Y16YtaCtaT66AY.4.20.00013
ORF1ab/nsp216Y16YtaCtaT66B.1.36.380.009852
ORF1ab/nsp216Y16YtaCtaT66B.1.6260.034286
ORF1ab/nsp216Y16YtaCtaT66P.1.140.000287
ORF1ab/nsp216Y16YtaCtaT55AY.140.00044
ORF1ab/nsp216Y16YtaCtaT55AY.200.000194
ORF1ab/nsp216Y16YtaCtaT55AY.39.10.000198
ORF1ab/nsp216Y16YtaCtaT55AY.60.000206
ORF1ab/nsp216Y16YtaCtaT55B.1.1.330.002104
ORF1ab/nsp216Y16YtaCtaT55B.1.177.600.001092
ORF1ab/nsp216Y16YtaCtaT55B.1.4290.000118
ORF1ab/nsp216Y16YtaCtaT55B.1.4700.007022
ORF1ab/nsp216Y16YtaCtaT44AY.50.000083
ORF1ab/nsp216Y16YtaCtaT44B.1.36.10.004561
ORF1ab/nsp216Y16YtaCtaT44B.1.3950.028169
ORF1ab/nsp216Y16YtaCtaT44B.1.5650.003241
ORF1ab/nsp216Y16YtaCtaT44C.370.000464
ORF1ab/nsp216Y16YtaCtaT33AY.1020.00008
ORF1ab/nsp216Y16YtaCtaT33AY.260.000085
ORF1ab/nsp216Y16YtaCtaT33AY.290.000047
ORF1ab/nsp216Y16YtaCtaT33AY.470.000093
ORF1ab/nsp216Y16YtaCtaT33AY.610.000314
ORF1ab/nsp216Y16YtaCtaT33B.1.1600.000094
ORF1ab/nsp216Y16YtaCtaT33B.1.2430.000209
ORF1ab/nsp216Y16YtaCtaT33B.1.2650.003812
ORF1ab/nsp216Y16YtaCtaT33B.1.36.290.001552
ORF1ab/nsp216Y16YtaCtaT33B.1.36.350.007812
ORF1ab/nsp216Y16YtaCtaT33P.1.20.003468
ORF1ab/nsp216Y16YtaCtaT33P.20.00056
ORF1ab/nsp216Y16YtaCtaT22A0.000774
ORF1ab/nsp216Y16YtaCtaT22AY.1060.00067
ORF1ab/nsp216Y16YtaCtaT22AY.1200.000074
ORF1ab/nsp216Y16YtaCtaT22AY.330.000134
ORF1ab/nsp216Y16YtaCtaT22AY.4.50.000215
ORF1ab/nsp216Y16YtaCtaT22AY.46.20.001271
ORF1ab/nsp216Y16YtaCtaT22AY.540.000191
ORF1ab/nsp216Y16YtaCtaT22AY.880.001768
ORF1ab/nsp216Y16YtaCtaT22AY.9.20.000073
ORF1ab/nsp216Y16YtaCtaT22B0.000256
ORF1ab/nsp216Y16YtaCtaT22B.1.1.1760.000879
ORF1ab/nsp216Y16YtaCtaT22B.1.1.280.000622
ORF1ab/nsp216Y16YtaCtaT22B.1.177.750.002081
ORF1ab/nsp216Y16YtaCtaT22B.1.36.70.008
ORF1ab/nsp216Y16YtaCtaT22B.1.4160.002538
ORF1ab/nsp216Y16YtaCtaT22B.1.416.10.003125
ORF1ab/nsp216Y16YtaCtaT22B.1.4270.000101
ORF1ab/nsp216Y16YtaCtaT22B.1.4800.004975
ORF1ab/nsp216Y16YtaCtaT22B.1.5610.000794
ORF1ab/nsp216Y16YtaCtaT22B.1.617.10.000258
ORF1ab/nsp216Y16YtaCtaT22C.360.001821
ORF1ab/nsp216Y16YtaCtaT11A.2.50.000499
ORF1ab/nsp216Y16YtaCtaT11AD.20.000219
ORF1ab/nsp216Y16YtaCtaT11AY.100.00053
ORF1ab/nsp216Y16YtaCtaT11AY.1080.001103
ORF1ab/nsp216Y16YtaCtaT11AY.1130.000142
ORF1ab/nsp216Y16YtaCtaT11AY.1190.000035
ORF1ab/nsp216Y16YtaCtaT11AY.130.000161
ORF1ab/nsp216Y16YtaCtaT11AY.230.00007
ORF1ab/nsp216Y16YtaCtaT11AY.240.000431
ORF1ab/nsp216Y16YtaCtaT11AY.3.10.000085
ORF1ab/nsp216Y16YtaCtaT11AY.34.10.00051
ORF1ab/nsp216Y16YtaCtaT11AY.4.10.000737
ORF1ab/nsp216Y16YtaCtaT11AY.420.00004
ORF1ab/nsp216Y16YtaCtaT11AY.550.000917
ORF1ab/nsp216Y16YtaCtaT11AY.580.000907
ORF1ab/nsp216Y16YtaCtaT11AY.620.000436
ORF1ab/nsp216Y16YtaCtaT11AY.660.00107
ORF1ab/nsp216Y16YtaCtaT11AY.680.000274
ORF1ab/nsp216Y16YtaCtaT11AY.690.000187
ORF1ab/nsp216Y16YtaCtaT11AY.740.000116
ORF1ab/nsp216Y16YtaCtaT11AY.940.000443
ORF1ab/nsp216Y16YtaCtaT11AY.98.10.000048
ORF1ab/nsp216Y16YtaCtaT11AZ.30.00152
ORF1ab/nsp216Y16YtaCtaT11B.1.1.1180.010204
ORF1ab/nsp216Y16YtaCtaT11B.1.1.2140.000055
ORF1ab/nsp216Y16YtaCtaT11B.1.1.2220.000204
ORF1ab/nsp216Y16YtaCtaT11B.1.1.3060.000438
ORF1ab/nsp216Y16YtaCtaT11B.1.1.3180.000302
ORF1ab/nsp216Y16YtaCtaT11B.1.1.4860.001577
ORF1ab/nsp216Y16YtaCtaT11B.1.1420.002899
ORF1ab/nsp216Y16YtaCtaT11B.1.2100.002132
ORF1ab/nsp216Y16YtaCtaT11B.1.2180.005155
ORF1ab/nsp216Y16YtaCtaT11B.1.2210.000071
ORF1ab/nsp216Y16YtaCtaT11B.1.258.170.000104
ORF1ab/nsp216Y16YtaCtaT11B.1.2600.003344
ORF1ab/nsp216Y16YtaCtaT11B.1.3910.001127
ORF1ab/nsp216Y16YtaCtaT11B.1.4030.003268
ORF1ab/nsp216Y16YtaCtaT11B.1.4060.006061
ORF1ab/nsp216Y16YtaCtaT11B.1.4250.002994
ORF1ab/nsp216Y16YtaCtaT11B.1.4590.004082
ORF1ab/nsp216Y16YtaCtaT11B.1.466.20.000391
ORF1ab/nsp216Y16YtaCtaT11B.1.5090.000866
ORF1ab/nsp216Y16YtaCtaT11B.1.5250.000113
ORF1ab/nsp216Y16YtaCtaT11B.1.595.40.007299
ORF1ab/nsp216Y16YtaCtaT11B.1.5960.000087
ORF1ab/nsp216Y16YtaCtaT11B.1.6230.000536
ORF1ab/nsp216Y16YtaCtaT11B.230.002924
ORF1ab/nsp216Y16YtaCtaT11B.30.000831
ORF1ab/nsp216Y16YtaCtaT11B.3.10.001658
ORF1ab/nsp216Y16YtaCtaT11C.320.023256
ORF1ab/nsp216Y16YtaCtaT11C.350.000774
ORF1ab/nsp216Y16YtaCtaT11P.1.150.000232
ORF1ab/nsp216Y16YtaCtaT11Q.30.000145
ORF1ab/nsp216Y16YtaCtaT11Q.40.000455
ORF1ab/nsp216Y16YtaCtaT11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.