CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 571 | V571L | V751L | nonsyn | Gtg | Ttg | 5008 | 5002 | 0.998802 | 2516-2518 |
ORF1ab/nsp2 | 571 | V571L | V751L | nonsyn | Gtg | Ctg | 5008 | 4 | 0.000798722 | 2516-2518 |
ORF1ab/nsp2 | 571 | V571L | V751L | nonsyn | GtG | CtT | 5008 | 2 | 0.000399361 | 2516-2518 |
Details of the mutation V571L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 5002 | 5008 | All | 0.000957 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ctg | 4 | 5008 | All | 0.000001 |
ORF1ab/nsp2 | 571 | V571L | GtG | CtT | 2 | 5008 | All | 0 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 2439 | 2439 | B.1.561 | 0.968241 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 1856 | 1857 | AY.4 | 0.002889 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ctg | 1 | 1857 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 148 | 148 | B.1.617.2 | 0.000557 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 145 | 145 | B.1.1.7 | 0.00013 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 94 | 94 | B.1 | 0.000861 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 47 | 47 | B.1.177.86 | 0.008622 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 30 | 30 | AY.75 | 0.001681 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 22 | 22 | AY.102 | 0.000583 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 16 | 16 | B.1.2 | 0.000141 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 13 | 13 | B.1.1.222 | 0.002652 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 10 | 10 | AY.120 | 0.000372 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 9 | 9 | B.1.36 | 0.001313 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 8 | 8 | AY.103 | 0.00005 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 8 | 8 | AY.43 | 0.000035 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 7 | 8 | B.1.1 | 0.000127 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ctg | 1 | 8 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 8 | 8 | B.1.160 | 0.00025 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 7 | 7 | AY.42 | 0.000282 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 6 | 6 | AY.119 | 0.000212 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 6 | 6 | AY.41 | 0.001764 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 6 | 6 | B.1.1.416 | 0.00543 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 6 | 6 | B.1.575 | 0.00182 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 5 | 5 | B.1.281 | 0.108696 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 5 | 5 | B.1.582 | 0.002453 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 5 | 5 | B.1.618 | 0.020161 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 4 | 4 | AY.46 | 0.000416 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 4 | 4 | B.1.1.27 | 0.022599 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 4 | 4 | B.1.36.10 | 0.019139 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 2 | 3 | AY.25 | 0.000012 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ctg | 1 | 3 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 3 | 3 | AY.91 | 0.002191 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 3 | 3 | B.1.497 | 0.000944 |
ORF1ab/nsp2 | 571 | V571L | GtG | CtT | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 2 | 2 | B.1.139 | 0.001466 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 2 | 2 | B.1.232 | 0.001075 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 2 | 2 | B.1.36.38 | 0.003284 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 2 | 2 | B.1.555 | 0.044444 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 2 | 2 | B.1.571 | 0.019417 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 1 | 1 | A.6 | 0.005128 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ctg | 1 | 1 | B.1.1.459 | 0.015385 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 1 | 1 | B.1.177.20 | 0.001517 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 1 | 1 | B.1.247 | 0.014925 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 1 | 1 | B.1.36.39 | 0.002217 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 1 | 1 | B.1.429.1 | 0.012048 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 1 | 1 | B.1.460 | 0.017857 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 1 | 1 | B.1.610 | 0.003546 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp2 | 571 | V571L | Gtg | Ttg | 1 | 1 | Q.3 | 0.000145 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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