CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 381 | V381A | V561A | nonsyn | gTt | gCt | 12948 | 12940 | 0.999382 | 1946-1948 |
ORF1ab/nsp2 | 381 | V381A | V561A | nonsyn | gTT | gCA | 12948 | 4 | 0.000308928 | 1946-1948 |
ORF1ab/nsp2 | 381 | V381A | V561A | nonsyn | gTT | gCG | 12948 | 3 | 0.000231696 | 1946-1948 |
ORF1ab/nsp2 | 381 | V381A | V561A | nonsyn | gTT | gCC | 12948 | 1 | 0.000077232 | 1946-1948 |
Details of the mutation V381A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 12940 | 12948 | All | 0.002475 |
ORF1ab/nsp2 | 381 | V381A | gTT | gCA | 4 | 12948 | All | 0.000001 |
ORF1ab/nsp2 | 381 | V381A | gTT | gCG | 3 | 12948 | All | 0.000001 |
ORF1ab/nsp2 | 381 | V381A | gTT | gCC | 1 | 12948 | All | 0 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 3739 | 3739 | B.1.36 | 0.545521 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 2355 | 2355 | B.1.36.18 | 0.989496 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1967 | 1967 | B.1.36.17 | 0.971838 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1654 | 1654 | B.1.36.36 | 0.995786 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 794 | 794 | B.1.36.27 | 0.606107 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 603 | 603 | B.1.36.38 | 0.990148 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 428 | 428 | B.1.36.39 | 0.949002 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 359 | 359 | B.1.36.37 | 0.997222 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 305 | 310 | B.1 | 0.002794 |
ORF1ab/nsp2 | 381 | V381A | gTT | gCA | 3 | 310 | B.1 | 0.000027 |
ORF1ab/nsp2 | 381 | V381A | gTT | gCC | 1 | 310 | B.1 | 0.000009 |
ORF1ab/nsp2 | 381 | V381A | gTT | gCG | 1 | 310 | B.1 | 0.000009 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 173 | 173 | B.1.36.28 | 0.994253 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 90 | 90 | B.1.36.2 | 0.967742 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 86 | 86 | B.1.36.22 | 0.103865 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 47 | 47 | B.1.36.8 | 0.047 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 47 | 47 | B.1.456 | 0.153595 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 25 | 25 | B.1.36.10 | 0.119617 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 23 | 23 | B.1.1 | 0.000417 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 16 | 16 | B.1.260 | 0.053512 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 14 | 14 | B.1.425 | 0.041916 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 14 | 14 | B.1.462 | 0.101449 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 13 | 13 | B.1.36.16 | 0.018519 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 12 | 12 | B.1.1.39 | 0.006116 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 10 | 10 | B.1.617.2 | 0.000038 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 9 | 9 | B | 0.00115 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 8 | 9 | B.1.1.7 | 0.000007 |
ORF1ab/nsp2 | 381 | V381A | gTT | gCG | 1 | 9 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 7 | 9 | B.1.177 | 0.000092 |
ORF1ab/nsp2 | 381 | V381A | gTT | gCG | 1 | 9 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 381 | V381A | gTT | gCA | 1 | 9 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 7 | 7 | B.1.1.526 | 0.024823 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 7 | 7 | B.1.36.31 | 0.012259 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 6 | 6 | AY.3 | 0.00006 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 6 | 6 | B.1.36.24 | 0.037037 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 6 | 6 | B.1.468 | 0.034286 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 5 | 5 | B.1.351 | 0.000149 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 5 | 5 | B.1.36.35 | 0.013021 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 4 | 4 | AY.42 | 0.000161 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 4 | 4 | AY.8 | 0.002424 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 4 | 4 | B.1.459 | 0.016327 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 3 | 3 | B.1.533 | 0.028846 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 2 | 2 | B.1.36.19 | 0.018519 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 2 | 2 | B.1.36.7 | 0.008 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 2 | 2 | B.1.453 | 0.006472 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 2 | 2 | B.1.470 | 0.002809 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 2 | 2 | B.1.474 | 0.003802 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 2 | 2 | B.1.480 | 0.004975 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | AU.2 | 0.002421 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | B.1.1.349 | 0.010309 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | B.1.118 | 0.006711 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | B.1.164 | 0.014925 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | B.1.36.33 | 0.007576 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | B.1.36.34 | 0.021277 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | B.1.36.9 | 0.003215 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | B.1.442 | 0.035714 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | B.1.463 | 0.008065 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | B.1.465 | 0.003802 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | B.1.629 | 0.013333 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | B.4.1 | 0.018868 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 381 | V381A | gTt | gCt | 1 | 1 | P.1.14 | 0.000048 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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