CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = T85I

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp2	85	T85I	T265I	nonsyn	aCc	aTc	400050	399347	0.998243	1058-1060
ORF1ab/nsp2	85	T85I	T265I	nonsyn	aCC	aTT	400050	702	0.00175478	1058-1060
ORF1ab/nsp2	85	T85I	T265I	nonsyn	aCC	aTA	400050	1	0.00000249969	1058-1060

Details of the mutation T85I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp2	85	T85I	aCc	aTc	399347	400050	All	0.07638
ORF1ab/nsp2	85	T85I	aCC	aTT	702	400050	All	0.000134
ORF1ab/nsp2	85	T85I	aCC	aTA	1	400050	All	0
ORF1ab/nsp2	85	T85I	aCc	aTc	112414	112660	B.1.2	0.989847
ORF1ab/nsp2	85	T85I	aCC	aTT	246	112660	B.1.2	0.002166
ORF1ab/nsp2	85	T85I	aCc	aTc	42263	42360	B.1.526	0.993372
ORF1ab/nsp2	85	T85I	aCC	aTT	97	42360	B.1.526	0.00228
ORF1ab/nsp2	85	T85I	aCc	aTc	42267	42316	B.1.429	0.994494
ORF1ab/nsp2	85	T85I	aCC	aTT	49	42316	B.1.429	0.001153
ORF1ab/nsp2	85	T85I	aCc	aTc	40840	40922	B.1	0.374075
ORF1ab/nsp2	85	T85I	aCC	aTT	81	40922	B.1	0.000742
ORF1ab/nsp2	85	T85I	aCC	aTA	1	40922	B.1	0.000009
ORF1ab/nsp2	85	T85I	aCc	aTc	33039	33085	B.1.351	0.982134
ORF1ab/nsp2	85	T85I	aCC	aTT	46	33085	B.1.351	0.001367
ORF1ab/nsp2	85	T85I	aCc	aTc	19748	19753	B.1.427	0.997223
ORF1ab/nsp2	85	T85I	aCC	aTT	5	19753	B.1.427	0.000252
ORF1ab/nsp2	85	T85I	aCc	aTc	13645	13653	B.1.637	0.997077
ORF1ab/nsp2	85	T85I	aCC	aTT	8	13653	B.1.637	0.000585
ORF1ab/nsp2	85	T85I	aCc	aTc	10858	10864	B.1.596	0.946148
ORF1ab/nsp2	85	T85I	aCC	aTT	6	10864	B.1.596	0.000523
ORF1ab/nsp2	85	T85I	aCc	aTc	3776	3777	B.1.595	0.985386
ORF1ab/nsp2	85	T85I	aCC	aTT	1	3777	B.1.595	0.000261
ORF1ab/nsp2	85	T85I	aCc	aTc	3586	3590	B.1.311	0.984624
ORF1ab/nsp2	85	T85I	aCC	aTT	4	3590	B.1.311	0.001098
ORF1ab/nsp2	85	T85I	aCc	aTc	3477	3477	B.1.369	0.991728
ORF1ab/nsp2	85	T85I	aCc	aTc	3297	3298	B.1.351.2	0.997579
ORF1ab/nsp2	85	T85I	aCC	aTT	1	3298	B.1.351.2	0.000303
ORF1ab/nsp2	85	T85I	aCc	aTc	3287	3295	B.1.575	0.997269
ORF1ab/nsp2	85	T85I	aCC	aTT	8	3295	B.1.575	0.002427
ORF1ab/nsp2	85	T85I	aCc	aTc	3165	3167	B.1.497	0.996223
ORF1ab/nsp2	85	T85I	aCC	aTT	2	3167	B.1.497	0.00063
ORF1ab/nsp2	85	T85I	aCc	aTc	2346	2346	B.1.1.7	0.0021
ORF1ab/nsp2	85	T85I	aCc	aTc	2327	2328	B.1.517	0.993595
ORF1ab/nsp2	85	T85I	aCC	aTT	1	2328	B.1.517	0.000427
ORF1ab/nsp2	85	T85I	aCc	aTc	2319	2319	B.1.564	0.987649
ORF1ab/nsp2	85	T85I	aCc	aTc	1999	2000	B.1.582	0.980864
ORF1ab/nsp2	85	T85I	aCC	aTT	1	2000	B.1.582	0.000491
ORF1ab/nsp2	85	T85I	aCc	aTc	1775	1777	B.1.623	0.952253
ORF1ab/nsp2	85	T85I	aCC	aTT	2	1777	B.1.623	0.001073
ORF1ab/nsp2	85	T85I	aCc	aTc	1632	1651	B.1.351.5	0.978417
ORF1ab/nsp2	85	T85I	aCC	aTT	19	1651	B.1.351.5	0.011391
ORF1ab/nsp2	85	T85I	aCc	aTc	1646	1646	B.1.329	1
ORF1ab/nsp2	85	T85I	aCc	aTc	1441	1443	B.1.577	0.990378
ORF1ab/nsp2	85	T85I	aCC	aTT	2	1443	B.1.577	0.001375
ORF1ab/nsp2	85	T85I	aCc	aTc	1369	1369	B.1.349	0.978556
ORF1ab/nsp2	85	T85I	aCc	aTc	1231	1231	B.1.422	1
ORF1ab/nsp2	85	T85I	aCc	aTc	1224	1228	B.1.367	0.969889
ORF1ab/nsp2	85	T85I	aCC	aTT	4	1228	B.1.367	0.00317
ORF1ab/nsp2	85	T85I	aCc	aTc	1137	1137	B.1.351.3	0.996494
ORF1ab/nsp2	85	T85I	aCc	aTc	1128	1129	B.1.509	0.976623
ORF1ab/nsp2	85	T85I	aCC	aTT	1	1129	B.1.509	0.000866
ORF1ab/nsp2	85	T85I	aCc	aTc	1102	1102	B.1.1	0.019991
ORF1ab/nsp2	85	T85I	aCc	aTc	1097	1097	B.1.588	0.99818
ORF1ab/nsp2	85	T85I	aCc	aTc	990	990	B.1.375	0.811475
ORF1ab/nsp2	85	T85I	aCc	aTc	987	988	B.1.426	0.995964
ORF1ab/nsp2	85	T85I	aCC	aTT	1	988	B.1.426	0.001009
ORF1ab/nsp2	85	T85I	aCc	aTc	970	971	AY.118	0.060769
ORF1ab/nsp2	85	T85I	aCC	aTT	1	971	AY.118	0.000063
ORF1ab/nsp2	85	T85I	aCc	aTc	960	961	B.1.428	0.979592
ORF1ab/nsp2	85	T85I	aCC	aTT	1	961	B.1.428	0.00102
ORF1ab/nsp2	85	T85I	aCc	aTc	942	943	B.1.499	0.989496
ORF1ab/nsp2	85	T85I	aCC	aTT	1	943	B.1.499	0.00105
ORF1ab/nsp2	85	T85I	aCc	aTc	898	898	B.1.568	0.997778
ORF1ab/nsp2	85	T85I	aCc	aTc	881	881	B.1.371	0.988777
ORF1ab/nsp2	85	T85I	aCc	aTc	859	859	B.1.576	0.778785
ORF1ab/nsp2	85	T85I	aCc	aTc	801	802	B.1.320	0.997509
ORF1ab/nsp2	85	T85I	aCC	aTT	1	802	B.1.320	0.001245
ORF1ab/nsp2	85	T85I	aCc	aTc	774	774	B.1.361	0.997423
ORF1ab/nsp2	85	T85I	aCc	aTc	773	773	B.1.265	0.982211
ORF1ab/nsp2	85	T85I	aCc	aTc	761	761	B.1.346	0.997379
ORF1ab/nsp2	85	T85I	aCc	aTc	709	709	AY.43	0.003141
ORF1ab/nsp2	85	T85I	aCc	aTc	630	636	B.1.362	0.970724
ORF1ab/nsp2	85	T85I	aCC	aTT	6	636	B.1.362	0.009245
ORF1ab/nsp2	85	T85I	aCc	aTc	634	634	B.1.564.1	1
ORF1ab/nsp2	85	T85I	aCc	aTc	614	614	B.1.324	0.985554
ORF1ab/nsp2	85	T85I	aCc	aTc	569	570	B.1.356	0.982729
ORF1ab/nsp2	85	T85I	aCC	aTT	1	570	B.1.356	0.001727
ORF1ab/nsp2	85	T85I	aCc	aTc	520	520	B.1.587	0.986717
ORF1ab/nsp2	85	T85I	aCc	aTc	470	505	B.1.516	0.919765
ORF1ab/nsp2	85	T85I	aCC	aTT	35	505	B.1.516	0.068493
ORF1ab/nsp2	85	T85I	aCc	aTc	467	467	B.1.298	0.987315
ORF1ab/nsp2	85	T85I	aCc	aTc	462	463	B.1.305	0.993548
ORF1ab/nsp2	85	T85I	aCC	aTT	1	463	B.1.305	0.002151
ORF1ab/nsp2	85	T85I	aCc	aTc	463	463	B.1.574	0.995699
ORF1ab/nsp2	85	T85I	aCc	aTc	409	409	B.1.575.1	0.997561
ORF1ab/nsp2	85	T85I	aCc	aTc	396	396	B.1.503	0.985075
ORF1ab/nsp2	85	T85I	aCc	aTc	386	386	B.1.336	0.941463
ORF1ab/nsp2	85	T85I	aCc	aTc	381	381	B.1.3	0.997382
ORF1ab/nsp2	85	T85I	aCc	aTc	380	380	B.1.448	0.997375
ORF1ab/nsp2	85	T85I	aCc	aTc	376	376	B.1.289	1
ORF1ab/nsp2	85	T85I	aCc	aTc	370	370	B.1.612	0.981432
ORF1ab/nsp2	85	T85I	aCc	aTc	340	340	B.1.570	1
ORF1ab/nsp2	85	T85I	aCc	aTc	339	339	B.1.350	0.994135
ORF1ab/nsp2	85	T85I	aCc	aTc	322	322	B.1.319	0.981707
ORF1ab/nsp2	85	T85I	aCc	aTc	313	313	B.1.425	0.937126
ORF1ab/nsp2	85	T85I	aCc	aTc	306	306	B.1.453	0.990291
ORF1ab/nsp2	85	T85I	aCc	aTc	301	301	B.1.433	0.961661
ORF1ab/nsp2	85	T85I	aCc	aTc	295	295	B.1.567	0.983333
ORF1ab/nsp2	85	T85I	aCc	aTc	278	278	B.1.332	0.972028
ORF1ab/nsp2	85	T85I	aCc	aTc	264	264	B.1.599	0.963504
ORF1ab/nsp2	85	T85I	aCc	aTc	247	247	B.1.39	0.964844
ORF1ab/nsp2	85	T85I	aCc	aTc	232	232	B.1.413	0.987234
ORF1ab/nsp2	85	T85I	aCc	aTc	230	230	B.1.340	0.987124
ORF1ab/nsp2	85	T85I	aCc	aTc	226	226	P.1	0.00356
ORF1ab/nsp2	85	T85I	aCc	aTc	223	223	B.1.505	0.97807
ORF1ab/nsp2	85	T85I	aCc	aTc	219	219	AY.4	0.000341
ORF1ab/nsp2	85	T85I	aCc	aTc	218	218	B.1.541	0.964602
ORF1ab/nsp2	85	T85I	aCc	aTc	216	217	AY.3	0.002148
ORF1ab/nsp2	85	T85I	aCC	aTT	1	217	AY.3	0.00001
ORF1ab/nsp2	85	T85I	aCc	aTc	209	212	B.1.362.2	0.985849
ORF1ab/nsp2	85	T85I	aCC	aTT	3	212	B.1.362.2	0.014151
ORF1ab/nsp2	85	T85I	aCc	aTc	211	211	B.1.597	0.976852
ORF1ab/nsp2	85	T85I	aCc	aTc	208	208	B.1.575.2	1
ORF1ab/nsp2	85	T85I	aCc	aTc	206	206	B.1.590	0.936364
ORF1ab/nsp2	85	T85I	aCc	aTc	200	200	B.1.366	0.97561
ORF1ab/nsp2	85	T85I	aCc	aTc	198	198	B.1.521	0.985075
ORF1ab/nsp2	85	T85I	aCc	aTc	190	190	B.1.517.1	1
ORF1ab/nsp2	85	T85I	aCc	aTc	189	189	B.1.630	0.989529
ORF1ab/nsp2	85	T85I	aCc	aTc	176	176	B.1.337	0.98324
ORF1ab/nsp2	85	T85I	aCc	aTc	175	175	B.1.626	1
ORF1ab/nsp2	85	T85I	aCc	aTc	174	174	B.1.306	0.994286
ORF1ab/nsp2	85	T85I	aCc	aTc	171	171	B.1.108	0.994186
ORF1ab/nsp2	85	T85I	aCc	aTc	170	170	B.1.595.1	0.994152
ORF1ab/nsp2	85	T85I	aCc	aTc	168	168	B.1.605	1
ORF1ab/nsp2	85	T85I	aCc	aTc	164	164	B.1.301	0.970414
ORF1ab/nsp2	85	T85I	aCc	aTc	164	164	B.1.315	0.993939
ORF1ab/nsp2	85	T85I	aCc	aTc	163	163	B.1.573	0.993902
ORF1ab/nsp2	85	T85I	aCc	aTc	161	161	B.1.606	0.96988
ORF1ab/nsp2	85	T85I	aCc	aTc	160	160	B.1.580	0.650407
ORF1ab/nsp2	85	T85I	aCc	aTc	152	152	B.1.177.73	0.08607
ORF1ab/nsp2	85	T85I	aCc	aTc	152	152	B.1.313	1
ORF1ab/nsp2	85	T85I	aCc	aTc	148	148	AY.25	0.00089
ORF1ab/nsp2	85	T85I	aCc	aTc	145	145	B.1.325	1
ORF1ab/nsp2	85	T85I	aCc	aTc	141	141	B.1.258	0.009383
ORF1ab/nsp2	85	T85I	aCc	aTc	141	141	B.1.617.2	0.000531
ORF1ab/nsp2	85	T85I	aCc	aTc	140	140	B.1.492	0.985915
ORF1ab/nsp2	85	T85I	aCc	aTc	139	139	B.1.411	0.514815
ORF1ab/nsp2	85	T85I	aCc	aTc	136	137	B.1.595.4	0.992701
ORF1ab/nsp2	85	T85I	aCC	aTT	1	137	B.1.595.4	0.007299
ORF1ab/nsp2	85	T85I	aCc	aTc	136	136	B.1.177	0.001791
ORF1ab/nsp2	85	T85I	aCc	aTc	135	135	B.1.501	0.992647
ORF1ab/nsp2	85	T85I	aCc	aTc	133	133	B.1.314	1
ORF1ab/nsp2	85	T85I	aCc	aTc	131	131	B.1.589	0.992424
ORF1ab/nsp2	85	T85I	aCc	aTc	131	131	B.1.632	0.879195
ORF1ab/nsp2	85	T85I	aCc	aTc	130	130	B.1.120	1
ORF1ab/nsp2	85	T85I	aCc	aTc	129	129	AY.46	0.013426
ORF1ab/nsp2	85	T85I	aCc	aTc	125	125	B.1.12	1
ORF1ab/nsp2	85	T85I	aCc	aTc	124	124	B.1.167	0.96875
ORF1ab/nsp2	85	T85I	aCc	aTc	123	123	B.1.370	0.984
ORF1ab/nsp2	85	T85I	aCc	aTc	122	122	B.1.344	1
ORF1ab/nsp2	85	T85I	aCc	aTc	122	122	B.1.451	1
ORF1ab/nsp2	85	T85I	aCc	aTc	121	121	B.1.424	0.975806
ORF1ab/nsp2	85	T85I	aCc	aTc	120	120	B.1.44	1
ORF1ab/nsp2	85	T85I	aCc	aTc	118	118	B.1.166	1
ORF1ab/nsp2	85	T85I	aCc	aTc	116	116	B.1.338	1
ORF1ab/nsp2	85	T85I	aCc	aTc	114	114	AY.42	0.004586
ORF1ab/nsp2	85	T85I	aCc	aTc	112	112	B.1.118	0.751678
ORF1ab/nsp2	85	T85I	aCc	aTc	110	110	B.1.495	1
ORF1ab/nsp2	85	T85I	aCc	aTc	108	109	B.1.234	0.01425
ORF1ab/nsp2	85	T85I	aCC	aTT	1	109	B.1.234	0.000132
ORF1ab/nsp2	85	T85I	aCc	aTc	103	107	B.1.596.1	0.962617
ORF1ab/nsp2	85	T85I	aCC	aTT	4	107	B.1.596.1	0.037383
ORF1ab/nsp2	85	T85I	aCc	aTc	105	105	B.1.357	1
ORF1ab/nsp2	85	T85I	aCc	aTc	104	104	B.1.581	0.981132
ORF1ab/nsp2	85	T85I	aCc	aTc	100	101	B.1.571	0.970874
ORF1ab/nsp2	85	T85I	aCC	aTT	1	101	B.1.571	0.009709
ORF1ab/nsp2	85	T85I	aCc	aTc	97	97	AY.7.2	0.054251
ORF1ab/nsp2	85	T85I	aCc	aTc	97	97	B.1.423	0.989796
ORF1ab/nsp2	85	T85I	aCc	aTc	94	94	B.1.119	0.989474
ORF1ab/nsp2	85	T85I	aCc	aTc	94	94	B.1.268	0.979167
ORF1ab/nsp2	85	T85I	aCc	aTc	94	94	B.1.591	1
ORF1ab/nsp2	85	T85I	aCc	aTc	94	94	B.1.603	1
ORF1ab/nsp2	85	T85I	aCc	aTc	91	91	B.1.160	0.002838
ORF1ab/nsp2	85	T85I	aCc	aTc	91	91	B.1.586	1
ORF1ab/nsp2	85	T85I	aCc	aTc	90	90	B.1.333	0.947368
ORF1ab/nsp2	85	T85I	aCc	aTc	90	90	B.1.372	0.989011
ORF1ab/nsp2	85	T85I	aCc	aTc	89	89	AY.98.1	0.00431
ORF1ab/nsp2	85	T85I	aCc	aTc	89	89	B.1.335	0.917526
ORF1ab/nsp2	85	T85I	aCc	aTc	88	88	B.1.435	1
ORF1ab/nsp2	85	T85I	aCc	aTc	88	88	B.1.593	0.956522
ORF1ab/nsp2	85	T85I	aCc	aTc	87	87	B.1.507	0.977528
ORF1ab/nsp2	85	T85I	aCc	aTc	86	86	B	0.010992
ORF1ab/nsp2	85	T85I	aCc	aTc	85	85	B.1.116	0.988372
ORF1ab/nsp2	85	T85I	aCc	aTc	85	85	B.1.355	0.944444
ORF1ab/nsp2	85	T85I	aCc	aTc	84	84	B.1.518	0.988235
ORF1ab/nsp2	85	T85I	aCc	aTc	83	83	B.1.429.1	1
ORF1ab/nsp2	85	T85I	aCc	aTc	83	83	P.1.14	0.003967
ORF1ab/nsp2	85	T85I	aCc	aTc	82	82	B.1.579	0.921348
ORF1ab/nsp2	85	T85I	aCc	aTc	80	80	B.1.117	1
ORF1ab/nsp2	85	T85I	aCc	aTc	80	80	B.1.450	0.909091
ORF1ab/nsp2	85	T85I	aCc	aTc	79	79	B.1.360	1
ORF1ab/nsp2	85	T85I	aCc	aTc	79	79	B.1.445	0.929412
ORF1ab/nsp2	85	T85I	aCc	aTc	78	78	B.1.293	0.975
ORF1ab/nsp2	85	T85I	aCc	aTc	77	77	B.1.1.335	1
ORF1ab/nsp2	85	T85I	aCc	aTc	77	77	B.1.432	0.865169
ORF1ab/nsp2	85	T85I	aCc	aTc	76	76	B.1.428.3	0.974359
ORF1ab/nsp2	85	T85I	aCc	aTc	75	75	B.1.363	0.974026
ORF1ab/nsp2	85	T85I	aCc	aTc	74	74	AY.4.5	0.007954
ORF1ab/nsp2	85	T85I	aCc	aTc	74	74	B.1.264	0.91358
ORF1ab/nsp2	85	T85I	aCc	aTc	74	74	B.1.302	0.986667
ORF1ab/nsp2	85	T85I	aCc	aTc	73	73	B.1.326	0.55303
ORF1ab/nsp2	85	T85I	aCc	aTc	73	73	B.1.452	1
ORF1ab/nsp2	85	T85I	aCc	aTc	72	72	B.1.513	1
ORF1ab/nsp2	85	T85I	aCc	aTc	69	69	B.1.1.519	0.00274
ORF1ab/nsp2	85	T85I	aCc	aTc	68	68	B.1.284	0.894737
ORF1ab/nsp2	85	T85I	aCc	aTc	67	67	AY.103	0.000416
ORF1ab/nsp2	85	T85I	aCc	aTc	67	67	B.1.485	1
ORF1ab/nsp2	85	T85I	aCc	aTc	66	66	AY.39	0.001631
ORF1ab/nsp2	85	T85I	aCc	aTc	66	66	AY.46.1	0.067762
ORF1ab/nsp2	85	T85I	aCc	aTc	66	66	AY.61	0.006915
ORF1ab/nsp2	85	T85I	aCc	aTc	66	66	B.1.165	0.785714
ORF1ab/nsp2	85	T85I	aCc	aTc	66	66	B.1.240	0.014227
ORF1ab/nsp2	85	T85I	aCc	aTc	66	66	B.1.515	0.956522
ORF1ab/nsp2	85	T85I	aCc	aTc	66	66	B.1.569	0.956522
ORF1ab/nsp2	85	T85I	aCc	aTc	65	65	AY.5.4	0.017986
ORF1ab/nsp2	85	T85I	aCc	aTc	62	62	B.1.444	0.984127
ORF1ab/nsp2	85	T85I	aCc	aTc	59	59	B.1.1.220	0.109665
ORF1ab/nsp2	85	T85I	aCc	aTc	59	59	B.1.598	1
ORF1ab/nsp2	85	T85I	aCc	aTc	58	58	AY.34	0.005624
ORF1ab/nsp2	85	T85I	aCc	aTc	58	58	AY.44	0.000353
ORF1ab/nsp2	85	T85I	aCc	aTc	55	55	B.1.334	1
ORF1ab/nsp2	85	T85I	aCc	aTc	54	54	B.1.348	0.981818
ORF1ab/nsp2	85	T85I	aCc	aTc	54	54	B.1.562	1
ORF1ab/nsp2	85	T85I	aCc	aTc	53	53	B.1.267	0.981481
ORF1ab/nsp2	85	T85I	aCC	aTT	49	53	B.1.604	0.844828
ORF1ab/nsp2	85	T85I	aCc	aTc	4	53	B.1.604	0.068966
ORF1ab/nsp2	85	T85I	aCc	aTc	52	52	B.1.291	1
ORF1ab/nsp2	85	T85I	aCc	aTc	51	51	B.1.40	1
ORF1ab/nsp2	85	T85I	aCc	aTc	51	51	B.1.487	1
ORF1ab/nsp2	85	T85I	aCc	aTc	51	51	B.1.578	0.910714
ORF1ab/nsp2	85	T85I	aCc	aTc	51	51	B.6	0.046406
ORF1ab/nsp2	85	T85I	aCc	aTc	49	50	B.1.566	0.942308
ORF1ab/nsp2	85	T85I	aCC	aTT	1	50	B.1.566	0.019231
ORF1ab/nsp2	85	T85I	aCc	aTc	49	49	B.1.498	1
ORF1ab/nsp2	85	T85I	aCc	aTc	48	48	B.1.343	1
ORF1ab/nsp2	85	T85I	aCc	aTc	48	48	B.1.446	0.96
ORF1ab/nsp2	85	T85I	aCc	aTc	47	48	C.37	0.005455
ORF1ab/nsp2	85	T85I	aCC	aTT	1	48	C.37	0.000116
ORF1ab/nsp2	85	T85I	aCc	aTc	47	47	AY.93	0.012835
ORF1ab/nsp2	85	T85I	aCc	aTc	45	45	B.1.36	0.006566
ORF1ab/nsp2	85	T85I	aCc	aTc	45	45	B.1.437	0.9375
ORF1ab/nsp2	85	T85I	aCc	aTc	43	43	AY.71	0.020428
ORF1ab/nsp2	85	T85I	aCc	aTc	43	43	B.1.243	0.002992
ORF1ab/nsp2	85	T85I	aCc	aTc	43	43	B.1.304	1
ORF1ab/nsp2	85	T85I	aCc	aTc	43	43	B.1.341	0.977273
ORF1ab/nsp2	85	T85I	aCc	aTc	43	43	B.1.359	0.977273
ORF1ab/nsp2	85	T85I	aCc	aTc	43	43	B.1.520	0.934783
ORF1ab/nsp2	85	T85I	aCc	aTc	43	43	B.1.524	0.060478
ORF1ab/nsp2	85	T85I	aCc	aTc	41	41	B.1.616	1
ORF1ab/nsp2	85	T85I	aCc	aTc	40	40	B.1.115	0.869565
ORF1ab/nsp2	85	T85I	aCc	aTc	40	40	B.1.323	0.833333
ORF1ab/nsp2	85	T85I	aCc	aTc	40	40	B.1.572	1
ORF1ab/nsp2	85	T85I	aCc	aTc	39	39	AY.102	0.001034
ORF1ab/nsp2	85	T85I	aCc	aTc	39	39	B.1.493	1
ORF1ab/nsp2	85	T85I	aCc	aTc	39	39	B.1.508	1
ORF1ab/nsp2	85	T85I	aCc	aTc	38	38	B.1.206	0.030995
ORF1ab/nsp2	85	T85I	aCc	aTc	38	38	B.1.506	0.904762
ORF1ab/nsp2	85	T85I	aCc	aTc	38	38	B.1.595.3	1
ORF1ab/nsp2	85	T85I	aCc	aTc	37	37	B.1.168	1
ORF1ab/nsp2	85	T85I	aCc	aTc	37	37	B.1.369.1	1
ORF1ab/nsp2	85	T85I	aCc	aTc	37	37	B.1.613	1
ORF1ab/nsp2	85	T85I	aCc	aTc	36	36	AY.119	0.001271
ORF1ab/nsp2	85	T85I	aCc	aTc	35	35	AY.75.1	0.006311
ORF1ab/nsp2	85	T85I	aCc	aTc	35	35	B.1.585	0.972222
ORF1ab/nsp2	85	T85I	aCc	aTc	34	34	AY.33	0.00227
ORF1ab/nsp2	85	T85I	aCc	aTc	34	34	B.1.221	0.002415
ORF1ab/nsp2	85	T85I	aCc	aTc	34	34	B.1.554	0.14978
ORF1ab/nsp2	85	T85I	aCc	aTc	34	34	Q.8	0.005607
ORF1ab/nsp2	85	T85I	aCc	aTc	33	33	AY.29	0.000521
ORF1ab/nsp2	85	T85I	aCc	aTc	33	33	B.1.287	1
ORF1ab/nsp2	85	T85I	aCc	aTc	33	33	R.1	0.00297
ORF1ab/nsp2	85	T85I	aCc	aTc	32	32	B.1.328	1
ORF1ab/nsp2	85	T85I	aCc	aTc	32	32	B.1.330	0.914286
ORF1ab/nsp2	85	T85I	aCc	aTc	32	32	B.1.504	1
ORF1ab/nsp2	85	T85I	aCc	aTc	32	32	B.1.525	0.003621
ORF1ab/nsp2	85	T85I	aCc	aTc	32	32	B.1.601	0.969697
ORF1ab/nsp2	85	T85I	aCc	aTc	31	31	AY.116	0.00889
ORF1ab/nsp2	85	T85I	aCc	aTc	31	31	B.1.294	1
ORF1ab/nsp2	85	T85I	aCc	aTc	31	31	B.1.594	0.96875
ORF1ab/nsp2	85	T85I	aCc	aTc	30	30	B.1.38	0.967742
ORF1ab/nsp2	85	T85I	aCc	aTc	30	30	B.1.428.2	1
ORF1ab/nsp2	85	T85I	aCc	aTc	29	29	B.1.177.43	0.042836
ORF1ab/nsp2	85	T85I	aCc	aTc	29	29	B.1.177.7	0.004781
ORF1ab/nsp2	85	T85I	aCc	aTc	29	29	B.1.308	1
ORF1ab/nsp2	85	T85I	aCc	aTc	29	29	B.1.321	1
ORF1ab/nsp2	85	T85I	aCc	aTc	29	29	B.1.428.1	1
ORF1ab/nsp2	85	T85I	aCc	aTc	29	29	B.1.494	1
ORF1ab/nsp2	85	T85I	aCc	aTc	29	29	B.1.510	0.763158
ORF1ab/nsp2	85	T85I	aCc	aTc	26	26	B.1.239	0.031746
ORF1ab/nsp2	85	T85I	aCc	aTc	26	26	B.1.318	1
ORF1ab/nsp2	85	T85I	aCc	aTc	26	26	B.1.351.1	1
ORF1ab/nsp2	85	T85I	aCc	aTc	26	26	B.1.588.1	1
ORF1ab/nsp2	85	T85I	aCc	aTc	25	25	B.1.1.507	0.217391
ORF1ab/nsp2	85	T85I	aCc	aTc	25	25	B.1.431	1
ORF1ab/nsp2	85	T85I	aCc	aTc	25	25	B.1.511	0.862069
ORF1ab/nsp2	85	T85I	aCc	aTc	25	25	B.1.592	1
ORF1ab/nsp2	85	T85I	aCc	aTc	25	25	B.1.595.2	1
ORF1ab/nsp2	85	T85I	aCc	aTc	25	25	B.1.611	1
ORF1ab/nsp2	85	T85I	aCc	aTc	25	25	B.1.615	1
ORF1ab/nsp2	85	T85I	aCc	aTc	25	25	P.1.1	0.007942
ORF1ab/nsp2	85	T85I	aCc	aTc	24	24	AY.23	0.001674
ORF1ab/nsp2	85	T85I	aCc	aTc	24	24	AY.9.2	0.000882
ORF1ab/nsp2	85	T85I	aCc	aTc	22	23	A	0.008514
ORF1ab/nsp2	85	T85I	aCC	aTT	1	23	A	0.000387
ORF1ab/nsp2	85	T85I	aCc	aTc	23	23	AY.20	0.000894
ORF1ab/nsp2	85	T85I	aCc	aTc	23	23	AY.46.6	0.001661
ORF1ab/nsp2	85	T85I	aCc	aTc	23	23	AY.53	0.006613
ORF1ab/nsp2	85	T85I	aCc	aTc	23	23	B.1.1.526	0.08156
ORF1ab/nsp2	85	T85I	aCc	aTc	21	23	B.1.354	0.913043
ORF1ab/nsp2	85	T85I	aCC	aTT	2	23	B.1.354	0.086957
ORF1ab/nsp2	85	T85I	aCc	aTc	23	23	B.1.489	1
ORF1ab/nsp2	85	T85I	aCc	aTc	23	23	P.1.12	0.011133
ORF1ab/nsp2	85	T85I	aCc	aTc	21	21	B.1.1.302	0.043568
ORF1ab/nsp2	85	T85I	aCc	aTc	21	21	B.1.263	1
ORF1ab/nsp2	85	T85I	aCc	aTc	21	21	B.1.264.1	1
ORF1ab/nsp2	85	T85I	aCc	aTc	21	21	B.1.309	1
ORF1ab/nsp2	85	T85I	aCc	aTc	21	21	B.1.609	0.010067
ORF1ab/nsp2	85	T85I	aCc	aTc	20	20	B.1.310	0.952381
ORF1ab/nsp2	85	T85I	aCc	aTc	20	20	B.1.358	1
ORF1ab/nsp2	85	T85I	aCc	aTc	20	20	B.1.618	0.080645
ORF1ab/nsp2	85	T85I	aCc	aTc	20	20	B.1.636	0.134228
ORF1ab/nsp2	85	T85I	aCc	aTc	19	19	B.1.502	1
ORF1ab/nsp2	85	T85I	aCc	aTc	19	19	B.1.607	1
ORF1ab/nsp2	85	T85I	aCc	aTc	18	18	B.1.1.416	0.01629
ORF1ab/nsp2	85	T85I	aCc	aTc	18	18	B.1.157	0.053731
ORF1ab/nsp2	85	T85I	aCc	aTc	18	18	B.1.491	0.947368
ORF1ab/nsp2	85	T85I	aCc	aTc	18	18	B.1.621	0.001593
ORF1ab/nsp2	85	T85I	aCc	aTc	17	17	B.1.1.38	1
ORF1ab/nsp2	85	T85I	aCc	aTc	17	17	B.1.1.50	0.011541
ORF1ab/nsp2	85	T85I	aCc	aTc	17	17	B.1.292	1
ORF1ab/nsp2	85	T85I	aCc	aTc	17	17	B.1.434	0.894737
ORF1ab/nsp2	85	T85I	aCc	aTc	16	16	AY.9.1	0.00134
ORF1ab/nsp2	85	T85I	aCc	aTc	16	16	B.1.638	0.842105
ORF1ab/nsp2	85	T85I	aCc	aTc	15	15	AY.26	0.000425
ORF1ab/nsp2	85	T85I	aCc	aTc	15	15	B.1.1.432	0.018987
ORF1ab/nsp2	85	T85I	aCc	aTc	15	15	B.1.362.1	1
ORF1ab/nsp2	85	T85I	aCc	aTc	15	15	B.6.6	0.013333
ORF1ab/nsp2	85	T85I	aCc	aTc	14	14	B.1.500	0.736842
ORF1ab/nsp2	85	T85I	aCc	aTc	14	14	B.1.561	0.005558
ORF1ab/nsp2	85	T85I	aCc	aTc	13	13	AY.68	0.003559
ORF1ab/nsp2	85	T85I	aCc	aTc	13	13	B.1.396	0.009174
ORF1ab/nsp2	85	T85I	aCc	aTc	13	13	C.36.3	0.007374
ORF1ab/nsp2	85	T85I	aCc	aTc	12	12	AY.75	0.000672
ORF1ab/nsp2	85	T85I	aCc	aTc	12	12	B.1.400	0.005148
ORF1ab/nsp2	85	T85I	aCc	aTc	12	12	B.1.625	0.028235
ORF1ab/nsp2	85	T85I	aCc	aTc	11	11	AY.117	0.00093
ORF1ab/nsp2	85	T85I	aCc	aTc	11	11	AY.4.2	0.000239
ORF1ab/nsp2	85	T85I	aCc	aTc	11	11	AY.47	0.000342
ORF1ab/nsp2	85	T85I	aCc	aTc	11	11	AY.70	0.002294
ORF1ab/nsp2	85	T85I	aCc	aTc	11	11	AY.96	0.022822
ORF1ab/nsp2	85	T85I	aCc	aTc	11	11	B.1.1.70	0.003752
ORF1ab/nsp2	85	T85I	aCc	aTc	11	11	B.1.78	0.094017
ORF1ab/nsp2	85	T85I	aCc	aTc	10	10	A.2.5	0.00499
ORF1ab/nsp2	85	T85I	aCc	aTc	10	10	AY.100	0.00046
ORF1ab/nsp2	85	T85I	aCc	aTc	10	10	AY.62	0.004357
ORF1ab/nsp2	85	T85I	aCc	aTc	10	10	B.1.1.222	0.00204
ORF1ab/nsp2	85	T85I	aCc	aTc	10	10	B.1.1.312	0.01912
ORF1ab/nsp2	85	T85I	aCc	aTc	10	10	B.1.210	0.021322
ORF1ab/nsp2	85	T85I	aCc	aTc	10	10	B.1.490	1
ORF1ab/nsp2	85	T85I	aCc	aTc	9	9	AY.27	0.000582
ORF1ab/nsp2	85	T85I	aCc	aTc	9	9	AY.54	0.000858
ORF1ab/nsp2	85	T85I	aCc	aTc	9	9	B.1.1.389	0.054545
ORF1ab/nsp2	85	T85I	aCc	aTc	9	9	B.1.241	0.007305
ORF1ab/nsp2	85	T85I	aCc	aTc	9	9	B.1.279	0.004622
ORF1ab/nsp2	85	T85I	aCc	aTc	9	9	B.1.470	0.01264
ORF1ab/nsp2	85	T85I	aCc	aTc	9	9	B.1.486	1
ORF1ab/nsp2	85	T85I	aCc	aTc	9	9	B.1.499.1	1
ORF1ab/nsp2	85	T85I	aCc	aTc	9	9	B.1.94	0.243243
ORF1ab/nsp2	85	T85I	aCc	aTc	8	8	AY.113	0.001139
ORF1ab/nsp2	85	T85I	aCc	aTc	8	8	AY.35	0.001864
ORF1ab/nsp2	85	T85I	aCc	aTc	8	8	AY.38	0.003994
ORF1ab/nsp2	85	T85I	aCc	aTc	8	8	AY.45	0.000973
ORF1ab/nsp2	85	T85I	aCc	aTc	8	8	B.1.1.192	0.018476
ORF1ab/nsp2	85	T85I	aCc	aTc	8	8	B.1.139	0.005865
ORF1ab/nsp2	85	T85I	aCc	aTc	8	8	B.1.342	0.8
ORF1ab/nsp2	85	T85I	aCc	aTc	8	8	B.1.546	0.02963
ORF1ab/nsp2	85	T85I	aCc	aTc	8	8	B.1.565	0.006483
ORF1ab/nsp2	85	T85I	aCc	aTc	8	8	B.1.614	1
ORF1ab/nsp2	85	T85I	aCc	aTc	8	8	B.4	0.01766
ORF1ab/nsp2	85	T85I	aCc	aTc	8	8	P.1.15	0.001859
ORF1ab/nsp2	85	T85I	aCc	aTc	8	8	P.2	0.001493
ORF1ab/nsp2	85	T85I	aCc	aTc	7	7	AY.30	0.00277
ORF1ab/nsp2	85	T85I	aCc	aTc	7	7	AY.37	0.002212
ORF1ab/nsp2	85	T85I	aCc	aTc	7	7	AY.67	0.00325
ORF1ab/nsp2	85	T85I	aCc	aTc	7	7	AY.92	0.002011
ORF1ab/nsp2	85	T85I	aCc	aTc	7	7	B.1.1.1	0.002287
ORF1ab/nsp2	85	T85I	aCc	aTc	6	7	B.1.1.434	0.002091
ORF1ab/nsp2	85	T85I	aCC	aTT	1	7	B.1.1.434	0.000349
ORF1ab/nsp2	85	T85I	aCc	aTc	7	7	B.1.214.2	0.004197
ORF1ab/nsp2	85	T85I	aCc	aTc	7	7	B.1.316	0.777778
ORF1ab/nsp2	85	T85I	aCc	aTc	7	7	B.1.350.1	1
ORF1ab/nsp2	85	T85I	aCc	aTc	7	7	B.1.36.10	0.033493
ORF1ab/nsp2	85	T85I	aCc	aTc	7	7	B.1.378	0.047945
ORF1ab/nsp2	85	T85I	aCc	aTc	7	7	B.1.496	0.875
ORF1ab/nsp2	85	T85I	aCc	aTc	7	7	B.1.9.5	0.039773
ORF1ab/nsp2	85	T85I	aCc	aTc	6	6	AY.58	0.005445
ORF1ab/nsp2	85	T85I	aCc	aTc	6	6	B.1.1.269	0.008119
ORF1ab/nsp2	85	T85I	aCc	aTc	6	6	B.1.1.297	0.013423
ORF1ab/nsp2	85	T85I	aCc	aTc	6	6	B.1.1.326	0.010563
ORF1ab/nsp2	85	T85I	aCc	aTc	6	6	B.1.1.83	0.01626
ORF1ab/nsp2	85	T85I	aCc	aTc	6	6	B.1.128	0.003812
ORF1ab/nsp2	85	T85I	aCc	aTc	6	6	B.1.177.86	0.001101
ORF1ab/nsp2	85	T85I	aCc	aTc	6	6	B.1.280	0.042857
ORF1ab/nsp2	85	T85I	aCc	aTc	6	6	B.1.36.29	0.003104
ORF1ab/nsp2	85	T85I	aCc	aTc	6	6	B.1.473	0.115385
ORF1ab/nsp2	85	T85I	aCc	aTc	6	6	B.1.621.1	0.003035
ORF1ab/nsp2	85	T85I	aCc	aTc	6	6	B.4.1	0.113208
ORF1ab/nsp2	85	T85I	aCc	aTc	5	5	AY.36	0.000741
ORF1ab/nsp2	85	T85I	aCc	aTc	5	5	AY.41	0.00147
ORF1ab/nsp2	85	T85I	aCc	aTc	5	5	AY.65	0.002665
ORF1ab/nsp2	85	T85I	aCc	aTc	5	5	AY.84	0.002187
ORF1ab/nsp2	85	T85I	aCc	aTc	5	5	B.1.1.161	0.017668
ORF1ab/nsp2	85	T85I	aCc	aTc	5	5	B.1.1.176	0.002197
ORF1ab/nsp2	85	T85I	aCc	aTc	5	5	B.1.1.226	0.02907
ORF1ab/nsp2	85	T85I	aCc	aTc	5	5	B.1.1.28	0.001556
ORF1ab/nsp2	85	T85I	aCc	aTc	5	5	B.1.1.317	0.002058
ORF1ab/nsp2	85	T85I	aCc	aTc	5	5	B.1.126	0.006378
ORF1ab/nsp2	85	T85I	aCc	aTc	5	5	B.1.177.75	0.005203
ORF1ab/nsp2	85	T85I	aCc	aTc	5	5	B.1.177.82	0.002387
ORF1ab/nsp2	85	T85I	aCc	aTc	5	5	B.1.214	0.018315
ORF1ab/nsp2	85	T85I	aCc	aTc	5	5	B.1.232	0.002687
ORF1ab/nsp2	85	T85I	aCc	aTc	5	5	B.1.36.17	0.00247
ORF1ab/nsp2	85	T85I	aCc	aTc	5	5	B.1.436	0.005144
ORF1ab/nsp2	85	T85I	aCc	aTc	5	5	B.1.488	1
ORF1ab/nsp2	85	T85I	aCc	aTc	5	5	B.1.530	0.035714
ORF1ab/nsp2	85	T85I	aCc	aTc	5	5	B.1.544	0.03012
ORF1ab/nsp2	85	T85I	aCc	aTc	5	5	B.1.81	0.106383
ORF1ab/nsp2	85	T85I	aCc	aTc	5	5	B.1.88.1	0.024038
ORF1ab/nsp2	85	T85I	aCc	aTc	5	5	B.3	0.004153
ORF1ab/nsp2	85	T85I	aCc	aTc	5	5	C.30	0.008636
ORF1ab/nsp2	85	T85I	aCc	aTc	5	5	P.1.17	0.000809
ORF1ab/nsp2	85	T85I	aCc	aTc	4	4	AY.1	0.001583
ORF1ab/nsp2	85	T85I	aCc	aTc	4	4	AY.106	0.00134
ORF1ab/nsp2	85	T85I	aCc	aTc	4	4	AY.109	0.002959
ORF1ab/nsp2	85	T85I	aCc	aTc	4	4	AY.120	0.000149
ORF1ab/nsp2	85	T85I	aCc	aTc	4	4	AY.121	0.000541
ORF1ab/nsp2	85	T85I	aCc	aTc	4	4	AY.3.1	0.000341
ORF1ab/nsp2	85	T85I	aCc	aTc	4	4	AY.46.2	0.002541
ORF1ab/nsp2	85	T85I	aCc	aTc	4	4	AY.5	0.000083
ORF1ab/nsp2	85	T85I	aCc	aTc	4	4	AY.51	0.003636
ORF1ab/nsp2	85	T85I	aCc	aTc	4	4	AY.9	0.00027
ORF1ab/nsp2	85	T85I	aCc	aTc	4	4	B.1.1.210	0.022857
ORF1ab/nsp2	85	T85I	aCc	aTc	4	4	B.1.1.258	0.013029
ORF1ab/nsp2	85	T85I	aCc	aTc	4	4	B.1.1.294	0.005063
ORF1ab/nsp2	85	T85I	aCc	aTc	4	4	B.1.1.409	0.011331
ORF1ab/nsp2	85	T85I	aCc	aTc	4	4	B.1.103	0.076923
ORF1ab/nsp2	85	T85I	aCc	aTc	4	4	B.1.104	0.01476
ORF1ab/nsp2	85	T85I	aCc	aTc	4	4	B.1.110.3	0.002874
ORF1ab/nsp2	85	T85I	aCc	aTc	2	4	B.1.111	0.00235
ORF1ab/nsp2	85	T85I	aCC	aTT	2	4	B.1.111	0.00235
ORF1ab/nsp2	85	T85I	aCc	aTc	4	4	B.1.177.44	0.002076
ORF1ab/nsp2	85	T85I	aCc	aTc	4	4	B.1.181	0.078431
ORF1ab/nsp2	85	T85I	aCc	aTc	4	4	B.1.190	0.04
ORF1ab/nsp2	85	T85I	aCc	aTc	4	4	B.1.243.1	0.088889
ORF1ab/nsp2	85	T85I	aCc	aTc	4	4	B.1.281	0.086957
ORF1ab/nsp2	85	T85I	aCc	aTc	4	4	B.1.36.22	0.004831
ORF1ab/nsp2	85	T85I	aCc	aTc	4	4	B.1.36.8	0.004
ORF1ab/nsp2	85	T85I	aCc	aTc	4	4	B.1.398	0.011905
ORF1ab/nsp2	85	T85I	aCc	aTc	4	4	B.1.399	0.007737
ORF1ab/nsp2	85	T85I	aCc	aTc	4	4	B.1.527	0.014815
ORF1ab/nsp2	85	T85I	aCc	aTc	4	4	B.1.633	0.166667
ORF1ab/nsp2	85	T85I	aCc	aTc	4	4	P.1.10	0.001078
ORF1ab/nsp2	85	T85I	aCc	aTc	4	4	P.5	0.054795
ORF1ab/nsp2	85	T85I	aCc	aTc	4	4	Q.1	0.000505
ORF1ab/nsp2	85	T85I	aCc	aTc	3	3	A.2	0.001985
ORF1ab/nsp2	85	T85I	aCc	aTc	3	3	AY.14	0.000264
ORF1ab/nsp2	85	T85I	aCc	aTc	3	3	AY.24	0.001293
ORF1ab/nsp2	85	T85I	aCc	aTc	3	3	AY.32	0.001597
ORF1ab/nsp2	85	T85I	aCc	aTc	3	3	AY.46.4	0.000494
ORF1ab/nsp2	85	T85I	aCc	aTc	3	3	AY.52	0.002443
ORF1ab/nsp2	85	T85I	aCc	aTc	3	3	AY.56	0.004815
ORF1ab/nsp2	85	T85I	aCc	aTc	3	3	AY.6	0.000123
ORF1ab/nsp2	85	T85I	aCc	aTc	3	3	AY.95	0.002283
ORF1ab/nsp2	85	T85I	aCc	aTc	3	3	AY.98	0.000237
ORF1ab/nsp2	85	T85I	aCc	aTc	3	3	AY.99.2	0.000276
ORF1ab/nsp2	85	T85I	aCc	aTc	3	3	B.1.1.230	0.027523
ORF1ab/nsp2	85	T85I	aCc	aTc	3	3	B.1.1.289	0.00625
ORF1ab/nsp2	85	T85I	aCc	aTc	3	3	B.1.1.348	0.002389
ORF1ab/nsp2	85	T85I	aCc	aTc	3	3	B.1.1.370	0.037975
ORF1ab/nsp2	85	T85I	aCc	aTc	3	3	B.1.1.372	0.002066
ORF1ab/nsp2	85	T85I	aCc	aTc	3	3	B.1.1.523	0.004687
ORF1ab/nsp2	85	T85I	aCc	aTc	3	3	B.1.1.528	0.014423
ORF1ab/nsp2	85	T85I	aCc	aTc	3	3	B.1.140	0.056604
ORF1ab/nsp2	85	T85I	aCc	aTc	3	3	B.1.170	0.012931
ORF1ab/nsp2	85	T85I	aCc	aTc	3	3	B.1.177.6	0.00293
ORF1ab/nsp2	85	T85I	aCc	aTc	3	3	B.1.177.63	0.008108
ORF1ab/nsp2	85	T85I	aCc	aTc	3	3	B.1.177.8	0.002257
ORF1ab/nsp2	85	T85I	aCc	aTc	3	3	B.1.189	0.012876
ORF1ab/nsp2	85	T85I	aCc	aTc	3	3	B.1.235	0.007557
ORF1ab/nsp2	85	T85I	aCc	aTc	3	3	B.1.236	0.00616
ORF1ab/nsp2	85	T85I	aCc	aTc	3	3	B.1.36.18	0.001261
ORF1ab/nsp2	85	T85I	aCc	aTc	3	3	B.1.382	0.026786
ORF1ab/nsp2	85	T85I	aCc	aTc	3	3	B.1.390	0.031915
ORF1ab/nsp2	85	T85I	aCc	aTc	3	3	B.1.391	0.003382
ORF1ab/nsp2	85	T85I	aCc	aTc	3	3	B.1.395	0.021127
ORF1ab/nsp2	85	T85I	aCc	aTc	3	3	B.1.459	0.012245
ORF1ab/nsp2	85	T85I	aCc	aTc	3	3	B.1.551	0.003871
ORF1ab/nsp2	85	T85I	aCc	aTc	3	3	B.1.620	0.002838
ORF1ab/nsp2	85	T85I	aCc	aTc	3	3	B.1.628	0.001057
ORF1ab/nsp2	85	T85I	aCc	aTc	3	3	C.16	0.003181
ORF1ab/nsp2	85	T85I	aCc	aTc	3	3	C.37.1	0.007853
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	A.3	0.004193
ORF1ab/nsp2	85	T85I	aCC	aTT	2	2	AU.2	0.004843
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	AY.105	0.001286
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	AY.111	0.000366
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	AY.2	0.000712
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	AY.39.1	0.000079
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	AY.86	0.00166
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	AY.88	0.001768
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	AY.94	0.000885
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	B.1.1.10	0.00223
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	B.1.1.171	0.007353
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	B.1.1.207	0.002364
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	B.1.1.229	0.011494
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	B.1.1.261	0.017241
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	B.1.1.267	0.020202
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	B.1.1.306	0.000877
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	B.1.1.316	0.00185
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	B.1.1.322	0.017544
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	B.1.1.33	0.000842
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	B.1.1.337	0.007194
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	B.1.1.37	0.000386
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	B.1.1.377	0.002762
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	B.1.1.524	0.041667
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	B.1.1.98	0.037037
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	B.1.113	0.03125
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	B.1.147	0.001512
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	B.1.177.15	0.001262
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	B.1.177.21	0.000153
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	B.1.177.80	0.003824
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	B.1.179	0.007519
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	B.1.212	0.033333
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	B.1.223	0.005556
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	B.1.237	0.00995
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	B.1.36.19	0.018519
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	B.1.36.36	0.001204
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	B.1.397	0.009709
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	B.1.441	0.019231
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	B.1.443	0.009346
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	B.1.467	0.08
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	B.1.533	0.019231
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	B.1.550	0.027397
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	B.1.555	0.044444
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	B.1.558	0.009132
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	B.1.619	0.001742
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	B.1.627	0.00404
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	B.1.634	0.006849
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	B.1.70	0.04878
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	B.40	0.000729
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	P.1.13	0.001797
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	P.1.4	0.001953
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	Q.3	0.00029
ORF1ab/nsp2	85	T85I	aCc	aTc	2	2	Q.4	0.00091
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1		0.055556
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	A.1	0.000282
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	A.21	0.00277
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	A.25	0.018182
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	AD.2	0.000219
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	AY.10	0.00053
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	AY.104	0.001984
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	AY.110	0.000113
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	AY.114	0.000231
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	AY.12	0.000316
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	AY.120.2.1	0.000498
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	AY.13	0.000161
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	AY.16.1	0.00047
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	AY.19	0.00114
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	AY.4.3	0.000842
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	AY.57	0.000656
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	AY.7	0.000196
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	AY.73	0.000665
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	AY.74	0.000116
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	AY.76	0.004831
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	AY.99	0.001049
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.122	0.045455
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.123	0.017857
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.128	0.007092
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.134	0.011364
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.148	0.008772
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.169	0.018182
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.170	0.001247
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.174	0.003378
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.189	0.001513
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.198	0.001468
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.216	0.00089
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.225	0.007194
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.231	0.003096
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.251	0.007937
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.255	0.00303
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.268	0.014925
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.277	0.000759
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.291	0.000742
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.309	0.005848
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.318	0.000302
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.329	0.003846
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.334	0.016393
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.350	0.04
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.362	0.005618
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.367	0.055556
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.374	0.002375
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.39	0.00051
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.397	0.002252
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.402	0.011111
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.411	0.014706
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.421	0.030303
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.428	0.009434
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.437	0.010417
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.44	0.00241
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.448	0.002033
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.45	0.014085
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.450	0.034483
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.464	0.001473
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.480	0.025
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.486	0.001577
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.512	0.028571
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.517	0.006803
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.52	0.012195
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.521	0.005348
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.53	0.013699
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.1.89	0.006061
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.13	0.002375
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.143	0.021277
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.160.26	0.002421
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.160.32	0.004292
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.169	0.014925
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.177.12	0.000152
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.177.16	0.000664
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.177.28	0.007407
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.177.32	0.00135
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.177.33	0.001645
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.177.42	0.000894
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.177.45	0.000381
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.177.54	0.000606
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.177.60	0.000218
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.177.65	0.000665
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.177.77	0.000726
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.177.81	0.000189
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.178	0.02381
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.187	0.033333
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.194	0.04
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.211	0.025
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.214.1	0.02
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.215	0.009615
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.221.1	0.002907
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.221.3	0.000833
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.224	0.025
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.242	0.018868
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.258.14	0.00098
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.258.3	0.001675
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.260	0.003344
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.276	0.016949
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.36.16	0.001425
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.380	0.006623
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.400.1	0.015152
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.403	0.003268
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.404	0.001302
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.405	0.012346
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.409	0.000781
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.416	0.001269
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.417	0.028571
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.438.1	0.000107
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.439	0.005917
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.466.2	0.000391
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.474	0.001901
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.476	0.1
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.535	0.028571
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.537	0.02
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.543	0.01
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.560	0.00463
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.602	0.006536
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.617.1	0.000129
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.1.93	0.000934
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.3.1	0.001658
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.35	0.007812
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	B.4.5	0.011905
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	C.1	0.002392
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	C.2	0.016129
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	C.36	0.000911
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	C.38	0.008065
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	C.4	0.01
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	D.2	0.000075
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	N.4	0.004255
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	P.1.16	0.000374
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	P.1.6	0.001946
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	P.7	0.004367
ORF1ab/nsp2	85	T85I	aCc	aTc	1	1	Q.7	0.001111

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.