CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = T632T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2632T632TT812TsynacCacT308617560.5690212699-2701
ORF1ab/nsp2632T632TT812TsynacCacA308613000.4212572699-2701
ORF1ab/nsp2632T632TT812TsynacCacG3086300.009721322699-2701

Details of the mutation T632T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2632T632TacCacT17563086All0.000336
ORF1ab/nsp2632T632TacCacA13003086All0.000249
ORF1ab/nsp2632T632TacCacG303086All0.000006
ORF1ab/nsp2632T632TacCacA832834AY.460.086595
ORF1ab/nsp2632T632TacCacT2834AY.460.000208
ORF1ab/nsp2632T632TacCacT600600AY.50.01239
ORF1ab/nsp2632T632TacCacA287291AY.420.011546
ORF1ab/nsp2632T632TacCacT4291AY.420.000161
ORF1ab/nsp2632T632TacCacT187207B.1.1.70.000167
ORF1ab/nsp2632T632TacCacA19207B.1.1.70.000017
ORF1ab/nsp2632T632TacCacG1207B.1.1.70.000001
ORF1ab/nsp2632T632TacCacT124124B.1.6280.043693
ORF1ab/nsp2632T632TacCacT120121AY.98.10.005812
ORF1ab/nsp2632T632TacCacA1121AY.98.10.000048
ORF1ab/nsp2632T632TacCacT99101AY.1030.000615
ORF1ab/nsp2632T632TacCacA2101AY.1030.000012
ORF1ab/nsp2632T632TacCacT6575AY.40.000101
ORF1ab/nsp2632T632TacCacA1075AY.40.000016
ORF1ab/nsp2632T632TacCacT4353B.10.000394
ORF1ab/nsp2632T632TacCacA1053B.10.000092
ORF1ab/nsp2632T632TacCacA4448B.1.1770.000579
ORF1ab/nsp2632T632TacCacT448B.1.1770.000053
ORF1ab/nsp2632T632TacCacT4047B.1.617.20.000151
ORF1ab/nsp2632T632TacCacA747B.1.617.20.000026
ORF1ab/nsp2632T632TacCacT3636AY.250.000217
ORF1ab/nsp2632T632TacCacT3434AY.1180.00213
ORF1ab/nsp2632T632TacCacT3434B.1.1.930.871795
ORF1ab/nsp2632T632TacCacT2127AY.430.000093
ORF1ab/nsp2632T632TacCacA627AY.430.000027
ORF1ab/nsp2632T632TacCacT2727B.1.5260.000635
ORF1ab/nsp2632T632TacCacG2626AY.99.20.002396
ORF1ab/nsp2632T632TacCacT2326B.1.20.000203
ORF1ab/nsp2632T632TacCacA326B.1.20.000026
ORF1ab/nsp2632T632TacCacA2023AY.230.001395
ORF1ab/nsp2632T632TacCacT323AY.230.000209
ORF1ab/nsp2632T632TacCacT2020AY.1200.000744
ORF1ab/nsp2632T632TacCacT1617B.1.4270.000808
ORF1ab/nsp2632T632TacCacA117B.1.4270.00005
ORF1ab/nsp2632T632TacCacT1215AY.30.000119
ORF1ab/nsp2632T632TacCacA215AY.30.00002
ORF1ab/nsp2632T632TacCacG115AY.30.00001
ORF1ab/nsp2632T632TacCacT1515C.340.555556
ORF1ab/nsp2632T632TacCacT1414B.1.177.480.04375
ORF1ab/nsp2632T632TacCacA713AY.440.000043
ORF1ab/nsp2632T632TacCacT613AY.440.000037
ORF1ab/nsp2632T632TacCacT1313B.1.177.810.002461
ORF1ab/nsp2632T632TacCacT1213P.10.000189
ORF1ab/nsp2632T632TacCacA113P.10.000016
ORF1ab/nsp2632T632TacCacT1212B.1.1.5190.000477
ORF1ab/nsp2632T632TacCacT1212B.1.5950.003132
ORF1ab/nsp2632T632TacCacA99B.1.1.2980.007759
ORF1ab/nsp2632T632TacCacT99B.1.36.290.004656
ORF1ab/nsp2632T632TacCacA88AY.1060.002679
ORF1ab/nsp2632T632TacCacT88B.1.6370.000585
ORF1ab/nsp2632T632TacCacT67AY.1020.000159
ORF1ab/nsp2632T632TacCacA17AY.1020.000027
ORF1ab/nsp2632T632TacCacT66AY.680.001642
ORF1ab/nsp2632T632TacCacT55AY.240.002155
ORF1ab/nsp2632T632TacCacT55AY.5.20.012315
ORF1ab/nsp2632T632TacCacA44B.1.3460.005242
ORF1ab/nsp2632T632TacCacA34B.1.5960.000261
ORF1ab/nsp2632T632TacCacG14B.1.5960.000087
ORF1ab/nsp2632T632TacCacT33AY.1140.000693
ORF1ab/nsp2632T632TacCacT23AY.1170.000169
ORF1ab/nsp2632T632TacCacA13AY.1170.000085
ORF1ab/nsp2632T632TacCacT23AY.140.000176
ORF1ab/nsp2632T632TacCacA13AY.140.000088
ORF1ab/nsp2632T632TacCacT23AY.200.000078
ORF1ab/nsp2632T632TacCacA13AY.200.000039
ORF1ab/nsp2632T632TacCacT33AY.46.60.000217
ORF1ab/nsp2632T632TacCacT23AY.60.000082
ORF1ab/nsp2632T632TacCacA13AY.60.000041
ORF1ab/nsp2632T632TacCacA33AY.9.20.00011
ORF1ab/nsp2632T632TacCacA23B0.000256
ORF1ab/nsp2632T632TacCacT13B0.000128
ORF1ab/nsp2632T632TacCacT33B.1.10.000054
ORF1ab/nsp2632T632TacCacT33B.1.1.2140.000166
ORF1ab/nsp2632T632TacCacT33B.1.1.2220.000612
ORF1ab/nsp2632T632TacCacT23B.1.1600.000062
ORF1ab/nsp2632T632TacCacA13B.1.1600.000031
ORF1ab/nsp2632T632TacCacT33B.1.2580.0002
ORF1ab/nsp2632T632TacCacT33B.1.4290.000071
ORF1ab/nsp2632T632TacCacT33B.1.6210.000266
ORF1ab/nsp2632T632TacCacT22A.2.50.000998
ORF1ab/nsp2632T632TacCacA12AY.1000.000046
ORF1ab/nsp2632T632TacCacT12AY.1000.000046
ORF1ab/nsp2632T632TacCacT22AY.260.000057
ORF1ab/nsp2632T632TacCacT22AY.290.000032
ORF1ab/nsp2632T632TacCacT22AY.340.000194
ORF1ab/nsp2632T632TacCacT22AY.4.20.000043
ORF1ab/nsp2632T632TacCacT22AY.4.50.000215
ORF1ab/nsp2632T632TacCacT12AY.650.000533
ORF1ab/nsp2632T632TacCacA12AY.650.000533
ORF1ab/nsp2632T632TacCacA22B.1.1.1570.001826
ORF1ab/nsp2632T632TacCacT22B.1.1.2160.001781
ORF1ab/nsp2632T632TacCacT22B.1.1.4090.005666
ORF1ab/nsp2632T632TacCacT22B.1.1.4520.222222
ORF1ab/nsp2632T632TacCacT22B.1.1880.033333
ORF1ab/nsp2632T632TacCacT22B.1.4220.001625
ORF1ab/nsp2632T632TacCacT22B.1.5090.001732
ORF1ab/nsp2632T632TacCacT22P.1.20.002312
ORF1ab/nsp2632T632TacCacT22P.20.000373
ORF1ab/nsp2632T632TacCacT11A0.000387
ORF1ab/nsp2632T632TacCacT11A.50.001923
ORF1ab/nsp2632T632TacCacT11AE.10.011364
ORF1ab/nsp2632T632TacCacT11AY.1070.000466
ORF1ab/nsp2632T632TacCacT11AY.1080.001103
ORF1ab/nsp2632T632TacCacT11AY.1130.000142
ORF1ab/nsp2632T632TacCacA11AY.1190.000035
ORF1ab/nsp2632T632TacCacT11AY.1210.000135
ORF1ab/nsp2632T632TacCacA11AY.130.000161
ORF1ab/nsp2632T632TacCacT11AY.160.00038
ORF1ab/nsp2632T632TacCacT11AY.190.00114
ORF1ab/nsp2632T632TacCacA11AY.320.000532
ORF1ab/nsp2632T632TacCacT11AY.330.000067
ORF1ab/nsp2632T632TacCacT11AY.370.000316
ORF1ab/nsp2632T632TacCacT11AY.390.000025
ORF1ab/nsp2632T632TacCacT11AY.4.40.000409
ORF1ab/nsp2632T632TacCacA11AY.400.000964
ORF1ab/nsp2632T632TacCacT11AY.450.000122
ORF1ab/nsp2632T632TacCacT11AY.46.20.000635
ORF1ab/nsp2632T632TacCacT11AY.5.30.000337
ORF1ab/nsp2632T632TacCacT11AY.5.40.000277
ORF1ab/nsp2632T632TacCacT11AY.540.000095
ORF1ab/nsp2632T632TacCacT11AY.610.000105
ORF1ab/nsp2632T632TacCacT11AY.7.10.000113
ORF1ab/nsp2632T632TacCacA11AY.710.000475
ORF1ab/nsp2632T632TacCacT11AY.740.000116
ORF1ab/nsp2632T632TacCacT11AY.840.000437
ORF1ab/nsp2632T632TacCacT11AY.90.000068
ORF1ab/nsp2632T632TacCacT11AY.980.000079
ORF1ab/nsp2632T632TacCacT11B.1.1.1170.009709
ORF1ab/nsp2632T632TacCacT11B.1.1.2050.003717
ORF1ab/nsp2632T632TacCacT11B.1.1.2770.000759
ORF1ab/nsp2632T632TacCacT11B.1.1.2840.000107
ORF1ab/nsp2632T632TacCacT11B.1.1.3020.002075
ORF1ab/nsp2632T632TacCacT11B.1.1.330.000421
ORF1ab/nsp2632T632TacCacT11B.1.1.4110.014706
ORF1ab/nsp2632T632TacCacT11B.1.1.4200.001006
ORF1ab/nsp2632T632TacCacT11B.1.1.500.000679
ORF1ab/nsp2632T632TacCacT11B.1.160.280.002924
ORF1ab/nsp2632T632TacCacT11B.1.177.440.000519
ORF1ab/nsp2632T632TacCacT11B.1.177.540.000606
ORF1ab/nsp2632T632TacCacT11B.1.177.60.000977
ORF1ab/nsp2632T632TacCacA11B.1.177.600.000218
ORF1ab/nsp2632T632TacCacT11B.1.177.730.000566
ORF1ab/nsp2632T632TacCacT11B.1.177.860.000183
ORF1ab/nsp2632T632TacCacT11B.1.1890.004292
ORF1ab/nsp2632T632TacCacG11B.1.2140.003663
ORF1ab/nsp2632T632TacCacT11B.1.2350.002519
ORF1ab/nsp2632T632TacCacT11B.1.2390.001221
ORF1ab/nsp2632T632TacCacT11B.1.2430.00007
ORF1ab/nsp2632T632TacCacT11B.1.3510.00003
ORF1ab/nsp2632T632TacCacA11B.1.351.30.000876
ORF1ab/nsp2632T632TacCacT11B.1.360.000146
ORF1ab/nsp2632T632TacCacT11B.1.36.190.009259
ORF1ab/nsp2632T632TacCacA11B.1.3960.000706
ORF1ab/nsp2632T632TacCacT11B.1.5600.00463
ORF1ab/nsp2632T632TacCacT11B.60.00091
ORF1ab/nsp2632T632TacCacA11C.160.00106
ORF1ab/nsp2632T632TacCacT11C.370.000116
ORF1ab/nsp2632T632TacCacT11P.1.120.000484
ORF1ab/nsp2632T632TacCacT11P.1.160.000374
ORF1ab/nsp2632T632TacCacT11P.1.70.000319
ORF1ab/nsp2632T632TacCacT11P.1.80.004785
ORF1ab/nsp2632T632TacCacT11Z.10.00289

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.