CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = T629T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2629T629TT809TsynacAacT27041269310.9959322690-2692
ORF1ab/nsp2629T629TT809TsynacAacG27041940.00347622690-2692
ORF1ab/nsp2629T629TT809TsynacAacC27041160.0005916942690-2692

Details of the mutation T629T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2629T629TacAacT2693127041All0.005151
ORF1ab/nsp2629T629TacAacG9427041All0.000018
ORF1ab/nsp2629T629TacAacC1627041All0.000003
ORF1ab/nsp2629T629TacAacT2044020440B.1.3510.60761
ORF1ab/nsp2629T629TacAacT32453245B.1.351.20.981846
ORF1ab/nsp2629T629TacAacT16491652B.1.351.50.988609
ORF1ab/nsp2629T629TacAacC31652B.1.351.50.001799
ORF1ab/nsp2629T629TacAacT11071107B.1.351.30.970202
ORF1ab/nsp2629T629TacAacT227230B.10.002079
ORF1ab/nsp2629T629TacAacG3230B.10.000027
ORF1ab/nsp2629T629TacAacT3333B.1.1700.142241
ORF1ab/nsp2629T629TacAacT1729B.1.1.70.000015
ORF1ab/nsp2629T629TacAacG1229B.1.1.70.000011
ORF1ab/nsp2629T629TacAacT2425B.1.10.000435
ORF1ab/nsp2629T629TacAacG125B.1.10.000018
ORF1ab/nsp2629T629TacAacG2525B.1.621.10.012645
ORF1ab/nsp2629T629TacAacT2024AY.1030.000124
ORF1ab/nsp2629T629TacAacG424AY.1030.000025
ORF1ab/nsp2629T629TacAacT1415B0.001789
ORF1ab/nsp2629T629TacAacG115B0.000128
ORF1ab/nsp2629T629TacAacG1213AY.30.000119
ORF1ab/nsp2629T629TacAacT113AY.30.00001
ORF1ab/nsp2629T629TacAacT1313B.1.351.10.5
ORF1ab/nsp2629T629TacAacT1313B.1.6200.012299
ORF1ab/nsp2629T629TacAacT1212B.1.1.3750.142857
ORF1ab/nsp2629T629TacAacG710AY.40.000011
ORF1ab/nsp2629T629TacAacT310AY.40.000005
ORF1ab/nsp2629T629TacAacT1010B.1.4700.014045
ORF1ab/nsp2629T629TacAacT1010B.1.5240.014065
ORF1ab/nsp2629T629TacAacC88B.1.6210.000708
ORF1ab/nsp2629T629TacAacT77B.1.1600.000218
ORF1ab/nsp2629T629TacAacT67B.1.617.20.000023
ORF1ab/nsp2629T629TacAacG17B.1.617.20.000004
ORF1ab/nsp2629T629TacAacG66B.1.36.170.002964
ORF1ab/nsp2629T629TacAacT66B.1.5540.026432
ORF1ab/nsp2629T629TacAacC45AY.4.20.000087
ORF1ab/nsp2629T629TacAacT15AY.4.20.000022
ORF1ab/nsp2629T629TacAacT55B.1.1.3060.002192
ORF1ab/nsp2629T629TacAacT44AY.440.000024
ORF1ab/nsp2629T629TacAacT44B.1.1.5070.034783
ORF1ab/nsp2629T629TacAacT44B.1.177.730.002265
ORF1ab/nsp2629T629TacAacT44B.1.5250.000453
ORF1ab/nsp2629T629TacAacG44P.10.000063
ORF1ab/nsp2629T629TacAacT33AY.430.000013
ORF1ab/nsp2629T629TacAacT33B.1.6090.001438
ORF1ab/nsp2629T629TacAacT33B.1.6360.020134
ORF1ab/nsp2629T629TacAacT22A0.000774
ORF1ab/nsp2629T629TacAacT12AY.540.000095
ORF1ab/nsp2629T629TacAacG12AY.540.000095
ORF1ab/nsp2629T629TacAacT22B.1.1.1890.003026
ORF1ab/nsp2629T629TacAacG12B.1.1.280.000311
ORF1ab/nsp2629T629TacAacT12B.1.1.280.000311
ORF1ab/nsp2629T629TacAacG22B.1.1.5190.000079
ORF1ab/nsp2629T629TacAacT22B.1.5270.007407
ORF1ab/nsp2629T629TacAacT22P.1.120.000968
ORF1ab/nsp2629T629TacAacT22R.10.00018
ORF1ab/nsp2629T629TacAacT11AY.10.000396
ORF1ab/nsp2629T629TacAacG11AY.1020.000027
ORF1ab/nsp2629T629TacAacG11AY.1130.000142
ORF1ab/nsp2629T629TacAacG11AY.250.000006
ORF1ab/nsp2629T629TacAacT11AY.290.000016
ORF1ab/nsp2629T629TacAacT11AY.340.000097
ORF1ab/nsp2629T629TacAacT11AY.390.000025
ORF1ab/nsp2629T629TacAacT11AY.450.000122
ORF1ab/nsp2629T629TacAacT11AY.590.00053
ORF1ab/nsp2629T629TacAacG11AY.60.000041
ORF1ab/nsp2629T629TacAacT11AY.740.000116
ORF1ab/nsp2629T629TacAacG11AY.790.001211
ORF1ab/nsp2629T629TacAacT11AY.850.000427
ORF1ab/nsp2629T629TacAacG11AY.98.10.000048
ORF1ab/nsp2629T629TacAacG11B.1.1.2160.00089
ORF1ab/nsp2629T629TacAacT11B.1.1.2730.006757
ORF1ab/nsp2629T629TacAacG11B.1.1.3180.000302
ORF1ab/nsp2629T629TacAacC11B.1.1.370.000193
ORF1ab/nsp2629T629TacAacT11B.1.1.4090.002833
ORF1ab/nsp2629T629TacAacT11B.1.1.4320.001266
ORF1ab/nsp2629T629TacAacT11B.1.1.4370.010417
ORF1ab/nsp2629T629TacAacG11B.1.1.440.00241
ORF1ab/nsp2629T629TacAacT11B.1.1.990.02381
ORF1ab/nsp2629T629TacAacT11B.1.110.30.000718
ORF1ab/nsp2629T629TacAacT11B.1.1770.000013
ORF1ab/nsp2629T629TacAacG11B.1.177.480.003125
ORF1ab/nsp2629T629TacAacG11B.1.177.810.000189
ORF1ab/nsp2629T629TacAacT11B.1.177.860.000183
ORF1ab/nsp2629T629TacAacT11B.1.2180.005155
ORF1ab/nsp2629T629TacAacT11B.1.220.001318
ORF1ab/nsp2629T629TacAacG11B.1.36.180.00042
ORF1ab/nsp2629T629TacAacG11B.1.3610.001289
ORF1ab/nsp2629T629TacAacT11B.1.3670.000792
ORF1ab/nsp2629T629TacAacT11B.1.4290.000024
ORF1ab/nsp2629T629TacAacT11B.1.4410.009615
ORF1ab/nsp2629T629TacAacT11B.1.5950.000261
ORF1ab/nsp2629T629TacAacT11B.1.5960.000087
ORF1ab/nsp2629T629TacAacT11B.1.5990.00365
ORF1ab/nsp2629T629TacAacT11B.1.6000.005848
ORF1ab/nsp2629T629TacAacT11B.1.6010.030303
ORF1ab/nsp2629T629TacAacG11B.1.6270.00202
ORF1ab/nsp2629T629TacAacT11B.1.6280.000352
ORF1ab/nsp2629T629TacAacT11B.1.6370.000073
ORF1ab/nsp2629T629TacAacT11C.1.10.076923
ORF1ab/nsp2629T629TacAacT11P.1.160.000374
ORF1ab/nsp2629T629TacAacT11P.1.40.000977