CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = T629I

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2629T629IT809InonsynaCaaTa686812690-2692

Details of the mutation T629I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2629T629IaCaaTa6868All0.000013
ORF1ab/nsp2629T629IaCaaTa1111B.1.1.70.00001
ORF1ab/nsp2629T629IaCaaTa1010AY.40.000016
ORF1ab/nsp2629T629IaCaaTa44B.1.617.20.000015
ORF1ab/nsp2629T629IaCaaTa33AE.80.001467
ORF1ab/nsp2629T629IaCaaTa33AY.1030.000019
ORF1ab/nsp2629T629IaCaaTa220.111111
ORF1ab/nsp2629T629IaCaaTa22AY.230.000139
ORF1ab/nsp2629T629IaCaaTa22AY.50.000041
ORF1ab/nsp2629T629IaCaaTa22B.10.000018
ORF1ab/nsp2629T629IaCaaTa22B.1.10.000036
ORF1ab/nsp2629T629IaCaaTa22B.1.1.5190.000079
ORF1ab/nsp2629T629IaCaaTa22B.1.1770.000026
ORF1ab/nsp2629T629IaCaaTa22B.1.20.000018
ORF1ab/nsp2629T629IaCaaTa11A.270.001656
ORF1ab/nsp2629T629IaCaaTa11AY.200.000039
ORF1ab/nsp2629T629IaCaaTa11AY.260.000028
ORF1ab/nsp2629T629IaCaaTa11AY.30.00001
ORF1ab/nsp2629T629IaCaaTa11AY.39.10.00004
ORF1ab/nsp2629T629IaCaaTa11AY.430.000004
ORF1ab/nsp2629T629IaCaaTa11AY.440.000006
ORF1ab/nsp2629T629IaCaaTa11B0.000128
ORF1ab/nsp2629T629IaCaaTa11B.1.1.370.000193
ORF1ab/nsp2629T629IaCaaTa11B.1.1.390.00051
ORF1ab/nsp2629T629IaCaaTa11B.1.140.017544
ORF1ab/nsp2629T629IaCaaTa11B.1.221.10.002907
ORF1ab/nsp2629T629IaCaaTa11B.1.2430.00007
ORF1ab/nsp2629T629IaCaaTa11B.1.2580.000067
ORF1ab/nsp2629T629IaCaaTa11B.1.258.30.001675
ORF1ab/nsp2629T629IaCaaTa11B.1.2890.00266
ORF1ab/nsp2629T629IaCaaTa11B.1.4290.000024
ORF1ab/nsp2629T629IaCaaTa11B.1.6210.000089
ORF1ab/nsp2629T629IaCaaTa11B.60.00091
ORF1ab/nsp2629T629IaCaaTa11D.20.000075
ORF1ab/nsp2629T629IaCaaTa11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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