CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = T601T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2601T601TT781TsynacAacG132950.7196972606-2608
ORF1ab/nsp2601T601TT781TsynacAacC132320.2424242606-2608
ORF1ab/nsp2601T601TT781TsynacAacT13250.03787882606-2608

Details of the mutation T601T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2601T601TacAacG95132All0.000018
ORF1ab/nsp2601T601TacAacC32132All0.000006
ORF1ab/nsp2601T601TacAacT5132All0.000001
ORF1ab/nsp2601T601TacAacG3535AY.460.003643
ORF1ab/nsp2601T601TacAacC2929C.36.30.016449
ORF1ab/nsp2601T601TacAacG1617B.1.1.70.000014
ORF1ab/nsp2601T601TacAacT117B.1.1.70.000001
ORF1ab/nsp2601T601TacAacG88AY.1070.003728
ORF1ab/nsp2601T601TacAacG88B.1.617.20.00003
ORF1ab/nsp2601T601TacAacG44C.260.029412
ORF1ab/nsp2601T601TacAacG33AY.1170.000254
ORF1ab/nsp2601T601TacAacG33AY.250.000018
ORF1ab/nsp2601T601TacAacG33AY.98.10.000145
ORF1ab/nsp2601T601TacAacT220.111111
ORF1ab/nsp2601T601TacAacG22A.2.40.006734
ORF1ab/nsp2601T601TacAacG22AY.1000.000092
ORF1ab/nsp2601T601TacAacC12B.10.000009
ORF1ab/nsp2601T601TacAacG12B.10.000009
ORF1ab/nsp2601T601TacAacT11A.20.000662
ORF1ab/nsp2601T601TacAacG11AY.16.10.00047
ORF1ab/nsp2601T601TacAacG11AY.390.000025
ORF1ab/nsp2601T601TacAacC11AY.39.10.00004
ORF1ab/nsp2601T601TacAacG11AY.40.000002
ORF1ab/nsp2601T601TacAacG11AY.440.000006
ORF1ab/nsp2601T601TacAacG11AY.5.30.000337
ORF1ab/nsp2601T601TacAacG11B0.000128
ORF1ab/nsp2601T601TacAacC11B.1.10.000018
ORF1ab/nsp2601T601TacAacG11B.1.1.700.000341
ORF1ab/nsp2601T601TacAacT11B.1.351.30.000876
ORF1ab/nsp2601T601TacAacG11B.1.4970.000315
ORF1ab/nsp2601T601TacAacG11P.10.000016
ORF1ab/nsp2601T601TacAacG11Q.10.000126