CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = T601I

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2601T601IT781InonsynaCaaTa219221910.9995442606-2608
ORF1ab/nsp2601T601IT781InonsynaCAaTT219210.0004562042606-2608

Details of the mutation T601I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2601T601IaCaaTa21912192All0.000419
ORF1ab/nsp2601T601IaCAaTT12192All0
ORF1ab/nsp2601T601IaCaaTa706706B.1.3490.504646
ORF1ab/nsp2601T601IaCaaTa560560B.1.1.70.000501
ORF1ab/nsp2601T601IaCaaTa179179AY.250.001077
ORF1ab/nsp2601T601IaCaaTa153153B.1.4270.007726
ORF1ab/nsp2601T601IaCaaTa135135AY.40.00021
ORF1ab/nsp2601T601IaCaaTa4242B.10.000385
ORF1ab/nsp2601T601IaCaaTa3232AY.750.001793
ORF1ab/nsp2601T601IaCaaTa2525B.1.617.20.000094
ORF1ab/nsp2601T601IaCaaTa2525Q.70.027778
ORF1ab/nsp2601T601IaCaaTa2121AY.430.000093
ORF1ab/nsp2601T601IaCaaTa2121B.1.1770.000277
ORF1ab/nsp2601T601IaCaaTa1818B.1.2210.001279
ORF1ab/nsp2601T601IaCaaTa1717AY.1130.002421
ORF1ab/nsp2601T601IaCaaTa1414AY.440.000085
ORF1ab/nsp2601T601IaCaaTa1414B.1.1.630.005401
ORF1ab/nsp2601T601IaCaaTa1313B.1.20.000114
ORF1ab/nsp2601T601IaCaaTa1212AY.30.000119
ORF1ab/nsp2601T601IaCaaTa99AY.470.00028
ORF1ab/nsp2601T601IaCaaTa99P.10.000142
ORF1ab/nsp2601T601IaCaaTa88C.370.000929
ORF1ab/nsp2601T601IaCaaTa88Q.80.001319
ORF1ab/nsp2601T601IaCaaTa77AY.4.50.000752
ORF1ab/nsp2601T601IaCaaTa66AY.200.000233
ORF1ab/nsp2601T601IaCaaTa66AY.620.002614
ORF1ab/nsp2601T601IaCaaTa66B.400.002186
ORF1ab/nsp2601T601IaCaaTa45B.1.10.000073
ORF1ab/nsp2601T601IaCAaTT15B.1.10.000018
ORF1ab/nsp2601T601IaCaaTa55B.1.258.170.00052
ORF1ab/nsp2601T601IaCaaTa55Q.30.000725
ORF1ab/nsp2601T601IaCaaTa44AY.1020.000106
ORF1ab/nsp2601T601IaCaaTa44AY.130.000644
ORF1ab/nsp2601T601IaCaaTa44AY.4.20.000087
ORF1ab/nsp2601T601IaCaaTa44B.1.1.4640.005891
ORF1ab/nsp2601T601IaCaaTa44B.1.3750.003279
ORF1ab/nsp2601T601IaCaaTa33AY.360.000445
ORF1ab/nsp2601T601IaCaaTa33AY.450.000365
ORF1ab/nsp2601T601IaCaaTa33B.1.1.2220.000612
ORF1ab/nsp2601T601IaCaaTa33B.1.1.2970.006711
ORF1ab/nsp2601T601IaCaaTa33B.1.177.90.003995
ORF1ab/nsp2601T601IaCaaTa33B.1.4710.008197
ORF1ab/nsp2601T601IaCaaTa33C.160.003181
ORF1ab/nsp2601T601IaCaaTa33P.1.70.000958
ORF1ab/nsp2601T601IaCaaTa22AY.1030.000012
ORF1ab/nsp2601T601IaCaaTa22AY.1190.000071
ORF1ab/nsp2601T601IaCaaTa22AY.1200.000074
ORF1ab/nsp2601T601IaCaaTa22AY.260.000057
ORF1ab/nsp2601T601IaCaaTa22AY.590.001059
ORF1ab/nsp2601T601IaCaaTa22AY.610.00021
ORF1ab/nsp2601T601IaCaaTa22AY.90.000135
ORF1ab/nsp2601T601IaCaaTa22AY.970.003401
ORF1ab/nsp2601T601IaCaaTa22AY.98.10.000097
ORF1ab/nsp2601T601IaCaaTa22B.1.1.280.000622
ORF1ab/nsp2601T601IaCaaTa22B.1.1.3060.000877
ORF1ab/nsp2601T601IaCaaTa22B.1.1.4070.083333
ORF1ab/nsp2601T601IaCaaTa22B.1.1.4490.045455
ORF1ab/nsp2601T601IaCaaTa22B.1.2430.000139
ORF1ab/nsp2601T601IaCaaTa22B.1.2580.000133
ORF1ab/nsp2601T601IaCaaTa22B.1.5170.000854
ORF1ab/nsp2601T601IaCaaTa22B.1.5250.000226
ORF1ab/nsp2601T601IaCaaTa22B.1.5810.018868
ORF1ab/nsp2601T601IaCaaTa22B.1.6370.000146
ORF1ab/nsp2601T601IaCaaTa22C.110.021277
ORF1ab/nsp2601T601IaCaaTa11AY.1040.001984
ORF1ab/nsp2601T601IaCaaTa11AY.1110.000183
ORF1ab/nsp2601T601IaCaaTa11AY.1210.000135
ORF1ab/nsp2601T601IaCaaTa11AY.160.00038
ORF1ab/nsp2601T601IaCaaTa11AY.280.00189
ORF1ab/nsp2601T601IaCaaTa11AY.290.000016
ORF1ab/nsp2601T601IaCaaTa11AY.340.000097
ORF1ab/nsp2601T601IaCaaTa11AY.390.000025
ORF1ab/nsp2601T601IaCaaTa11AY.460.000104
ORF1ab/nsp2601T601IaCaaTa11AY.46.20.000635
ORF1ab/nsp2601T601IaCaaTa11AY.46.40.000165
ORF1ab/nsp2601T601IaCaaTa11AY.46.60.000072
ORF1ab/nsp2601T601IaCaaTa11AY.540.000095
ORF1ab/nsp2601T601IaCaaTa11AY.600.000938
ORF1ab/nsp2601T601IaCaaTa11AY.660.00107
ORF1ab/nsp2601T601IaCaaTa11AY.790.001211
ORF1ab/nsp2601T601IaCaaTa11B.1.1.10.000327
ORF1ab/nsp2601T601IaCaaTa11B.1.1.2160.00089
ORF1ab/nsp2601T601IaCaaTa11B.1.1.390.00051
ORF1ab/nsp2601T601IaCaaTa11B.1.1.5170.006803
ORF1ab/nsp2601T601IaCaaTa11B.1.1.5190.00004
ORF1ab/nsp2601T601IaCaaTa11B.1.1.700.000341
ORF1ab/nsp2601T601IaCaaTa11B.1.1600.000031
ORF1ab/nsp2601T601IaCaaTa11B.1.177.200.001517
ORF1ab/nsp2601T601IaCaaTa11B.1.177.320.00135
ORF1ab/nsp2601T601IaCaaTa11B.1.177.330.001645
ORF1ab/nsp2601T601IaCaaTa11B.1.177.570.000281
ORF1ab/nsp2601T601IaCaaTa11B.1.177.600.000218
ORF1ab/nsp2601T601IaCaaTa11B.1.1790.003759
ORF1ab/nsp2601T601IaCaaTa11B.1.1870.033333
ORF1ab/nsp2601T601IaCaaTa11B.1.1880.016667
ORF1ab/nsp2601T601IaCaaTa11B.1.2180.005155
ORF1ab/nsp2601T601IaCaaTa11B.1.3510.00003
ORF1ab/nsp2601T601IaCaaTa11B.1.3670.000792
ORF1ab/nsp2601T601IaCaaTa11B.1.3720.010989
ORF1ab/nsp2601T601IaCaaTa11B.1.4290.000024
ORF1ab/nsp2601T601IaCaaTa11B.1.4370.020833
ORF1ab/nsp2601T601IaCaaTa11B.1.466.20.000391
ORF1ab/nsp2601T601IaCaaTa11B.1.4970.000315
ORF1ab/nsp2601T601IaCaaTa11B.1.4990.00105
ORF1ab/nsp2601T601IaCaaTa11B.1.5960.000087
ORF1ab/nsp2601T601IaCaaTa11B.1.617.10.000129
ORF1ab/nsp2601T601IaCaaTa11B.1.6200.000946
ORF1ab/nsp2601T601IaCaaTa11B.1.6210.000089
ORF1ab/nsp2601T601IaCaaTa11B.3.10.001658
ORF1ab/nsp2601T601IaCaaTa11P.1.120.000484
ORF1ab/nsp2601T601IaCaaTa11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.