CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = T439S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2439T439ST619SnonsynActTct1170.6363642120-2122
ORF1ab/nsp2439T439ST619SnonsynaCtaGt1140.3636362120-2122

Details of the mutation T439S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2439T439SActTct711All0.000001
ORF1ab/nsp2439T439SaCtaGt411All0.000001
ORF1ab/nsp2439T439SaCtaGt22AY.40.000003
ORF1ab/nsp2439T439SActTct110.055556
ORF1ab/nsp2439T439SActTct11AD.20.000219
ORF1ab/nsp2439T439SaCtaGt11AY.1000.000046
ORF1ab/nsp2439T439SActTct11AY.400.000964
ORF1ab/nsp2439T439SActTct11AY.430.000004
ORF1ab/nsp2439T439SActTct11B0.000128
ORF1ab/nsp2439T439SActTct11B.10.000009
ORF1ab/nsp2439T439SActTct11B.1.2840.013158
ORF1ab/nsp2439T439SaCtaGt11P.1.10.000318