CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = T439I

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2439T439IT619InonsynaCtaTt4984970.9979922120-2122
ORF1ab/nsp2439T439IT619InonsynaCTaTC49810.002008032120-2122

Details of the mutation T439I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2439T439IaCtaTt497498All0.000095
ORF1ab/nsp2439T439IaCTaTC1498All0
ORF1ab/nsp2439T439IaCtaTt106106B.1.1.70.000095
ORF1ab/nsp2439T439IaCtaTt7878B.1.1.2140.004326
ORF1ab/nsp2439T439IaCtaTt3434B.1.6390.73913
ORF1ab/nsp2439T439IaCtaTt2727B.1.617.20.000102
ORF1ab/nsp2439T439IaCtaTt2626AY.40.00004
ORF1ab/nsp2439T439IaCtaTt1919AY.250.000114
ORF1ab/nsp2439T439IaCtaTt1919AY.90.001284
ORF1ab/nsp2439T439IaCtaTt1919B.1.6160.463415
ORF1ab/nsp2439T439IaCtaTt1212AY.1030.000075
ORF1ab/nsp2439T439IaCtaTt1111AY.10.004353
ORF1ab/nsp2439T439IaCtaTt1010AY.430.000044
ORF1ab/nsp2439T439IaCtaTt1010B.1.1600.000312
ORF1ab/nsp2439T439IaCtaTt99B.10.000082
ORF1ab/nsp2439T439IaCtaTt99P.10.000142
ORF1ab/nsp2439T439IaCtaTt77AY.740.00081
ORF1ab/nsp2439T439IaCtaTt77B.1.20.000062
ORF1ab/nsp2439T439IaCtaTt66B.1.36.210.012959
ORF1ab/nsp2439T439IaCtaTt44AY.30.00004
ORF1ab/nsp2439T439IaCtaTt44AY.5.30.00135
ORF1ab/nsp2439T439IaCtaTt44B.1.1770.000053
ORF1ab/nsp2439T439IaCtaTt44B.1.3490.002859
ORF1ab/nsp2439T439IaCtaTt44B.1.5260.000094
ORF1ab/nsp2439T439IaCtaTt44B.1.6040.068966
ORF1ab/nsp2439T439IaCtaTt44C.370.000464
ORF1ab/nsp2439T439IaCtaTt44Q.40.001819
ORF1ab/nsp2439T439IaCtaTt33AY.1020.00008
ORF1ab/nsp2439T439IaCtaTt33AY.290.000047
ORF1ab/nsp2439T439IaCtaTt33AY.610.000314
ORF1ab/nsp2439T439IaCtaTt33B.1.10.000054
ORF1ab/nsp2439T439IaCTaTC120.055556
ORF1ab/nsp2439T439IaCtaTt120.055556
ORF1ab/nsp2439T439IaCtaTt22AY.200.000078
ORF1ab/nsp2439T439IaCtaTt22AY.39.10.000079
ORF1ab/nsp2439T439IaCtaTt22AY.440.000012
ORF1ab/nsp2439T439IaCtaTt22B.1.1.2820.023256
ORF1ab/nsp2439T439IaCtaTt22B.1.360.000292
ORF1ab/nsp2439T439IaCtaTt22B.1.4290.000047
ORF1ab/nsp2439T439IaCtaTt11AY.1000.000046
ORF1ab/nsp2439T439IaCtaTt11AY.1170.000085
ORF1ab/nsp2439T439IaCtaTt11AY.1200.000037
ORF1ab/nsp2439T439IaCtaTt11AY.130.000161
ORF1ab/nsp2439T439IaCtaTt11AY.230.00007
ORF1ab/nsp2439T439IaCtaTt11AY.260.000028
ORF1ab/nsp2439T439IaCtaTt11AY.390.000025
ORF1ab/nsp2439T439IaCtaTt11AY.46.10.001027
ORF1ab/nsp2439T439IaCtaTt11AY.50.000021
ORF1ab/nsp2439T439IaCtaTt11AY.650.000533
ORF1ab/nsp2439T439IaCtaTt11AY.660.00107
ORF1ab/nsp2439T439IaCtaTt11AY.690.000187
ORF1ab/nsp2439T439IaCtaTt11AY.70.000196
ORF1ab/nsp2439T439IaCtaTt11AY.750.000056
ORF1ab/nsp2439T439IaCtaTt11AY.9.10.000084
ORF1ab/nsp2439T439IaCtaTt11AY.9.20.000037
ORF1ab/nsp2439T439IaCtaTt11B.1.1.2220.000204
ORF1ab/nsp2439T439IaCtaTt11B.1.1.2540.011236
ORF1ab/nsp2439T439IaCtaTt11B.1.1.3010.001179
ORF1ab/nsp2439T439IaCtaTt11B.1.1.370.000193
ORF1ab/nsp2439T439IaCtaTt11B.1.1.700.000341
ORF1ab/nsp2439T439IaCtaTt11B.1.2580.000067
ORF1ab/nsp2439T439IaCtaTt11B.1.3240.001605
ORF1ab/nsp2439T439IaCtaTt11B.1.3610.001289
ORF1ab/nsp2439T439IaCtaTt11B.1.5960.000087
ORF1ab/nsp2439T439IaCtaTt11B.1.6210.000089
ORF1ab/nsp2439T439IaCtaTt11B.1.6230.000536
ORF1ab/nsp2439T439IaCtaTt11B.350.007812
ORF1ab/nsp2439T439IaCtaTt11P.1.120.000484
ORF1ab/nsp2439T439IaCtaTt11P.1.20.001156
ORF1ab/nsp2439T439IaCtaTt11R.10.00009