CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = T439A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2439T439AT619AnonsynActGct18018012120-2122

Details of the mutation T439A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2439T439AActGct180180All0.000034
ORF1ab/nsp2439T439AActGct7878AY.250.000469
ORF1ab/nsp2439T439AActGct2121AY.290.000331
ORF1ab/nsp2439T439AActGct1616AY.430.000071
ORF1ab/nsp2439T439AActGct1111AY.440.000067
ORF1ab/nsp2439T439AActGct99B.1.1.70.000008
ORF1ab/nsp2439T439AActGct99B.1.617.20.000034
ORF1ab/nsp2439T439AActGct66AY.30.00006
ORF1ab/nsp2439T439AActGct55B.1.1600.000156
ORF1ab/nsp2439T439AActGct33AY.390.000074
ORF1ab/nsp2439T439AActGct22AY.1030.000012
ORF1ab/nsp2439T439AActGct22AY.260.000057
ORF1ab/nsp2439T439AActGct22B.1.4290.000047
ORF1ab/nsp2439T439AActGct11AY.1140.000231
ORF1ab/nsp2439T439AActGct11AY.1160.000287
ORF1ab/nsp2439T439AActGct11AY.230.00007
ORF1ab/nsp2439T439AActGct11AY.560.001605
ORF1ab/nsp2439T439AActGct11AY.70.000196
ORF1ab/nsp2439T439AActGct11AY.75.10.00018
ORF1ab/nsp2439T439AActGct11B0.000128
ORF1ab/nsp2439T439AActGct11B.10.000009
ORF1ab/nsp2439T439AActGct11B.1.1.280.000311
ORF1ab/nsp2439T439AActGct11B.1.177.120.000152
ORF1ab/nsp2439T439AActGct11B.1.20.000009
ORF1ab/nsp2439T439AActGct11B.1.258.140.00098
ORF1ab/nsp2439T439AActGct11B.1.3510.00003
ORF1ab/nsp2439T439AActGct11B.1.36.80.001
ORF1ab/nsp2439T439AActGct11B.1.3960.000706
ORF1ab/nsp2439T439AActGct11B.1.5170.000427