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CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = T332T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2332T332TT512TsynacAacG197850.4314721799-1801
ORF1ab/nsp2332T332TT512TsynacAacT197680.3451781799-1801
ORF1ab/nsp2332T332TT512TsynacAacC197440.223351799-1801

Details of the mutation T332T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2332T332TacAacG85197All0.000016
ORF1ab/nsp2332T332TacAacT68197All0.000013
ORF1ab/nsp2332T332TacAacC44197All0.000008
ORF1ab/nsp2332T332TacAacT4151B.1.617.20.000154
ORF1ab/nsp2332T332TacAacG751B.1.617.20.000026
ORF1ab/nsp2332T332TacAacC351B.1.617.20.000011
ORF1ab/nsp2332T332TacAacC3737AY.1190.001306
ORF1ab/nsp2332T332TacAacG1218B.1.1.70.000011
ORF1ab/nsp2332T332TacAacT618B.1.1.70.000005
ORF1ab/nsp2332T332TacAacG1113AY.260.000311
ORF1ab/nsp2332T332TacAacT213AY.260.000057
ORF1ab/nsp2332T332TacAacG1111AY.250.000066
ORF1ab/nsp2332T332TacAacG77B.1.1600.000218
ORF1ab/nsp2332T332TacAacG36AY.30.00003
ORF1ab/nsp2332T332TacAacC26AY.30.00002
ORF1ab/nsp2332T332TacAacT16AY.30.00001
ORF1ab/nsp2332T332TacAacG66B.1.2150.057692
ORF1ab/nsp2332T332TacAacG35AY.430.000013
ORF1ab/nsp2332T332TacAacT25AY.430.000009
ORF1ab/nsp2332T332TacAacG34AY.40.000005
ORF1ab/nsp2332T332TacAacT14AY.40.000002
ORF1ab/nsp2332T332TacAacG33AY.1020.00008
ORF1ab/nsp2332T332TacAacT23AY.1030.000012
ORF1ab/nsp2332T332TacAacG13AY.1030.000006
ORF1ab/nsp2332T332TacAacG33B.1.160.140.006356
ORF1ab/nsp2332T332TacAacG33B.1.4290.000071
ORF1ab/nsp2332T332TacAacG22AY.130.000322
ORF1ab/nsp2332T332TacAacT12B.1.20.000009
ORF1ab/nsp2332T332TacAacC12B.1.20.000009
ORF1ab/nsp2332T332TacAacT22B.1.4700.002809
ORF1ab/nsp2332T332TacAacG11AY.1130.000142
ORF1ab/nsp2332T332TacAacT11AY.1210.000135
ORF1ab/nsp2332T332TacAacT11AY.200.000039
ORF1ab/nsp2332T332TacAacG11AY.460.000104
ORF1ab/nsp2332T332TacAacG11AY.540.000095
ORF1ab/nsp2332T332TacAacG11AY.580.000907
ORF1ab/nsp2332T332TacAacT11AY.750.000056
ORF1ab/nsp2332T332TacAacC11AY.9.20.000037
ORF1ab/nsp2332T332TacAacG11B.10.000009
ORF1ab/nsp2332T332TacAacT11B.1.1.3170.000412
ORF1ab/nsp2332T332TacAacT11B.1.1.5190.00004
ORF1ab/nsp2332T332TacAacG11B.1.1.540.003021
ORF1ab/nsp2332T332TacAacT11B.1.177.570.000281
ORF1ab/nsp2332T332TacAacG11B.1.2580.000067
ORF1ab/nsp2332T332TacAacG11B.1.5250.000113
ORF1ab/nsp2332T332TacAacT11B.1.5760.000907
ORF1ab/nsp2332T332TacAacT11B.1.6060.006024
ORF1ab/nsp2332T332TacAacT11B.1.6210.000089
ORF1ab/nsp2332T332TacAacT11B.1.940.027027
ORF1ab/nsp2332T332TacAacG11C.370.000116
ORF1ab/nsp2332T332TacAacG11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.