CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = T332I

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2332T332IT512InonsynaCaaTa4294280.9976691799-1801
ORF1ab/nsp2332T332IT512InonsynaCAaTC42910.0023311799-1801

Details of the mutation T332I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2332T332IaCaaTa428429All0.000082
ORF1ab/nsp2332T332IaCAaTC1429All0
ORF1ab/nsp2332T332IaCaaTa113113B.1.1.70.000101
ORF1ab/nsp2332T332IaCaaTa6969AY.40.000107
ORF1ab/nsp2332T332IaCaaTa2323AY.1180.001441
ORF1ab/nsp2332T332IaCaaTa1515B.1.1.5190.000596
ORF1ab/nsp2332T332IaCaaTa1313B.1.4530.042071
ORF1ab/nsp2332T332IaCaaTa1212AY.670.005571
ORF1ab/nsp2332T332IaCaaTa1010AZ.40.033557
ORF1ab/nsp2332T332IaCaaTa99B.10.000082
ORF1ab/nsp2332T332IaCaaTa88AY.4.20.000174
ORF1ab/nsp2332T332IaCaaTa78AY.430.000031
ORF1ab/nsp2332T332IaCAaTC18AY.430.000004
ORF1ab/nsp2332T332IaCaaTa88B.1.1.2910.005939
ORF1ab/nsp2332T332IaCaaTa88B.1.1600.00025
ORF1ab/nsp2332T332IaCaaTa88P.10.000126
ORF1ab/nsp2332T332IaCaaTa66AY.1030.000037
ORF1ab/nsp2332T332IaCaaTa66B.1.10.000109
ORF1ab/nsp2332T332IaCaaTa66B.1.110.10.6
ORF1ab/nsp2332T332IaCaaTa66B.1.1770.000079
ORF1ab/nsp2332T332IaCaaTa66B.1.617.20.000023
ORF1ab/nsp2332T332IaCaaTa55AY.250.00003
ORF1ab/nsp2332T332IaCaaTa55AY.98.10.000242
ORF1ab/nsp2332T332IaCaaTa55B.1.4290.000118
ORF1ab/nsp2332T332IaCaaTa44AY.390.000099
ORF1ab/nsp2332T332IaCaaTa44AY.440.000024
ORF1ab/nsp2332T332IaCaaTa44AY.99.20.000369
ORF1ab/nsp2332T332IaCaaTa44B.1.4160.005076
ORF1ab/nsp2332T332IaCaaTa44B.1.4760.4
ORF1ab/nsp2332T332IaCaaTa44B.1.6370.000292
ORF1ab/nsp2332T332IaCaaTa44D.20.0003
ORF1ab/nsp2332T332IaCaaTa33AY.1190.000106
ORF1ab/nsp2332T332IaCaaTa33AY.500.002398
ORF1ab/nsp2332T332IaCaaTa33Q.10.000379
ORF1ab/nsp2332T332IaCaaTa220.111111
ORF1ab/nsp2332T332IaCaaTa22A.10.000564
ORF1ab/nsp2332T332IaCaaTa22AY.1040.003968
ORF1ab/nsp2332T332IaCaaTa22AY.30.00002
ORF1ab/nsp2332T332IaCaaTa22AY.60.000082
ORF1ab/nsp2332T332IaCaaTa22B.1.20.000018
ORF1ab/nsp2332T332IaCaaTa22B.1.4870.039216
ORF1ab/nsp2332T332IaCaaTa22Q.80.00033
ORF1ab/nsp2332T332IaCaaTa11AY.1000.000046
ORF1ab/nsp2332T332IaCaaTa11AY.1080.001103
ORF1ab/nsp2332T332IaCaaTa11AY.1200.000037
ORF1ab/nsp2332T332IaCaaTa11AY.200.000039
ORF1ab/nsp2332T332IaCaaTa11AY.230.00007
ORF1ab/nsp2332T332IaCaaTa11AY.260.000028
ORF1ab/nsp2332T332IaCaaTa11AY.290.000016
ORF1ab/nsp2332T332IaCaaTa11AY.340.000097
ORF1ab/nsp2332T332IaCaaTa11AY.39.20.001541
ORF1ab/nsp2332T332IaCaaTa11AY.4.40.000409
ORF1ab/nsp2332T332IaCaaTa11AY.420.00004
ORF1ab/nsp2332T332IaCaaTa11AY.450.000122
ORF1ab/nsp2332T332IaCaaTa11AY.46.40.000165
ORF1ab/nsp2332T332IaCaaTa11AY.470.000031
ORF1ab/nsp2332T332IaCaaTa11AY.610.000105
ORF1ab/nsp2332T332IaCaaTa11AY.920.000287
ORF1ab/nsp2332T332IaCaaTa11AY.930.000273
ORF1ab/nsp2332T332IaCaaTa11B.1.1.1010.01
ORF1ab/nsp2332T332IaCaaTa11B.1.1.2140.000055
ORF1ab/nsp2332T332IaCaaTa11B.1.1.3560.008547
ORF1ab/nsp2332T332IaCaaTa11B.1.1240.007812
ORF1ab/nsp2332T332IaCaaTa11B.1.2400.000216
ORF1ab/nsp2332T332IaCaaTa11B.1.36.160.001425
ORF1ab/nsp2332T332IaCaaTa11B.1.4700.001404
ORF1ab/nsp2332T332IaCaaTa11B.1.5260.000024
ORF1ab/nsp2332T332IaCaaTa11B.1.5960.000087
ORF1ab/nsp2332T332IaCaaTa11B.1.6210.000089

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.