CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = T332A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2332T332AT512AnonsynAcaGca1341330.9925371799-1801
ORF1ab/nsp2332T332AT512AnonsynAcAGcG13410.007462691799-1801

Details of the mutation T332A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2332T332AAcaGca133134All0.000025
ORF1ab/nsp2332T332AAcAGcG1134All0
ORF1ab/nsp2332T332AAcaGca7070B.1.1.70.000063
ORF1ab/nsp2332T332AAcaGca1212B.1.617.20.000045
ORF1ab/nsp2332T332AAcaGca1111AY.1030.000068
ORF1ab/nsp2332T332AAcaGca77B.1.177.600.001529
ORF1ab/nsp2332T332AAcaGca44AY.470.000124
ORF1ab/nsp2332T332AAcaGca22AY.30.00002
ORF1ab/nsp2332T332AAcaGca22AY.430.000009
ORF1ab/nsp2332T332AAcaGca12AY.440.000006
ORF1ab/nsp2332T332AAcAGcG12AY.440.000006
ORF1ab/nsp2332T332AAcaGca22AY.490.00639
ORF1ab/nsp2332T332AAcaGca22B.1.1600.000062
ORF1ab/nsp2332T332AAcaGca22B.1.5260.000047
ORF1ab/nsp2332T332AAcaGca22B.1.5760.001813
ORF1ab/nsp2332T332AAcaGca11A.210.00277
ORF1ab/nsp2332T332AAcaGca11AY.1020.000027
ORF1ab/nsp2332T332AAcaGca11AY.1110.000183
ORF1ab/nsp2332T332AAcaGca11AY.1180.000063
ORF1ab/nsp2332T332AAcaGca11AY.1200.000037
ORF1ab/nsp2332T332AAcaGca11AY.250.000006
ORF1ab/nsp2332T332AAcaGca11AY.360.000148
ORF1ab/nsp2332T332AAcaGca11AY.39.10.00004
ORF1ab/nsp2332T332AAcaGca11AY.40.000002
ORF1ab/nsp2332T332AAcaGca11AY.610.000105
ORF1ab/nsp2332T332AAcaGca11AY.9.20.000037
ORF1ab/nsp2332T332AAcaGca11B.10.000009
ORF1ab/nsp2332T332AAcaGca11B.1.1.330.000421
ORF1ab/nsp2332T332AAcaGca11B.1.2210.000071
ORF1ab/nsp2332T332AAcaGca11B.1.3510.00003
ORF1ab/nsp2332T332AAcaGca11B.1.36.290.000517

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.