CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = T153A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2153T153AT333AnonsynAcgGcg7637590.9947581262-1264
ORF1ab/nsp2153T153AT333AnonsynAcGGcC76320.002621231262-1264
ORF1ab/nsp2153T153AT333AnonsynAcGGcA76310.001310621262-1264
ORF1ab/nsp2153T153AT333AnonsynAcGGcT76310.001310621262-1264

Details of the mutation T153A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2153T153AAcgGcg759763All0.000145
ORF1ab/nsp2153T153AAcGGcC2763All0
ORF1ab/nsp2153T153AAcGGcT1763All0
ORF1ab/nsp2153T153AAcGGcA1763All0
ORF1ab/nsp2153T153AAcgGcg186186B.1.6300.973822
ORF1ab/nsp2153T153AAcgGcg112112B.1.617.20.000422
ORF1ab/nsp2153T153AAcgGcg7475B.1.1.70.000066
ORF1ab/nsp2153T153AAcGGcA175B.1.1.70.000001
ORF1ab/nsp2153T153AAcgGcg6969AY.430.000306
ORF1ab/nsp2153T153AAcgGcg6262AY.9.10.005191
ORF1ab/nsp2153T153AAcgGcg4242AY.40.000065
ORF1ab/nsp2153T153AAcgGcg3636AY.1020.000955
ORF1ab/nsp2153T153AAcgGcg2929B.1.1.2430.118367
ORF1ab/nsp2153T153AAcgGcg1515B.1.1.5190.000596
ORF1ab/nsp2153T153AAcgGcg1212AY.250.000072
ORF1ab/nsp2153T153AAcgGcg1111AY.260.000311
ORF1ab/nsp2153T153AAcgGcg1111B.10.000101
ORF1ab/nsp2153T153AAcgGcg88AY.440.000049
ORF1ab/nsp2153T153AAcgGcg77AY.30.00007
ORF1ab/nsp2153T153AAcgGcg66B.1.4290.000141
ORF1ab/nsp2153T153AAcgGcg66P.1.140.000287
ORF1ab/nsp2153T153AAcGGcC250.111111
ORF1ab/nsp2153T153AAcgGcg250.111111
ORF1ab/nsp2153T153AAcGGcT150.055556
ORF1ab/nsp2153T153AAcgGcg55AY.470.000156
ORF1ab/nsp2153T153AAcgGcg44AY.690.000747
ORF1ab/nsp2153T153AAcgGcg44B.1.10.000073
ORF1ab/nsp2153T153AAcgGcg44B.1.3360.009756
ORF1ab/nsp2153T153AAcgGcg33AY.270.000194
ORF1ab/nsp2153T153AAcgGcg33AY.820.004071
ORF1ab/nsp2153T153AAcgGcg33B.1.1.2140.000166
ORF1ab/nsp2153T153AAcgGcg33B.1.20.000026
ORF1ab/nsp2153T153AAcgGcg22AY.200.000078
ORF1ab/nsp2153T153AAcgGcg22AY.840.000875
ORF1ab/nsp2153T153AAcgGcg22AY.99.20.000184
ORF1ab/nsp2153T153AAcgGcg22B.1.1.2160.001781
ORF1ab/nsp2153T153AAcgGcg22B.1.1.5230.003125
ORF1ab/nsp2153T153AAcgGcg22B.1.1600.000062
ORF1ab/nsp2153T153AAcgGcg22B.1.360.000292
ORF1ab/nsp2153T153AAcgGcg22B.1.466.20.000782
ORF1ab/nsp2153T153AAcgGcg11A.10.000282
ORF1ab/nsp2153T153AAcgGcg11AY.1030.000006
ORF1ab/nsp2153T153AAcgGcg11AY.1140.000231
ORF1ab/nsp2153T153AAcgGcg11AY.1160.000287
ORF1ab/nsp2153T153AAcgGcg11AY.1170.000085
ORF1ab/nsp2153T153AAcgGcg11AY.1180.000063
ORF1ab/nsp2153T153AAcgGcg11AY.230.00007
ORF1ab/nsp2153T153AAcgGcg11AY.3.10.000085
ORF1ab/nsp2153T153AAcgGcg11AY.330.000067
ORF1ab/nsp2153T153AAcgGcg11AY.390.000025
ORF1ab/nsp2153T153AAcgGcg11AY.410.000294
ORF1ab/nsp2153T153AAcgGcg11AY.460.000104
ORF1ab/nsp2153T153AAcgGcg11AY.46.40.000165
ORF1ab/nsp2153T153AAcgGcg11AY.490.003195
ORF1ab/nsp2153T153AAcgGcg11AY.7.10.000113
ORF1ab/nsp2153T153AAcgGcg11B.1.1.3190.017544
ORF1ab/nsp2153T153AAcgGcg11B.1.1.3910.008547
ORF1ab/nsp2153T153AAcgGcg11B.1.2700.005618
ORF1ab/nsp2153T153AAcgGcg11B.1.3510.00003
ORF1ab/nsp2153T153AAcgGcg11B.1.36.260.002857
ORF1ab/nsp2153T153AAcgGcg11B.1.3770.004566
ORF1ab/nsp2153T153AAcgGcg11B.1.3990.001934
ORF1ab/nsp2153T153AAcgGcg11B.1.4560.003268
ORF1ab/nsp2153T153AAcgGcg11B.1.5090.000866
ORF1ab/nsp2153T153AAcgGcg11C.370.000116
ORF1ab/nsp2153T153AAcgGcg11P.1.160.000374