CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 99 | S99S | S279S | syn | tcC | tcT | 6121 | 6076 | 0.992648 | 1100-1102 |
ORF1ab/nsp2 | 99 | S99S | S279S | syn | tcC | tcA | 6121 | 42 | 0.00686162 | 1100-1102 |
ORF1ab/nsp2 | 99 | S99S | S279S | syn | tcC | tcG | 6121 | 3 | 0.000490116 | 1100-1102 |
Details of the mutation S99S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 6076 | 6121 | All | 0.001162 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcA | 42 | 6121 | All | 0.000008 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcG | 3 | 6121 | All | 0.000001 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 986 | 987 | B.1.1.7 | 0.000883 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcA | 1 | 987 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 425 | 426 | B.1.2 | 0.003742 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcA | 1 | 426 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 377 | 377 | B.1.526 | 0.008861 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 365 | 367 | AY.4 | 0.000568 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcA | 2 | 367 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 309 | 310 | AY.43 | 0.001369 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcA | 1 | 310 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 298 | 298 | B.1.617.2 | 0.001122 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 268 | 269 | P.1 | 0.004222 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcA | 1 | 269 | P.1 | 0.000016 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 180 | 180 | B.1.1.519 | 0.007148 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 180 | 180 | B.1.596 | 0.015685 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 147 | 147 | AY.25 | 0.000884 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 144 | 144 | AY.39 | 0.003558 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 116 | 117 | B.1.351 | 0.003448 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcG | 1 | 117 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 113 | 113 | B.1.177 | 0.001488 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 109 | 109 | AY.3.1 | 0.009293 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 102 | 102 | AY.39.1 | 0.004041 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 98 | 101 | B.1 | 0.000898 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcA | 2 | 101 | B.1 | 0.000018 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcG | 1 | 101 | B.1 | 0.000009 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 93 | 94 | AY.44 | 0.000566 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcA | 1 | 94 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 80 | 80 | B.1.177.21 | 0.006118 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 72 | 72 | AY.119 | 0.002542 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 55 | 55 | AY.5 | 0.001136 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 46 | 54 | AY.3 | 0.000458 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcA | 8 | 54 | AY.3 | 0.00008 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 53 | 54 | B.1.429 | 0.001247 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcA | 1 | 54 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 52 | 52 | AY.103 | 0.000323 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 52 | 52 | AY.20 | 0.002021 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 52 | 52 | B.1.1 | 0.000943 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 50 | 50 | B.1.1.316 | 0.046253 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 46 | 46 | AY.26 | 0.001302 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 45 | 45 | B.1.456 | 0.147059 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 44 | 44 | AY.29 | 0.000694 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 43 | 43 | B.1.160 | 0.001341 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 41 | 41 | AY.100 | 0.001886 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 37 | 37 | AY.23 | 0.002581 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 35 | 35 | AY.29.1 | 0.007718 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 32 | 32 | AY.4.2 | 0.000694 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 32 | 32 | C.37 | 0.003714 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 28 | 28 | AD.2 | 0.006131 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 28 | 28 | B.1.243 | 0.001948 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 27 | 27 | AY.102 | 0.000716 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 27 | 27 | AY.98.1 | 0.001308 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 26 | 26 | Q.1 | 0.003284 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 23 | 23 | B.1.177.54 | 0.013948 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 21 | 21 | B.1.258.17 | 0.002183 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 20 | 20 | B.1.234 | 0.002639 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 18 | 18 | AY.120 | 0.000669 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 18 | 18 | AY.34 | 0.001745 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcA | 18 | 18 | P.1.13 | 0.016173 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 16 | 16 | B.1.1.39 | 0.008155 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 16 | 16 | B.1.36.29 | 0.008277 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 14 | 14 | AY.92 | 0.004022 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 13 | 13 | B | 0.001662 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 13 | 13 | B.1.427 | 0.000656 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 13 | 13 | B.1.637 | 0.00095 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 13 | 13 | P.1.7 | 0.004151 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 11 | 11 | A.2.5 | 0.005489 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 11 | 11 | AY.42 | 0.000443 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 11 | 11 | B.1.617.1 | 0.001419 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 10 | 10 | AY.45 | 0.001217 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 10 | 10 | AY.84 | 0.004374 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 10 | 10 | B.1.36 | 0.001459 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 10 | 10 | B.1.36.8 | 0.01 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 10 | 10 | P.1.16 | 0.003741 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 10 | 10 | Q.7 | 0.011111 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcA | 5 | 9 | AY.36 | 0.000741 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 4 | 9 | AY.36 | 0.000593 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 9 | 9 | AY.46.6 | 0.00065 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 9 | 9 | AY.61 | 0.000943 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 9 | 9 | B.1.258 | 0.000599 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 8 | 8 | A.1 | 0.002255 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 8 | 8 | AY.9.1 | 0.00067 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 8 | 8 | B.1.1.317 | 0.003294 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 8 | 8 | B.1.628 | 0.002819 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 8 | 8 | P.1.14 | 0.000382 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 7 | 7 | AY.27 | 0.000453 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 7 | 7 | AY.46 | 0.000729 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 7 | 7 | AY.47 | 0.000218 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 7 | 7 | AY.5.1 | 0.026316 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 7 | 7 | AY.65 | 0.003731 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 7 | 7 | AY.68 | 0.001916 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 7 | 7 | B.1.1.214 | 0.000388 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 7 | 7 | B.1.177.86 | 0.001284 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 7 | 7 | B.1.36.7 | 0.028 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 7 | 7 | B.1.361 | 0.009021 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 7 | 7 | C.37.1 | 0.018325 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 7 | 7 | C.38 | 0.056452 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 7 | 7 | P.2 | 0.001306 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 6 | 6 | AY.4.5 | 0.000645 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 6 | 6 | B.1.349 | 0.004289 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 5 | 5 | AY.101 | 0.002452 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 5 | 5 | AY.113 | 0.000712 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 5 | 5 | AY.118 | 0.000313 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 5 | 5 | AY.33 | 0.000334 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 5 | 5 | AY.56 | 0.008026 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 5 | 5 | B.1.1.222 | 0.00102 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 5 | 5 | B.1.1.434 | 0.001743 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 5 | 5 | B.1.160.16 | 0.004647 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 5 | 5 | B.1.311 | 0.001373 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 4 | 4 | AY.117 | 0.000338 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 4 | 4 | AY.120.1 | 0.001284 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 4 | 4 | AY.13 | 0.000644 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 4 | 4 | AY.14 | 0.000352 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 4 | 4 | B.1.1.303 | 0.01105 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 4 | 4 | B.1.1.372 | 0.002755 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 4 | 4 | B.1.110.3 | 0.002874 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 4 | 4 | B.1.265 | 0.005083 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 4 | 4 | B.1.428 | 0.004082 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 4 | 4 | B.1.588 | 0.00364 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 4 | 4 | C.14 | 0.017316 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 4 | 4 | P.1.15 | 0.000929 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 3 | 3 | A.2.5.3 | 0.030928 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 3 | 3 | AZ.2 | 0.002463 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 3 | 3 | B.1.1.170 | 0.003741 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 3 | 3 | B.1.1.70 | 0.001023 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 3 | 3 | B.1.177.12 | 0.000455 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 3 | 3 | B.1.177.62 | 0.003576 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 3 | 3 | B.1.351.3 | 0.002629 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 3 | 3 | B.1.367 | 0.002377 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 3 | 3 | B.1.466.2 | 0.001174 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 3 | 3 | P.1.12 | 0.001452 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 3 | 3 | P.3 | 0.004785 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 3 | 3 | P.6 | 0.009434 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 2 | 2 | AY.120.2.1 | 0.000997 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 2 | 2 | AZ.1 | 0.001735 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 2 | 2 | B.1.1.337 | 0.007194 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 2 | 2 | B.1.1.8 | 0.007168 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 2 | 2 | B.1.111 | 0.00235 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 2 | 2 | B.1.164 | 0.029851 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 2 | 2 | B.1.232 | 0.001075 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 2 | 2 | B.1.258.21 | 0.015504 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 2 | 2 | B.1.351.2 | 0.000605 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 2 | 2 | B.1.351.5 | 0.001199 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 2 | 2 | B.1.462 | 0.014493 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 2 | 2 | B.1.630 | 0.010471 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | AE.2 | 0.058824 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | AW.1 | 0.003049 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.1.171 | 0.003676 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.1.243 | 0.004082 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.1.29 | 0.010309 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.1.307 | 0.002532 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.1.528 | 0.004808 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.1.74 | 0.00431 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.104 | 0.00369 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.177.48 | 0.003125 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.177.52 | 0.001757 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.247 | 0.014925 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.305 | 0.002151 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcA | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.549 | 0.007194 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.578 | 0.017857 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.600 | 0.005848 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.9 | 0.006173 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.1.94 | 0.027027 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.12 | 0.00641 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcG | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | L.3 | 0.003546 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp2 | 99 | S99S | tcC | tcT | 1 | 1 | Z.1 | 0.00289 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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