CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = S99F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp299S99FS279FnonsyntCctTc503350270.9988081100-1102
ORF1ab/nsp299S99FS279FnonsyntCCtTT503360.001192131100-1102

Details of the mutation S99F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp299S99FtCctTc50275033All0.000961
ORF1ab/nsp299S99FtCCtTT65033All0.000001
ORF1ab/nsp299S99FtCctTc30693069AY.930.838067
ORF1ab/nsp299S99FtCctTc655660B.1.1.70.000586
ORF1ab/nsp299S99FtCCtTT5660B.1.1.70.000004
ORF1ab/nsp299S99FtCctTc317317AY.40.000493
ORF1ab/nsp299S99FtCctTc7777B.10.000705
ORF1ab/nsp299S99FtCctTc7071AY.430.00031
ORF1ab/nsp299S99FtCCtTT171AY.430.000004
ORF1ab/nsp299S99FtCctTc6565B.1.1.2740.328283
ORF1ab/nsp299S99FtCctTc5858B.1.1.141
ORF1ab/nsp299S99FtCctTc5151AY.1030.000317
ORF1ab/nsp299S99FtCctTc4646B.1.617.20.000173
ORF1ab/nsp299S99FtCctTc4343AY.250.000259
ORF1ab/nsp299S99FtCctTc3232P.10.000504
ORF1ab/nsp299S99FtCctTc2929B.1.10.000526
ORF1ab/nsp299S99FtCctTc2727B.1.1.4160.024434
ORF1ab/nsp299S99FtCctTc2626B.1.20.000229
ORF1ab/nsp299S99FtCctTc2525AY.260.000708
ORF1ab/nsp299S99FtCctTc1919AY.440.000116
ORF1ab/nsp299S99FtCctTc1818AY.420.000724
ORF1ab/nsp299S99FtCctTc1616B.1.258.170.001664
ORF1ab/nsp299S99FtCctTc1212AE.71
ORF1ab/nsp299S99FtCctTc1111AY.1190.000388
ORF1ab/nsp299S99FtCctTc1111AY.230.000767
ORF1ab/nsp299S99FtCctTc1111AY.4.20.000239
ORF1ab/nsp299S99FtCctTc1111B.1.1950.055276
ORF1ab/nsp299S99FtCctTc1010B.1.1770.000132
ORF1ab/nsp299S99FtCctTc1010P.1.10.003177
ORF1ab/nsp299S99FtCctTc99B.1.1.2140.000499
ORF1ab/nsp299S99FtCctTc88A0.003096
ORF1ab/nsp299S99FtCctTc88AY.1020.000212
ORF1ab/nsp299S99FtCctTc77AY.1170.000592
ORF1ab/nsp299S99FtCctTc77B.1.1600.000218
ORF1ab/nsp299S99FtCctTc77B.1.36.290.003621
ORF1ab/nsp299S99FtCctTc77Q.10.000884
ORF1ab/nsp299S99FtCctTc66B.1.2210.000426
ORF1ab/nsp299S99FtCctTc55AY.30.00005
ORF1ab/nsp299S99FtCctTc55AY.330.000334
ORF1ab/nsp299S99FtCctTc55AY.610.000524
ORF1ab/nsp299S99FtCctTc55B.1.1.1700.006234
ORF1ab/nsp299S99FtCctTc55B.1.1.2220.00102
ORF1ab/nsp299S99FtCctTc55B.1.1.3060.002192
ORF1ab/nsp299S99FtCctTc55B.1.2340.00066
ORF1ab/nsp299S99FtCctTc55B.1.617.10.000645
ORF1ab/nsp299S99FtCctTc44AY.1210.000541
ORF1ab/nsp299S99FtCctTc44AY.470.000124
ORF1ab/nsp299S99FtCctTc44B0.000511
ORF1ab/nsp299S99FtCctTc44B.1.1.330.001684
ORF1ab/nsp299S99FtCctTc44B.1.1.3480.003185
ORF1ab/nsp299S99FtCctTc44B.1.1.3720.002755
ORF1ab/nsp299S99FtCctTc44B.1.1.5190.000159
ORF1ab/nsp299S99FtCctTc44B.1.258.30.0067
ORF1ab/nsp299S99FtCctTc44B.1.360.000584
ORF1ab/nsp299S99FtCctTc44B.1.5960.000349
ORF1ab/nsp299S99FtCctTc44C.370.000464
ORF1ab/nsp299S99FtCctTc44Q.80.00066
ORF1ab/nsp299S99FtCctTc33AY.1110.000549
ORF1ab/nsp299S99FtCctTc33AY.290.000047
ORF1ab/nsp299S99FtCctTc33B.1.1.2320.005445
ORF1ab/nsp299S99FtCctTc33B.1.1.4340.001046
ORF1ab/nsp299S99FtCctTc33B.1.1.700.001023
ORF1ab/nsp299S99FtCctTc33B.1.1620.015075
ORF1ab/nsp299S99FtCctTc33B.1.2180.015464
ORF1ab/nsp299S99FtCctTc33B.1.5260.000071
ORF1ab/nsp299S99FtCctTc33P.1.150.000697
ORF1ab/nsp299S99FtCctTc22A.290.010638
ORF1ab/nsp299S99FtCctTc22AL.10.025974
ORF1ab/nsp299S99FtCctTc22AY.3.10.000171
ORF1ab/nsp299S99FtCctTc22AY.39.20.003082
ORF1ab/nsp299S99FtCctTc22AY.50.000041
ORF1ab/nsp299S99FtCctTc22AY.600.001876
ORF1ab/nsp299S99FtCctTc22AY.750.000112
ORF1ab/nsp299S99FtCctTc22AZ.30.00304
ORF1ab/nsp299S99FtCctTc22B.1.1.1890.003026
ORF1ab/nsp299S99FtCctTc22B.1.1.3970.004505
ORF1ab/nsp299S99FtCctTc22B.1.1.4480.004065
ORF1ab/nsp299S99FtCctTc22B.1.1.4490.045455
ORF1ab/nsp299S99FtCctTc22B.1.2350.005038
ORF1ab/nsp299S99FtCctTc22B.1.2400.000431
ORF1ab/nsp299S99FtCctTc22B.1.2450.0625
ORF1ab/nsp299S99FtCctTc22B.1.2580.000133
ORF1ab/nsp299S99FtCctTc22B.1.466.20.000782
ORF1ab/nsp299S99FtCctTc22B.1.4970.00063
ORF1ab/nsp299S99FtCctTc22B.1.5820.000981
ORF1ab/nsp299S99FtCctTc22B.1.6210.000177
ORF1ab/nsp299S99FtCctTc22P.1.140.000096
ORF1ab/nsp299S99FtCctTc22P.1.170.000324
ORF1ab/nsp299S99FtCctTc22R.10.00018
ORF1ab/nsp299S99FtCctTc110.055556
ORF1ab/nsp299S99FtCctTc11A.10.000282
ORF1ab/nsp299S99FtCctTc11A.2.5.20.001572
ORF1ab/nsp299S99FtCctTc11A.240.071429
ORF1ab/nsp299S99FtCctTc11AY.1000.000046
ORF1ab/nsp299S99FtCctTc11AY.1100.000113
ORF1ab/nsp299S99FtCctTc11AY.1200.000037
ORF1ab/nsp299S99FtCctTc11AY.160.00038
ORF1ab/nsp299S99FtCctTc11AY.200.000039
ORF1ab/nsp299S99FtCctTc11AY.340.000097
ORF1ab/nsp299S99FtCctTc11AY.34.10.00051
ORF1ab/nsp299S99FtCctTc11AY.360.000148
ORF1ab/nsp299S99FtCctTc11AY.370.000316
ORF1ab/nsp299S99FtCctTc11AY.390.000025
ORF1ab/nsp299S99FtCctTc11AY.39.10.00004
ORF1ab/nsp299S99FtCctTc11AY.4.2.10.000149
ORF1ab/nsp299S99FtCctTc11AY.4.50.000107
ORF1ab/nsp299S99FtCctTc11AY.46.60.000072
ORF1ab/nsp299S99FtCctTc11AY.530.000288
ORF1ab/nsp299S99FtCctTc11AY.570.000656
ORF1ab/nsp299S99FtCctTc11AY.670.000464
ORF1ab/nsp299S99FtCctTc11AY.730.000665
ORF1ab/nsp299S99FtCctTc11AY.75.10.00018
ORF1ab/nsp299S99FtCctTc11AY.830.001724
ORF1ab/nsp299S99FtCctTc11AY.9.10.000084
ORF1ab/nsp299S99FtCctTc11AY.9.20.000037
ORF1ab/nsp299S99FtCctTc11AY.980.000079
ORF1ab/nsp299S99FtCctTc11AY.98.10.000048
ORF1ab/nsp299S99FtCctTc11AY.99.20.000092
ORF1ab/nsp299S99FtCctTc11B.1.1.1010.01
ORF1ab/nsp299S99FtCctTc11B.1.1.1740.003378
ORF1ab/nsp299S99FtCctTc11B.1.1.1920.002309
ORF1ab/nsp299S99FtCctTc11B.1.1.2160.00089
ORF1ab/nsp299S99FtCctTc11B.1.1.2170.003636
ORF1ab/nsp299S99FtCctTc11B.1.1.2200.001859
ORF1ab/nsp299S99FtCctTc11B.1.1.2510.007937
ORF1ab/nsp299S99FtCctTc11B.1.1.270.00565
ORF1ab/nsp299S99FtCctTc11B.1.1.3180.000302
ORF1ab/nsp299S99FtCctTc11B.1.1.3340.016393
ORF1ab/nsp299S99FtCctTc11B.1.1.3580.034483
ORF1ab/nsp299S99FtCctTc11B.1.1.3680.003086
ORF1ab/nsp299S99FtCctTc11B.1.1.370.000193
ORF1ab/nsp299S99FtCctTc11B.1.1.390.00051
ORF1ab/nsp299S99FtCctTc11B.1.1.4090.002833
ORF1ab/nsp299S99FtCctTc11B.1.1.4210.030303
ORF1ab/nsp299S99FtCctTc11B.1.1.4640.001473
ORF1ab/nsp299S99FtCctTc11B.1.1.580.005376
ORF1ab/nsp299S99FtCctTc11B.1.1.630.000386
ORF1ab/nsp299S99FtCctTc11B.1.1.710.006061
ORF1ab/nsp299S99FtCctTc11B.1.1110.001175
ORF1ab/nsp299S99FtCctTc11B.1.177.350.000691
ORF1ab/nsp299S99FtCctTc11B.1.177.420.000894
ORF1ab/nsp299S99FtCctTc11B.1.177.520.001757
ORF1ab/nsp299S99FtCctTc11B.1.177.570.000281
ORF1ab/nsp299S99FtCctTc11B.1.177.580.001332
ORF1ab/nsp299S99FtCctTc11B.1.177.620.001192
ORF1ab/nsp299S99FtCctTc11B.1.177.690.001484
ORF1ab/nsp299S99FtCctTc11B.1.177.790.002342
ORF1ab/nsp299S99FtCctTc11B.1.177.810.000189
ORF1ab/nsp299S99FtCctTc11B.1.177.830.001481
ORF1ab/nsp299S99FtCctTc11B.1.177.870.000728
ORF1ab/nsp299S99FtCctTc11B.1.2060.000816
ORF1ab/nsp299S99FtCctTc11B.1.221.30.000833
ORF1ab/nsp299S99FtCctTc11B.1.30.002618
ORF1ab/nsp299S99FtCctTc11B.1.3060.005714
ORF1ab/nsp299S99FtCctTc11B.1.3360.002439
ORF1ab/nsp299S99FtCctTc11B.1.351.30.000876
ORF1ab/nsp299S99FtCctTc11B.1.36.260.002857
ORF1ab/nsp299S99FtCctTc11B.1.3750.00082
ORF1ab/nsp299S99FtCctTc11B.1.3800.006623
ORF1ab/nsp299S99FtCctTc11B.1.4040.001302
ORF1ab/nsp299S99FtCctTc11B.1.4270.00005
ORF1ab/nsp299S99FtCctTc11B.1.4990.00105
ORF1ab/nsp299S99FtCctTc11B.1.5700.002941
ORF1ab/nsp299S99FtCctTc11B.1.5950.000261
ORF1ab/nsp299S99FtCctTc11B.1.6090.000479
ORF1ab/nsp299S99FtCctTc11B.1.6310.003367
ORF1ab/nsp299S99FtCctTc11B.40.002208
ORF1ab/nsp299S99FtCctTc11B.60.00091
ORF1ab/nsp299S99FtCctTc11C.10.002392
ORF1ab/nsp299S99FtCctTc11C.140.004329
ORF1ab/nsp299S99FtCctTc11D.20.000075
ORF1ab/nsp299S99FtCctTc11K.30.006173
ORF1ab/nsp299S99FtCctTc11P.1.120.000484
ORF1ab/nsp299S99FtCctTc11P.1.70.000319
ORF1ab/nsp299S99FtCctTc11P.20.000187
ORF1ab/nsp299S99FtCctTc11U.10.012821
ORF1ab/nsp299S99FtCctTc11W.40.001351