CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = S430L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2430S430LS610LnonsyntCgtTg689068880.999712093-2095
ORF1ab/nsp2430S430LS610LnonsynTCgCTg689010.0001451382093-2095
ORF1ab/nsp2430S430LS610LnonsyntCGtTA689010.0001451382093-2095

Details of the mutation S430L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2430S430LtCgtTg68886890All0.001317
ORF1ab/nsp2430S430LTCgCTg16890All0
ORF1ab/nsp2430S430LtCGtTA16890All0
ORF1ab/nsp2430S430LtCgtTg17511751B.1.1.70.001568
ORF1ab/nsp2430S430LtCgtTg12191219AY.40.001897
ORF1ab/nsp2430S430LtCgtTg405405B.1.617.20.001525
ORF1ab/nsp2430S430LtCgtTg354355B.1.20.003117
ORF1ab/nsp2430S430LTCgCTg1355B.1.20.000009
ORF1ab/nsp2430S430LtCgtTg283283AY.440.001723
ORF1ab/nsp2430S430LtCgtTg183184AY.430.000811
ORF1ab/nsp2430S430LtCGtTA1184AY.430.000004
ORF1ab/nsp2430S430LtCgtTg177177B.1.1.250.100625
ORF1ab/nsp2430S430LtCgtTg136136B.1.1.5280.653846
ORF1ab/nsp2430S430LtCgtTg114114AY.1030.000708
ORF1ab/nsp2430S430LtCgtTg9999B.1.2210.007032
ORF1ab/nsp2430S430LtCgtTg9292B.10.000843
ORF1ab/nsp2430S430LtCgtTg8484B.1.2741
ORF1ab/nsp2430S430LtCgtTg8282AY.250.000493
ORF1ab/nsp2430S430LtCgtTg8080B.1.10.001451
ORF1ab/nsp2430S430LtCgtTg7777AY.30.000766
ORF1ab/nsp2430S430LtCgtTg7171B.1.1.340.934211
ORF1ab/nsp2430S430LtCgtTg6161AY.4.20.001323
ORF1ab/nsp2430S430LtCgtTg6161C.370.00708
ORF1ab/nsp2430S430LtCgtTg6060AY.50.001239
ORF1ab/nsp2430S430LtCgtTg5151AY.1200.001896
ORF1ab/nsp2430S430LtCgtTg5050B.60.045496
ORF1ab/nsp2430S430LtCgtTg4949B.1.1770.000645
ORF1ab/nsp2430S430LtCgtTg4545AY.1020.001193
ORF1ab/nsp2430S430LtCgtTg4545B.1.5260.001058
ORF1ab/nsp2430S430LtCgtTg4141B.1.4290.000965
ORF1ab/nsp2430S430LtCgtTg3939P.1.150.009061
ORF1ab/nsp2430S430LtCgtTg3939P.1.160.01459
ORF1ab/nsp2430S430LtCgtTg3838P.10.000599
ORF1ab/nsp2430S430LtCgtTg3636C.401
ORF1ab/nsp2430S430LtCgtTg3434AY.390.00084
ORF1ab/nsp2430S430LtCgtTg3131AY.200.001205
ORF1ab/nsp2430S430LtCgtTg2828AY.470.000871
ORF1ab/nsp2430S430LtCgtTg2727B.1.3690.007701
ORF1ab/nsp2430S430LtCgtTg2626AY.370.008217
ORF1ab/nsp2430S430LtCgtTg2424AY.98.10.001162
ORF1ab/nsp2430S430LtCgtTg2424B.1.3510.000713
ORF1ab/nsp2430S430LtCgtTg2222B.1.466.20.008607
ORF1ab/nsp2430S430LtCgtTg1919P.1.140.000908
ORF1ab/nsp2430S430LtCgtTg1919P.1.70.006066
ORF1ab/nsp2430S430LtCgtTg1818B.1.2400.00388
ORF1ab/nsp2430S430LtCgtTg1818B.1.2430.001253
ORF1ab/nsp2430S430LtCgtTg1717B.6.60.015111
ORF1ab/nsp2430S430LtCgtTg1616AY.3.10.001364
ORF1ab/nsp2430S430LtCgtTg1616AY.400.015429
ORF1ab/nsp2430S430LtCgtTg1616AY.610.001676
ORF1ab/nsp2430S430LtCgtTg1515AY.1160.004302
ORF1ab/nsp2430S430LtCgtTg1515AY.230.001046
ORF1ab/nsp2430S430LtCgtTg1515B.1.1.2650.047319
ORF1ab/nsp2430S430LtCgtTg1515D.41
ORF1ab/nsp2430S430LtCgtTg1313B.1.1.630.005015
ORF1ab/nsp2430S430LtCgtTg1212AY.260.00034
ORF1ab/nsp2430S430LtCgtTg1212AY.420.000483
ORF1ab/nsp2430S430LtCgtTg1212B.1.1.2220.002448
ORF1ab/nsp2430S430LtCgtTg1212B.1.5270.044444
ORF1ab/nsp2430S430LtCgtTg1212P.20.00224
ORF1ab/nsp2430S430LtCgtTg1111AY.450.001339
ORF1ab/nsp2430S430LtCgtTg1111AY.750.000616
ORF1ab/nsp2430S430LtCgtTg1111AY.90.000744
ORF1ab/nsp2430S430LtCgtTg1111AY.99.20.001014
ORF1ab/nsp2430S430LtCgtTg1111B.1.177.810.002083
ORF1ab/nsp2430S430LtCgtTg1010AY.290.000158
ORF1ab/nsp2430S430LtCgtTg1010AY.740.001156
ORF1ab/nsp2430S430LtCgtTg1010B.1.1.2940.012658
ORF1ab/nsp2430S430LtCgtTg1010B.1.1600.000312
ORF1ab/nsp2430S430LtCgtTg1010B.1.360.001459
ORF1ab/nsp2430S430LtCgtTg1010B.1.438.10.001073
ORF1ab/nsp2430S430LtCgtTg99B.1.1.1760.003954
ORF1ab/nsp2430S430LtCgtTg99B.1.1.2850.058824
ORF1ab/nsp2430S430LtCgtTg99B.1.2580.000599
ORF1ab/nsp2430S430LtCgtTg99B.1.4000.003861
ORF1ab/nsp2430S430LtCgtTg88AY.1190.000282
ORF1ab/nsp2430S430LtCgtTg88AY.39.10.000317
ORF1ab/nsp2430S430LtCgtTg88AY.60.000329
ORF1ab/nsp2430S430LtCgtTg88B.1.1.5190.000318
ORF1ab/nsp2430S430LtCgtTg88B.1.2340.001056
ORF1ab/nsp2430S430LtCgtTg88B.1.6370.000585
ORF1ab/nsp2430S430LtCgtTg88Q.40.003638
ORF1ab/nsp2430S430LtCgtTg77AY.330.000467
ORF1ab/nsp2430S430LtCgtTg77AY.380.003495
ORF1ab/nsp2430S430LtCgtTg77AY.7.20.003915
ORF1ab/nsp2430S430LtCgtTg77AY.9.20.000257
ORF1ab/nsp2430S430LtCgtTg77B.1.4270.000353
ORF1ab/nsp2430S430LtCgtTg77W.20.033816
ORF1ab/nsp2430S430LtCgtTg66AY.130.000966
ORF1ab/nsp2430S430LtCgtTg66AY.140.000528
ORF1ab/nsp2430S430LtCgtTg66AY.4.40.002455
ORF1ab/nsp2430S430LtCgtTg66B.1.1420.017391
ORF1ab/nsp2430S430LtCgtTg66B.1.5960.000523
ORF1ab/nsp2430S430LtCgtTg55AY.1170.000423
ORF1ab/nsp2430S430LtCgtTg55AY.1180.000313
ORF1ab/nsp2430S430LtCgtTg55AY.320.002662
ORF1ab/nsp2430S430LtCgtTg55AY.4.50.000537
ORF1ab/nsp2430S430LtCgtTg55AY.460.00052
ORF1ab/nsp2430S430LtCgtTg55AY.480.002326
ORF1ab/nsp2430S430LtCgtTg55AY.980.000395
ORF1ab/nsp2430S430LtCgtTg55D.50.024876
ORF1ab/nsp2430S430LtCgtTg44AY.46.30.003735
ORF1ab/nsp2430S430LtCgtTg44AY.5.30.00135
ORF1ab/nsp2430S430LtCgtTg44B.1.1.500.002716
ORF1ab/nsp2430S430LtCgtTg44B.1.351.20.00121
ORF1ab/nsp2430S430LtCgtTg44B.1.36.290.002069
ORF1ab/nsp2430S430LtCgtTg44B.1.5750.001214
ORF1ab/nsp2430S430LtCgtTg44D.20.0003
ORF1ab/nsp2430S430LtCgtTg33AY.10.001187
ORF1ab/nsp2430S430LtCgtTg33AY.1000.000138
ORF1ab/nsp2430S430LtCgtTg33AY.1210.000406
ORF1ab/nsp2430S430LtCgtTg33AY.20.001068
ORF1ab/nsp2430S430LtCgtTg33AY.23.10.001252
ORF1ab/nsp2430S430LtCgtTg33AY.270.000194
ORF1ab/nsp2430S430LtCgtTg33AY.360.000445
ORF1ab/nsp2430S430LtCgtTg33AY.410.000882
ORF1ab/nsp2430S430LtCgtTg33AY.710.001425
ORF1ab/nsp2430S430LtCgtTg33AY.75.10.000541
ORF1ab/nsp2430S430LtCgtTg33B0.000383
ORF1ab/nsp2430S430LtCgtTg33B.1.1.2140.000166
ORF1ab/nsp2430S430LtCgtTg33B.1.1.3060.001315
ORF1ab/nsp2430S430LtCgtTg33B.1.1.3970.006757
ORF1ab/nsp2430S430LtCgtTg33B.1.1.4340.001046
ORF1ab/nsp2430S430LtCgtTg33B.1.177.320.004049
ORF1ab/nsp2430S430LtCgtTg33B.1.177.80.002257
ORF1ab/nsp2430S430LtCgtTg33B.1.3110.000824
ORF1ab/nsp2430S430LtCgtTg33P.1.170.000485
ORF1ab/nsp2430S430LtCgtTg22A.10.000564
ORF1ab/nsp2430S430LtCgtTg22AY.1010.000981
ORF1ab/nsp2430S430LtCgtTg22AY.1110.000366
ORF1ab/nsp2430S430LtCgtTg22AY.160.000759
ORF1ab/nsp2430S430LtCgtTg22AY.240.000862
ORF1ab/nsp2430S430LtCgtTg22AY.500.001599
ORF1ab/nsp2430S430LtCgtTg22AY.590.001059
ORF1ab/nsp2430S430LtCgtTg22AY.7.10.000225
ORF1ab/nsp2430S430LtCgtTg22AY.770.002255
ORF1ab/nsp2430S430LtCgtTg22B.1.1.10.000653
ORF1ab/nsp2430S430LtCgtTg22B.1.1.2190.01
ORF1ab/nsp2430S430LtCgtTg22B.1.1.2300.018349
ORF1ab/nsp2430S430LtCgtTg22B.1.1.280.000622
ORF1ab/nsp2430S430LtCgtTg22B.1.1.3480.001592
ORF1ab/nsp2430S430LtCgtTg22B.1.1.3690.000892
ORF1ab/nsp2430S430LtCgtTg22B.1.1.3850.008929
ORF1ab/nsp2430S430LtCgtTg22B.1.1.3980.006452
ORF1ab/nsp2430S430LtCgtTg22B.1.1.570.022989
ORF1ab/nsp2430S430LtCgtTg22B.1.1.700.000682
ORF1ab/nsp2430S430LtCgtTg22B.1.177.600.000437
ORF1ab/nsp2430S430LtCgtTg22B.1.2410.001623
ORF1ab/nsp2430S430LtCgtTg22B.1.36.100.009569
ORF1ab/nsp2430S430LtCgtTg22B.1.36.170.000988
ORF1ab/nsp2430S430LtCgtTg22B.1.4780.023529
ORF1ab/nsp2430S430LtCgtTg22B.1.5400.019417
ORF1ab/nsp2430S430LtCgtTg22B.1.5770.001375
ORF1ab/nsp2430S430LtCgtTg22B.400.000729
ORF1ab/nsp2430S430LtCgtTg22Q.10.000253
ORF1ab/nsp2430S430LtCgtTg22Q.30.00029
ORF1ab/nsp2430S430LtCgtTg22Q.80.00033
ORF1ab/nsp2430S430LtCgtTg110.055556
ORF1ab/nsp2430S430LtCgtTg11A0.000387
ORF1ab/nsp2430S430LtCgtTg11A.2.50.000499
ORF1ab/nsp2430S430LtCgtTg11A.210.00277
ORF1ab/nsp2430S430LtCgtTg11A.23.10.000704
ORF1ab/nsp2430S430LtCgtTg11AB.10.008197
ORF1ab/nsp2430S430LtCgtTg11AD.20.000219
ORF1ab/nsp2430S430LtCgtTg11AE.80.000489
ORF1ab/nsp2430S430LtCgtTg11AU.20.002421
ORF1ab/nsp2430S430LtCgtTg11AY.1080.001103
ORF1ab/nsp2430S430LtCgtTg11AY.1090.00074
ORF1ab/nsp2430S430LtCgtTg11AY.1100.000113
ORF1ab/nsp2430S430LtCgtTg11AY.1130.000142
ORF1ab/nsp2430S430LtCgtTg11AY.1140.000231
ORF1ab/nsp2430S430LtCgtTg11AY.120.2.10.000498
ORF1ab/nsp2430S430LtCgtTg11AY.340.000097
ORF1ab/nsp2430S430LtCgtTg11AY.46.20.000635
ORF1ab/nsp2430S430LtCgtTg11AY.46.40.000165
ORF1ab/nsp2430S430LtCgtTg11AY.520.000814
ORF1ab/nsp2430S430LtCgtTg11AY.530.000288
ORF1ab/nsp2430S430LtCgtTg11AY.540.000095
ORF1ab/nsp2430S430LtCgtTg11AY.650.000533
ORF1ab/nsp2430S430LtCgtTg11AY.690.000187
ORF1ab/nsp2430S430LtCgtTg11AY.700.000209
ORF1ab/nsp2430S430LtCgtTg11AY.800.001129
ORF1ab/nsp2430S430LtCgtTg11AY.850.000427
ORF1ab/nsp2430S430LtCgtTg11AY.9.10.000084
ORF1ab/nsp2430S430LtCgtTg11AY.910.00073
ORF1ab/nsp2430S430LtCgtTg11AY.920.000287
ORF1ab/nsp2430S430LtCgtTg11AY.940.000443
ORF1ab/nsp2430S430LtCgtTg11AY.950.000761
ORF1ab/nsp2430S430LtCgtTg11AY.960.002075
ORF1ab/nsp2430S430LtCgtTg11AY.990.001049
ORF1ab/nsp2430S430LtCgtTg11AY.99.10.001553
ORF1ab/nsp2430S430LtCgtTg11B.1.1.1220.045455
ORF1ab/nsp2430S430LtCgtTg11B.1.1.1570.000913
ORF1ab/nsp2430S430LtCgtTg11B.1.1.1700.001247
ORF1ab/nsp2430S430LtCgtTg11B.1.1.2200.001859
ORF1ab/nsp2430S430LtCgtTg11B.1.1.2700.010309
ORF1ab/nsp2430S430LtCgtTg11B.1.1.3000.010753
ORF1ab/nsp2430S430LtCgtTg11B.1.1.3180.000302
ORF1ab/nsp2430S430LtCgtTg11B.1.1.3260.001761
ORF1ab/nsp2430S430LtCgtTg11B.1.1.330.000421
ORF1ab/nsp2430S430LtCgtTg11B.1.1.3670.055556
ORF1ab/nsp2430S430LtCgtTg11B.1.1.370.000193
ORF1ab/nsp2430S430LtCgtTg11B.1.1.3740.002375
ORF1ab/nsp2430S430LtCgtTg11B.1.1.3760.005952
ORF1ab/nsp2430S430LtCgtTg11B.1.1.390.00051
ORF1ab/nsp2430S430LtCgtTg11B.1.1.4090.002833
ORF1ab/nsp2430S430LtCgtTg11B.1.1.4160.000905
ORF1ab/nsp2430S430LtCgtTg11B.1.1.4170.002703
ORF1ab/nsp2430S430LtCgtTg11B.1.1.4190.007407
ORF1ab/nsp2430S430LtCgtTg11B.1.1.4860.001577
ORF1ab/nsp2430S430LtCgtTg11B.1.1.830.00271
ORF1ab/nsp2430S430LtCgtTg11B.1.1060.03125
ORF1ab/nsp2430S430LtCgtTg11B.1.110.30.000718
ORF1ab/nsp2430S430LtCgtTg11B.1.1260.001276
ORF1ab/nsp2430S430LtCgtTg11B.1.1280.000635
ORF1ab/nsp2430S430LtCgtTg11B.1.160.120.00641
ORF1ab/nsp2430S430LtCgtTg11B.1.160.160.000929
ORF1ab/nsp2430S430LtCgtTg11B.1.160.80.001289
ORF1ab/nsp2430S430LtCgtTg11B.1.1700.00431
ORF1ab/nsp2430S430LtCgtTg11B.1.177.170.000821
ORF1ab/nsp2430S430LtCgtTg11B.1.177.180.00116
ORF1ab/nsp2430S430LtCgtTg11B.1.177.190.001431
ORF1ab/nsp2430S430LtCgtTg11B.1.177.420.000894
ORF1ab/nsp2430S430LtCgtTg11B.1.177.550.002331
ORF1ab/nsp2430S430LtCgtTg11B.1.177.620.001192
ORF1ab/nsp2430S430LtCgtTg11B.1.177.860.000183
ORF1ab/nsp2430S430LtCgtTg11B.1.177.90.001332
ORF1ab/nsp2430S430LtCgtTg11B.1.2100.002132
ORF1ab/nsp2430S430LtCgtTg11B.1.220.001318
ORF1ab/nsp2430S430LtCgtTg11B.1.2320.000537
ORF1ab/nsp2430S430LtCgtTg11B.1.258.20.004505
ORF1ab/nsp2430S430LtCgtTg11B.1.258.50.008772
ORF1ab/nsp2430S430LtCgtTg11B.1.2600.003344
ORF1ab/nsp2430S430LtCgtTg11B.1.2820.014925
ORF1ab/nsp2430S430LtCgtTg11B.1.3240.001605
ORF1ab/nsp2430S430LtCgtTg11B.1.351.30.000876
ORF1ab/nsp2430S430LtCgtTg11B.1.351.50.0006
ORF1ab/nsp2430S430LtCgtTg11B.1.3570.009524
ORF1ab/nsp2430S430LtCgtTg11B.1.36.10.00114
ORF1ab/nsp2430S430LtCgtTg11B.1.36.350.002604
ORF1ab/nsp2430S430LtCgtTg11B.1.36.80.001
ORF1ab/nsp2430S430LtCgtTg11B.1.3670.000792
ORF1ab/nsp2430S430LtCgtTg11B.1.4220.000812
ORF1ab/nsp2430S430LtCgtTg11B.1.4280.00102
ORF1ab/nsp2430S430LtCgtTg11B.1.4560.003268
ORF1ab/nsp2430S430LtCgtTg11B.1.4700.001404
ORF1ab/nsp2430S430LtCgtTg11B.1.4970.000315
ORF1ab/nsp2430S430LtCgtTg11B.1.5090.000866
ORF1ab/nsp2430S430LtCgtTg11B.1.5250.000113
ORF1ab/nsp2430S430LtCgtTg11B.1.5380.008065
ORF1ab/nsp2430S430LtCgtTg11B.1.5430.01
ORF1ab/nsp2430S430LtCgtTg11B.1.5610.000397
ORF1ab/nsp2430S430LtCgtTg11B.1.5760.000907
ORF1ab/nsp2430S430LtCgtTg11B.1.5810.009434
ORF1ab/nsp2430S430LtCgtTg11B.1.6090.000479
ORF1ab/nsp2430S430LtCgtTg11B.1.617.10.000129
ORF1ab/nsp2430S430LtCgtTg11B.1.6180.004032
ORF1ab/nsp2430S430LtCgtTg11B.1.6210.000089
ORF1ab/nsp2430S430LtCgtTg11B.1.621.10.000506
ORF1ab/nsp2430S430LtCgtTg11B.1.6270.00202
ORF1ab/nsp2430S430LtCgtTg11B.1.6280.000352
ORF1ab/nsp2430S430LtCgtTg11B.1.6310.003367
ORF1ab/nsp2430S430LtCgtTg11B.1.6340.003425
ORF1ab/nsp2430S430LtCgtTg11B.1.6360.006711
ORF1ab/nsp2430S430LtCgtTg11B.1.780.008547
ORF1ab/nsp2430S430LtCgtTg11B.450.003831
ORF1ab/nsp2430S430LtCgtTg11C.180.002591
ORF1ab/nsp2430S430LtCgtTg11L.30.003546
ORF1ab/nsp2430S430LtCgtTg11P.1.90.004808
ORF1ab/nsp2430S430LtCgtTg11R.10.00009
ORF1ab/nsp2430S430LtCgtTg11W.30.005263