CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = S36S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp2	36	S36S	S216S	syn	tcC	tcT	1139268	1139204	0.999944	911-913
ORF1ab/nsp2	36	S36S	S216S	syn	tcC	tcA	1139268	58	0.0000509099	911-913
ORF1ab/nsp2	36	S36S	S216S	syn	tcC	tcG	1139268	6	0.00000526654	911-913

Details of the mutation S36S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp2	36	S36S	tcC	tcT	1139204	1139268	All	0.217886
ORF1ab/nsp2	36	S36S	tcC	tcA	58	1139268	All	0.000011
ORF1ab/nsp2	36	S36S	tcC	tcG	6	1139268	All	0.000001
ORF1ab/nsp2	36	S36S	tcC	tcT	1104634	1104639	B.1.1.7	0.988894
ORF1ab/nsp2	36	S36S	tcC	tcG	5	1104639	B.1.1.7	0.000004
ORF1ab/nsp2	36	S36S	tcC	tcT	7855	7855	Q.1	0.992294
ORF1ab/nsp2	36	S36S	tcC	tcT	6866	6866	Q.3	0.995794
ORF1ab/nsp2	36	S36S	tcC	tcT	5949	5949	Q.8	0.981036
ORF1ab/nsp2	36	S36S	tcC	tcT	3237	3238	B.1.1	0.058722
ORF1ab/nsp2	36	S36S	tcC	tcA	1	3238	B.1.1	0.000018
ORF1ab/nsp2	36	S36S	tcC	tcT	2185	2185	Q.4	0.993633
ORF1ab/nsp2	36	S36S	tcC	tcT	1625	1625	Q.2	0.996933
ORF1ab/nsp2	36	S36S	tcC	tcT	1451	1453	B.1	0.01329
ORF1ab/nsp2	36	S36S	tcC	tcA	2	1453	B.1	0.000018
ORF1ab/nsp2	36	S36S	tcC	tcT	898	898	Q.7	0.997778
ORF1ab/nsp2	36	S36S	tcC	tcT	346	346	B.1.36.26	0.988571
ORF1ab/nsp2	36	S36S	tcC	tcT	267	267	B.1.617.2	0.001005
ORF1ab/nsp2	36	S36S	tcC	tcT	252	261	AY.4	0.000392
ORF1ab/nsp2	36	S36S	tcC	tcA	9	261	AY.4	0.000014
ORF1ab/nsp2	36	S36S	tcC	tcT	206	206	B.1.177.73	0.116648
ORF1ab/nsp2	36	S36S	tcC	tcT	183	183	AY.44	0.001114
ORF1ab/nsp2	36	S36S	tcC	tcT	174	176	B.1.2	0.001532
ORF1ab/nsp2	36	S36S	tcC	tcA	2	176	B.1.2	0.000018
ORF1ab/nsp2	36	S36S	tcC	tcT	150	150	Q.6	0.993377
ORF1ab/nsp2	36	S36S	tcC	tcT	132	137	B.1.177	0.001738
ORF1ab/nsp2	36	S36S	tcC	tcA	5	137	B.1.177	0.000066
ORF1ab/nsp2	36	S36S	tcC	tcT	131	131	AY.33	0.008748
ORF1ab/nsp2	36	S36S	tcC	tcT	130	130	B.1.375	0.106557
ORF1ab/nsp2	36	S36S	tcC	tcT	102	102	AY.103	0.000633
ORF1ab/nsp2	36	S36S	tcC	tcT	89	90	AY.43	0.000394
ORF1ab/nsp2	36	S36S	tcC	tcA	1	90	AY.43	0.000004
ORF1ab/nsp2	36	S36S	tcC	tcT	83	83	AY.5	0.001714
ORF1ab/nsp2	36	S36S	tcC	tcT	63	65	P.1	0.000993
ORF1ab/nsp2	36	S36S	tcC	tcA	2	65	P.1	0.000032
ORF1ab/nsp2	36	S36S	tcC	tcT	62	62	B.1.526	0.001457
ORF1ab/nsp2	36	S36S	tcC	tcT	61	61	AY.121	0.008254
ORF1ab/nsp2	36	S36S	tcC	tcT	51	58	B.1.429	0.0012
ORF1ab/nsp2	36	S36S	tcC	tcA	7	58	B.1.429	0.000165
ORF1ab/nsp2	36	S36S	tcC	tcT	58	58	Q.5	0.983051
ORF1ab/nsp2	36	S36S	tcC	tcT	50	55	AY.25	0.000301
ORF1ab/nsp2	36	S36S	tcC	tcA	5	55	AY.25	0.00003
ORF1ab/nsp2	36	S36S	tcC	tcT	54	54	B.1.576	0.048957
ORF1ab/nsp2	36	S36S	tcC	tcT	46	48	B.1.1.519	0.001827
ORF1ab/nsp2	36	S36S	tcC	tcA	2	48	B.1.1.519	0.000079
ORF1ab/nsp2	36	S36S	tcC	tcT	48	48	B.1.221	0.00341
ORF1ab/nsp2	36	S36S	tcC	tcT	42	42	B	0.005368
ORF1ab/nsp2	36	S36S	tcC	tcT	41	41	B.1.1.409	0.116147
ORF1ab/nsp2	36	S36S	tcC	tcT	41	41	B.1.1.507	0.356522
ORF1ab/nsp2	36	S36S	tcC	tcT	40	40	B.1.177.7	0.006594
ORF1ab/nsp2	36	S36S	tcC	tcT	38	38	B.1.351.5	0.022782
ORF1ab/nsp2	36	S36S	tcC	tcT	38	38	B.1.427	0.001919
ORF1ab/nsp2	36	S36S	tcC	tcT	37	37	B.1.351	0.0011
ORF1ab/nsp2	36	S36S	tcC	tcT	34	36	AY.3	0.000338
ORF1ab/nsp2	36	S36S	tcC	tcA	2	36	AY.3	0.00002
ORF1ab/nsp2	36	S36S	tcC	tcT	32	32	B.1.1.205	0.118959
ORF1ab/nsp2	36	S36S	tcC	tcT	32	32	B.1.160	0.000998
ORF1ab/nsp2	36	S36S	tcC	tcT	30	30	B.1.243	0.002088
ORF1ab/nsp2	36	S36S	tcC	tcT	29	29	AY.100	0.001334
ORF1ab/nsp2	36	S36S	tcC	tcT	28	29	AY.26	0.000793
ORF1ab/nsp2	36	S36S	tcC	tcA	1	29	AY.26	0.000028
ORF1ab/nsp2	36	S36S	tcC	tcT	29	29	B.1.177.60	0.006335
ORF1ab/nsp2	36	S36S	tcC	tcT	29	29	B.1.564	0.012351
ORF1ab/nsp2	36	S36S	tcC	tcT	28	29	B.1.596	0.00244
ORF1ab/nsp2	36	S36S	tcC	tcA	1	29	B.1.596	0.000087
ORF1ab/nsp2	36	S36S	tcC	tcT	27	27	AY.36	0.004002
ORF1ab/nsp2	36	S36S	tcC	tcT	27	27	B.1.1.312	0.051625
ORF1ab/nsp2	36	S36S	tcC	tcT	26	26	AY.29	0.00041
ORF1ab/nsp2	36	S36S	tcC	tcT	25	25	AY.105	0.016077
ORF1ab/nsp2	36	S36S	tcC	tcT	25	25	AY.113	0.00356
ORF1ab/nsp2	36	S36S	tcC	tcT	25	25	B.1.1.298	0.021552
ORF1ab/nsp2	36	S36S	tcC	tcT	24	24	AY.102	0.000636
ORF1ab/nsp2	36	S36S	tcC	tcT	23	23	AY.116	0.006596
ORF1ab/nsp2	36	S36S	tcC	tcT	20	20	P.1.1	0.006353
ORF1ab/nsp2	36	S36S	tcC	tcT	19	19	B.1.1.220	0.035316
ORF1ab/nsp2	36	S36S	tcC	tcT	18	18	AY.20	0.0007
ORF1ab/nsp2	36	S36S	tcC	tcT	18	18	AY.47	0.00056
ORF1ab/nsp2	36	S36S	tcC	tcT	18	18	B.1.1.161	0.063604
ORF1ab/nsp2	36	S36S	tcC	tcT	18	18	B.1.525	0.002037
ORF1ab/nsp2	36	S36S	tcC	tcT	17	17	B.1.1.528	0.081731
ORF1ab/nsp2	36	S36S	tcC	tcT	17	17	C.37	0.001973
ORF1ab/nsp2	36	S36S	tcC	tcT	16	16	AY.42	0.000644
ORF1ab/nsp2	36	S36S	tcC	tcT	16	16	AY.75	0.000896
ORF1ab/nsp2	36	S36S	tcC	tcT	15	15	AY.39	0.000371
ORF1ab/nsp2	36	S36S	tcC	tcT	14	15	AY.4.2	0.000304
ORF1ab/nsp2	36	S36S	tcC	tcA	1	15	AY.4.2	0.000022
ORF1ab/nsp2	36	S36S	tcC	tcT	15	15	AY.68	0.004106
ORF1ab/nsp2	36	S36S	tcC	tcT	15	15	P.1.15	0.003485
ORF1ab/nsp2	36	S36S	tcC	tcT	13	13	AY.34	0.001261
ORF1ab/nsp2	36	S36S	tcC	tcT	13	13	B.1.177.42	0.011628
ORF1ab/nsp2	36	S36S	tcC	tcT	13	13	B.1.258	0.000865
ORF1ab/nsp2	36	S36S	tcC	tcT	12	13	B.1.637	0.000877
ORF1ab/nsp2	36	S36S	tcC	tcA	1	13	B.1.637	0.000073
ORF1ab/nsp2	36	S36S	tcC	tcT	12	12		0.666667
ORF1ab/nsp2	36	S36S	tcC	tcT	12	12	AY.30	0.004749
ORF1ab/nsp2	36	S36S	tcC	tcT	12	12	AY.53	0.00345
ORF1ab/nsp2	36	S36S	tcC	tcT	12	12	C.36.3	0.006807
ORF1ab/nsp2	36	S36S	tcC	tcT	11	11	B.1.623	0.005901
ORF1ab/nsp2	36	S36S	tcC	tcT	11	11	P.1.16	0.004115
ORF1ab/nsp2	36	S36S	tcC	tcT	10	10	B.1.1.214	0.000555
ORF1ab/nsp2	36	S36S	tcC	tcT	10	10	B.1.36.29	0.005173
ORF1ab/nsp2	36	S36S	tcC	tcT	10	10	P.1.12	0.00484
ORF1ab/nsp2	36	S36S	tcC	tcT	9	9	AY.45	0.001095
ORF1ab/nsp2	36	S36S	tcC	tcT	9	9	AY.9.2	0.000331
ORF1ab/nsp2	36	S36S	tcC	tcT	9	9	B.1.1.33	0.003788
ORF1ab/nsp2	36	S36S	tcC	tcT	9	9	B.1.177.81	0.001704
ORF1ab/nsp2	36	S36S	tcC	tcT	9	9	B.1.313	0.059211
ORF1ab/nsp2	36	S36S	tcC	tcT	9	9	B.1.36	0.001313
ORF1ab/nsp2	36	S36S	tcC	tcT	9	9	B.1.595	0.002349
ORF1ab/nsp2	36	S36S	tcC	tcT	7	8	AY.61	0.000733
ORF1ab/nsp2	36	S36S	tcC	tcA	1	8	AY.61	0.000105
ORF1ab/nsp2	36	S36S	tcC	tcT	8	8	AY.86	0.006639
ORF1ab/nsp2	36	S36S	tcC	tcT	8	8	AY.92	0.002298
ORF1ab/nsp2	36	S36S	tcC	tcT	8	8	B.1.1.39	0.004077
ORF1ab/nsp2	36	S36S	tcC	tcT	8	8	B.1.139	0.005865
ORF1ab/nsp2	36	S36S	tcC	tcT	8	8	B.1.234	0.001056
ORF1ab/nsp2	36	S36S	tcC	tcT	8	8	B.1.617.1	0.001032
ORF1ab/nsp2	36	S36S	tcC	tcT	6	7	AY.118	0.000376
ORF1ab/nsp2	36	S36S	tcC	tcA	1	7	AY.118	0.000063
ORF1ab/nsp2	36	S36S	tcC	tcT	7	7	AY.69	0.001307
ORF1ab/nsp2	36	S36S	tcC	tcT	7	7	AY.94	0.003099
ORF1ab/nsp2	36	S36S	tcC	tcT	5	7	B.1.258.17	0.00052
ORF1ab/nsp2	36	S36S	tcC	tcA	2	7	B.1.258.17	0.000208
ORF1ab/nsp2	36	S36S	tcC	tcT	7	7	B.1.609	0.003356
ORF1ab/nsp2	36	S36S	tcC	tcT	7	7	B.1.621	0.00062
ORF1ab/nsp2	36	S36S	tcC	tcT	7	7	P.1.7	0.002235
ORF1ab/nsp2	36	S36S	tcC	tcT	5	6	A	0.001935
ORF1ab/nsp2	36	S36S	tcC	tcA	1	6	A	0.000387
ORF1ab/nsp2	36	S36S	tcC	tcT	6	6	AY.117	0.000507
ORF1ab/nsp2	36	S36S	tcC	tcT	6	6	AY.119	0.000212
ORF1ab/nsp2	36	S36S	tcC	tcT	5	6	AY.23	0.000349
ORF1ab/nsp2	36	S36S	tcC	tcG	1	6	AY.23	0.00007
ORF1ab/nsp2	36	S36S	tcC	tcT	6	6	AY.35	0.001398
ORF1ab/nsp2	36	S36S	tcC	tcT	6	6	AY.98.1	0.000291
ORF1ab/nsp2	36	S36S	tcC	tcT	6	6	B.1.1.265	0.018927
ORF1ab/nsp2	36	S36S	tcC	tcT	5	6	D.2	0.000375
ORF1ab/nsp2	36	S36S	tcC	tcA	1	6	D.2	0.000075
ORF1ab/nsp2	36	S36S	tcC	tcT	6	6	P.1.17	0.000971
ORF1ab/nsp2	36	S36S	tcC	tcT	6	6	R.1	0.00054
ORF1ab/nsp2	36	S36S	tcC	tcT	5	5	AY.120	0.000186
ORF1ab/nsp2	36	S36S	tcC	tcT	5	5	AY.16.1	0.00235
ORF1ab/nsp2	36	S36S	tcC	tcT	5	5	AY.4.4	0.002046
ORF1ab/nsp2	36	S36S	tcC	tcT	5	5	B.1.1.10	0.005574
ORF1ab/nsp2	36	S36S	tcC	tcT	5	5	B.1.1.28	0.001556
ORF1ab/nsp2	36	S36S	tcC	tcT	5	5	B.1.1.70	0.001705
ORF1ab/nsp2	36	S36S	tcC	tcT	5	5	B.1.157	0.014925
ORF1ab/nsp2	36	S36S	tcC	tcT	5	5	B.1.240	0.001078
ORF1ab/nsp2	36	S36S	tcC	tcT	5	5	B.1.258.14	0.004902
ORF1ab/nsp2	36	S36S	tcC	tcA	4	5	B.1.362	0.006163
ORF1ab/nsp2	36	S36S	tcC	tcT	1	5	B.1.362	0.001541
ORF1ab/nsp2	36	S36S	tcC	tcT	5	5	B.1.411	0.018519
ORF1ab/nsp2	36	S36S	tcC	tcT	5	5	B.1.577	0.003436
ORF1ab/nsp2	36	S36S	tcC	tcT	5	5	P.1.10	0.001347
ORF1ab/nsp2	36	S36S	tcC	tcT	4	4	A.1	0.001127
ORF1ab/nsp2	36	S36S	tcC	tcT	4	4	AY.104	0.007937
ORF1ab/nsp2	36	S36S	tcC	tcT	3	4	AY.27	0.000194
ORF1ab/nsp2	36	S36S	tcC	tcA	1	4	AY.27	0.000065
ORF1ab/nsp2	36	S36S	tcC	tcT	4	4	AY.54	0.000381
ORF1ab/nsp2	36	S36S	tcC	tcT	4	4	B.1.1.294	0.005063
ORF1ab/nsp2	36	S36S	tcC	tcT	4	4	B.1.1.50	0.002716
ORF1ab/nsp2	36	S36S	tcC	tcT	4	4	B.1.177.86	0.000734
ORF1ab/nsp2	36	S36S	tcC	tcT	4	4	B.1.177.87	0.002911
ORF1ab/nsp2	36	S36S	tcC	tcT	4	4	B.1.36.8	0.004
ORF1ab/nsp2	36	S36S	tcC	tcT	4	4	B.1.369	0.001141
ORF1ab/nsp2	36	S36S	tcC	tcT	4	4	B.1.590	0.018182
ORF1ab/nsp2	36	S36S	tcC	tcT	4	4	B.1.599	0.014599
ORF1ab/nsp2	36	S36S	tcC	tcT	4	4	B.1.627	0.008081
ORF1ab/nsp2	36	S36S	tcC	tcT	4	4	B.1.628	0.001409
ORF1ab/nsp2	36	S36S	tcC	tcT	4	4	P.1.14	0.000191
ORF1ab/nsp2	36	S36S	tcC	tcT	3	3	A.2.5	0.001497
ORF1ab/nsp2	36	S36S	tcC	tcT	3	3	AY.13	0.000483
ORF1ab/nsp2	36	S36S	tcC	tcT	2	3	AY.14	0.000176
ORF1ab/nsp2	36	S36S	tcC	tcA	1	3	AY.14	0.000088
ORF1ab/nsp2	36	S36S	tcC	tcT	3	3	AY.3.1	0.000256
ORF1ab/nsp2	36	S36S	tcC	tcT	3	3	AY.38	0.001498
ORF1ab/nsp2	36	S36S	tcC	tcT	3	3	AY.4.2.1	0.000447
ORF1ab/nsp2	36	S36S	tcC	tcT	3	3	AY.46	0.000312
ORF1ab/nsp2	36	S36S	tcC	tcT	2	3	AY.5.4	0.000553
ORF1ab/nsp2	36	S36S	tcC	tcA	1	3	AY.5.4	0.000277
ORF1ab/nsp2	36	S36S	tcC	tcT	3	3	AY.74	0.000347
ORF1ab/nsp2	36	S36S	tcC	tcT	3	3	B.1.1.25	0.001706
ORF1ab/nsp2	36	S36S	tcC	tcT	3	3	B.1.1.318	0.000905
ORF1ab/nsp2	36	S36S	tcC	tcT	3	3	B.1.160.28	0.008772
ORF1ab/nsp2	36	S36S	tcC	tcT	3	3	B.1.177.6	0.00293
ORF1ab/nsp2	36	S36S	tcC	tcT	3	3	B.1.177.75	0.003122
ORF1ab/nsp2	36	S36S	tcC	tcT	3	3	B.1.206	0.002447
ORF1ab/nsp2	36	S36S	tcC	tcT	3	3	B.1.349	0.002144
ORF1ab/nsp2	36	S36S	tcC	tcT	3	3	B.1.36.10	0.014354
ORF1ab/nsp2	36	S36S	tcC	tcT	3	3	B.1.462	0.021739
ORF1ab/nsp2	36	S36S	tcC	tcT	3	3	B.1.466.2	0.001174
ORF1ab/nsp2	36	S36S	tcC	tcT	3	3	B.1.565	0.002431
ORF1ab/nsp2	36	S36S	tcC	tcT	3	3	B.1.619	0.002613
ORF1ab/nsp2	36	S36S	tcC	tcT	3	3	B.1.620	0.002838
ORF1ab/nsp2	36	S36S	tcC	tcT	3	3	B.1.633	0.125
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	AY.101	0.000981
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	AY.16	0.000759
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	AY.24	0.000862
ORF1ab/nsp2	36	S36S	tcC	tcA	1	2	AY.34.1	0.00051
ORF1ab/nsp2	36	S36S	tcC	tcT	1	2	AY.34.1	0.00051
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	AY.4.3	0.001684
ORF1ab/nsp2	36	S36S	tcC	tcA	1	2	AY.5.3	0.000337
ORF1ab/nsp2	36	S36S	tcC	tcT	1	2	AY.5.3	0.000337
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	AY.52	0.001629
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	AY.57	0.001312
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	AY.67	0.000929
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	AY.75.1	0.000361
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	AY.84	0.000875
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	AY.85	0.000854
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	AY.9	0.000135
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	AY.98	0.000158
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	B.1.1.222	0.000408
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	B.1.1.284	0.000215
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	B.1.1.315	0.016949
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	B.1.1.317	0.000823
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	B.1.1.348	0.001592
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	B.1.1.37	0.000386
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	B.1.1.370	0.025316
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	B.1.1.523	0.003125
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	B.1.1.525	0.010929
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	B.1.170	0.008621
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	B.1.177.15	0.001262
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	B.1.177.31	0.022989
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	B.1.177.41	0.005
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	B.1.177.52	0.003515
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	B.1.210	0.004264
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	B.1.214	0.007326
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	B.1.214.2	0.001199
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	B.1.237	0.00995
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	B.1.311	0.000549
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	B.1.36.1	0.002281
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	B.1.367	0.001585
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	B.1.396	0.001411
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	B.1.436	0.002058
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	B.1.456	0.006536
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	B.1.524	0.002813
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	B.1.544	0.012048
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	B.1.564.1	0.003155
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	B.1.575	0.000607
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	B.1.575.1	0.004878
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	B.1.580	0.00813
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	B.1.78	0.017094
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	B.1.9.5	0.011364
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	C.39	0.037736
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	P.1.10.1	0.01626
ORF1ab/nsp2	36	S36S	tcC	tcT	2	2	P.2	0.000373
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	A.2	0.000662
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	A.2.5.2	0.001572
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	A.23.1	0.000704
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	A.27	0.001656
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	A.28	0.002646
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	A.7	0.055556
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	AU.2	0.002421
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	AY.106	0.000335
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	AY.109	0.00074
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	AY.111	0.000183
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	AY.114	0.000231
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	AY.116.1	0.000311
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	AY.2	0.000356
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	AY.21	0.001898
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	AY.28	0.00189
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	AY.39.1	0.00004
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	AY.41	0.000294
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	AY.46.4	0.000165
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	AY.46.5	0.000198
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	AY.50	0.000799
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	AY.55	0.000917
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	AY.56	0.001605
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	AY.59	0.00053
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	AY.6	0.000041
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	AY.63	0.000387
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	AY.7	0.000196
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	AY.70	0.000209
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	AY.77	0.001127
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	AY.82	0.001357
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	AY.9.1	0.000084
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	AY.99	0.001049
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	AY.99.2	0.000092
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.1.1	0.000327
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.1.141	0.002012
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.1.153	0.001095
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.1.169	0.018182
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.1.170	0.001247
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.1.171	0.003676
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.1.176	0.000439
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.1.216	0.00089
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.1.228	0.003049
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.1.236	0.006897
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.1.277	0.000759
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.1.279	0.001121
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.1.280	0.003086
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.1.291	0.000742
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.1.301	0.001179
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.1.304	0.002809
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.1.34	0.013158
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.1.356	0.008547
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.1.365	0.005587
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.1.369	0.000446
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.1.374	0.002375
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.1.389	0.006061
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.1.406	0.006494
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.1.413	0.006897
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.1.434	0.000349
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.1.436	0.025641
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.1.448	0.002033
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.1.462	0.008621
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.1.464	0.001473
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.1.486	0.001577
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.1.524	0.020833
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.1.54	0.003021
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.1.55	0.012987
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.1.63	0.000386
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.1.98	0.018519
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.1.99	0.02381
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.147	0.000756
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.160.16	0.000929
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.177.12	0.000152
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.177.16	0.000664
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.177.33	0.001645
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.177.38	0.010417
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.177.4	0.000211
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.177.46	0.000918
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.177.51	0.004566
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.177.54	0.000606
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.177.56	0.000668
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.177.72	0.00339
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.177.8	0.000752
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.177.82	0.000477
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.177.83	0.001481
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.177.9	0.001332
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.221.3	0.000833
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.241	0.000812
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.3	0.002618
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.301	0.005917
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.324	0.001605
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.336	0.002439
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.351.2	0.000303
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.351.3	0.000876
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.36.25	0.002208
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.36.27	0.000763
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.36.39	0.002217
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.361	0.001289
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.380	0.006623
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.397	0.004854
ORF1ab/nsp2	36	S36S	tcC	tcA	1	1	B.1.398	0.002976
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.399	0.001934
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.428	0.00102
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.432	0.011236
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.445	0.011765
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.470	0.001404
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.505	0.004386
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.513	0.013889
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.517	0.000427
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.530	0.007143
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.538	0.008065
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.561	0.000397
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.568	0.001111
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.582	0.000491
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.596.1	0.009346
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.606	0.006024
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.621.1	0.000506
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.634	0.003425
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.636	0.006711
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.1.94	0.027027
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.11	0.005128
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	B.35	0.007812
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	C.16	0.00106
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	C.36	0.000911
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	N.6	0.007092
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	P.1.13	0.000898
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	P.1.2	0.001156
ORF1ab/nsp2	36	S36S	tcC	tcT	1	1	P.1.6	0.001946

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.