CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 36 | S36S | S216S | syn | tcC | tcT | 1139268 | 1139204 | 0.999944 | 911-913 |
ORF1ab/nsp2 | 36 | S36S | S216S | syn | tcC | tcA | 1139268 | 58 | 0.0000509099 | 911-913 |
ORF1ab/nsp2 | 36 | S36S | S216S | syn | tcC | tcG | 1139268 | 6 | 0.00000526654 | 911-913 |
Details of the mutation S36S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1139204 | 1139268 | All | 0.217886 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcA | 58 | 1139268 | All | 0.000011 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcG | 6 | 1139268 | All | 0.000001 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1104634 | 1104639 | B.1.1.7 | 0.988894 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcG | 5 | 1104639 | B.1.1.7 | 0.000004 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 7855 | 7855 | Q.1 | 0.992294 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 6866 | 6866 | Q.3 | 0.995794 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 5949 | 5949 | Q.8 | 0.981036 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 3237 | 3238 | B.1.1 | 0.058722 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcA | 1 | 3238 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2185 | 2185 | Q.4 | 0.993633 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1625 | 1625 | Q.2 | 0.996933 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1451 | 1453 | B.1 | 0.01329 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcA | 2 | 1453 | B.1 | 0.000018 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 898 | 898 | Q.7 | 0.997778 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 346 | 346 | B.1.36.26 | 0.988571 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 267 | 267 | B.1.617.2 | 0.001005 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 252 | 261 | AY.4 | 0.000392 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcA | 9 | 261 | AY.4 | 0.000014 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 206 | 206 | B.1.177.73 | 0.116648 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 183 | 183 | AY.44 | 0.001114 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 174 | 176 | B.1.2 | 0.001532 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcA | 2 | 176 | B.1.2 | 0.000018 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 150 | 150 | Q.6 | 0.993377 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 132 | 137 | B.1.177 | 0.001738 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcA | 5 | 137 | B.1.177 | 0.000066 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 131 | 131 | AY.33 | 0.008748 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 130 | 130 | B.1.375 | 0.106557 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 102 | 102 | AY.103 | 0.000633 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 89 | 90 | AY.43 | 0.000394 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcA | 1 | 90 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 83 | 83 | AY.5 | 0.001714 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 63 | 65 | P.1 | 0.000993 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcA | 2 | 65 | P.1 | 0.000032 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 62 | 62 | B.1.526 | 0.001457 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 61 | 61 | AY.121 | 0.008254 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 51 | 58 | B.1.429 | 0.0012 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcA | 7 | 58 | B.1.429 | 0.000165 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 58 | 58 | Q.5 | 0.983051 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 50 | 55 | AY.25 | 0.000301 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcA | 5 | 55 | AY.25 | 0.00003 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 54 | 54 | B.1.576 | 0.048957 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 46 | 48 | B.1.1.519 | 0.001827 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcA | 2 | 48 | B.1.1.519 | 0.000079 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 48 | 48 | B.1.221 | 0.00341 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 42 | 42 | B | 0.005368 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 41 | 41 | B.1.1.409 | 0.116147 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 41 | 41 | B.1.1.507 | 0.356522 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 40 | 40 | B.1.177.7 | 0.006594 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 38 | 38 | B.1.351.5 | 0.022782 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 38 | 38 | B.1.427 | 0.001919 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 37 | 37 | B.1.351 | 0.0011 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 34 | 36 | AY.3 | 0.000338 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcA | 2 | 36 | AY.3 | 0.00002 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 32 | 32 | B.1.1.205 | 0.118959 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 32 | 32 | B.1.160 | 0.000998 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 30 | 30 | B.1.243 | 0.002088 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 29 | 29 | AY.100 | 0.001334 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 28 | 29 | AY.26 | 0.000793 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcA | 1 | 29 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 29 | 29 | B.1.177.60 | 0.006335 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 29 | 29 | B.1.564 | 0.012351 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 28 | 29 | B.1.596 | 0.00244 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcA | 1 | 29 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 27 | 27 | AY.36 | 0.004002 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 27 | 27 | B.1.1.312 | 0.051625 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 26 | 26 | AY.29 | 0.00041 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 25 | 25 | AY.105 | 0.016077 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 25 | 25 | AY.113 | 0.00356 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 25 | 25 | B.1.1.298 | 0.021552 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 24 | 24 | AY.102 | 0.000636 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 23 | 23 | AY.116 | 0.006596 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 20 | 20 | P.1.1 | 0.006353 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 19 | 19 | B.1.1.220 | 0.035316 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 18 | 18 | AY.20 | 0.0007 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 18 | 18 | AY.47 | 0.00056 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 18 | 18 | B.1.1.161 | 0.063604 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 18 | 18 | B.1.525 | 0.002037 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 17 | 17 | B.1.1.528 | 0.081731 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 17 | 17 | C.37 | 0.001973 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 16 | 16 | AY.42 | 0.000644 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 16 | 16 | AY.75 | 0.000896 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 15 | 15 | AY.39 | 0.000371 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 14 | 15 | AY.4.2 | 0.000304 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcA | 1 | 15 | AY.4.2 | 0.000022 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 15 | 15 | AY.68 | 0.004106 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 15 | 15 | P.1.15 | 0.003485 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 13 | 13 | AY.34 | 0.001261 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 13 | 13 | B.1.177.42 | 0.011628 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 13 | 13 | B.1.258 | 0.000865 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 12 | 13 | B.1.637 | 0.000877 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcA | 1 | 13 | B.1.637 | 0.000073 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 12 | 12 | 0.666667 | |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 12 | 12 | AY.30 | 0.004749 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 12 | 12 | AY.53 | 0.00345 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 12 | 12 | C.36.3 | 0.006807 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 11 | 11 | B.1.623 | 0.005901 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 11 | 11 | P.1.16 | 0.004115 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 10 | 10 | B.1.1.214 | 0.000555 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 10 | 10 | B.1.36.29 | 0.005173 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 10 | 10 | P.1.12 | 0.00484 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 9 | 9 | AY.45 | 0.001095 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 9 | 9 | AY.9.2 | 0.000331 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 9 | 9 | B.1.1.33 | 0.003788 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 9 | 9 | B.1.177.81 | 0.001704 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 9 | 9 | B.1.313 | 0.059211 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 9 | 9 | B.1.36 | 0.001313 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 9 | 9 | B.1.595 | 0.002349 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 7 | 8 | AY.61 | 0.000733 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcA | 1 | 8 | AY.61 | 0.000105 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 8 | 8 | AY.86 | 0.006639 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 8 | 8 | AY.92 | 0.002298 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 8 | 8 | B.1.1.39 | 0.004077 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 8 | 8 | B.1.139 | 0.005865 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 8 | 8 | B.1.234 | 0.001056 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 8 | 8 | B.1.617.1 | 0.001032 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 6 | 7 | AY.118 | 0.000376 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcA | 1 | 7 | AY.118 | 0.000063 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 7 | 7 | AY.69 | 0.001307 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 7 | 7 | AY.94 | 0.003099 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 5 | 7 | B.1.258.17 | 0.00052 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcA | 2 | 7 | B.1.258.17 | 0.000208 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 7 | 7 | B.1.609 | 0.003356 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 7 | 7 | B.1.621 | 0.00062 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 7 | 7 | P.1.7 | 0.002235 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 5 | 6 | A | 0.001935 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcA | 1 | 6 | A | 0.000387 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 6 | 6 | AY.117 | 0.000507 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 6 | 6 | AY.119 | 0.000212 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 5 | 6 | AY.23 | 0.000349 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcG | 1 | 6 | AY.23 | 0.00007 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 6 | 6 | AY.35 | 0.001398 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 6 | 6 | AY.98.1 | 0.000291 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 6 | 6 | B.1.1.265 | 0.018927 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 5 | 6 | D.2 | 0.000375 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcA | 1 | 6 | D.2 | 0.000075 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 6 | 6 | P.1.17 | 0.000971 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 6 | 6 | R.1 | 0.00054 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 5 | 5 | AY.120 | 0.000186 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 5 | 5 | AY.16.1 | 0.00235 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 5 | 5 | AY.4.4 | 0.002046 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 5 | 5 | B.1.1.10 | 0.005574 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 5 | 5 | B.1.1.28 | 0.001556 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 5 | 5 | B.1.1.70 | 0.001705 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 5 | 5 | B.1.157 | 0.014925 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 5 | 5 | B.1.240 | 0.001078 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 5 | 5 | B.1.258.14 | 0.004902 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcA | 4 | 5 | B.1.362 | 0.006163 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 5 | B.1.362 | 0.001541 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 5 | 5 | B.1.411 | 0.018519 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 5 | 5 | B.1.577 | 0.003436 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 5 | 5 | P.1.10 | 0.001347 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 4 | 4 | A.1 | 0.001127 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 4 | 4 | AY.104 | 0.007937 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 3 | 4 | AY.27 | 0.000194 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcA | 1 | 4 | AY.27 | 0.000065 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 4 | 4 | AY.54 | 0.000381 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 4 | 4 | B.1.1.294 | 0.005063 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 4 | 4 | B.1.1.50 | 0.002716 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 4 | 4 | B.1.177.86 | 0.000734 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 4 | 4 | B.1.177.87 | 0.002911 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 4 | 4 | B.1.36.8 | 0.004 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 4 | 4 | B.1.369 | 0.001141 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 4 | 4 | B.1.590 | 0.018182 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 4 | 4 | B.1.599 | 0.014599 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 4 | 4 | B.1.627 | 0.008081 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 4 | 4 | B.1.628 | 0.001409 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 3 | AY.14 | 0.000176 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcA | 1 | 3 | AY.14 | 0.000088 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 3 | 3 | AY.3.1 | 0.000256 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 3 | 3 | AY.38 | 0.001498 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 3 | 3 | AY.4.2.1 | 0.000447 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 3 | AY.5.4 | 0.000553 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcA | 1 | 3 | AY.5.4 | 0.000277 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 3 | 3 | B.1.1.25 | 0.001706 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 3 | 3 | B.1.1.318 | 0.000905 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 3 | 3 | B.1.160.28 | 0.008772 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 3 | 3 | B.1.177.6 | 0.00293 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 3 | 3 | B.1.177.75 | 0.003122 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 3 | 3 | B.1.206 | 0.002447 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 3 | 3 | B.1.349 | 0.002144 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 3 | 3 | B.1.36.10 | 0.014354 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 3 | 3 | B.1.462 | 0.021739 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 3 | 3 | B.1.466.2 | 0.001174 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 3 | 3 | B.1.565 | 0.002431 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 3 | 3 | B.1.619 | 0.002613 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 3 | 3 | B.1.620 | 0.002838 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 3 | 3 | B.1.633 | 0.125 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | AY.101 | 0.000981 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | AY.24 | 0.000862 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcA | 1 | 2 | AY.34.1 | 0.00051 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 2 | AY.34.1 | 0.00051 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | AY.4.3 | 0.001684 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcA | 1 | 2 | AY.5.3 | 0.000337 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 2 | AY.5.3 | 0.000337 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | AY.52 | 0.001629 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | AY.57 | 0.001312 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | B.1.1.315 | 0.016949 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | B.1.1.370 | 0.025316 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | B.1.1.523 | 0.003125 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | B.1.1.525 | 0.010929 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | B.1.170 | 0.008621 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | B.1.177.15 | 0.001262 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | B.1.177.31 | 0.022989 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | B.1.177.41 | 0.005 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | B.1.177.52 | 0.003515 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | B.1.210 | 0.004264 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | B.1.214 | 0.007326 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | B.1.214.2 | 0.001199 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | B.1.237 | 0.00995 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | B.1.36.1 | 0.002281 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | B.1.436 | 0.002058 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | B.1.456 | 0.006536 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | B.1.524 | 0.002813 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | B.1.544 | 0.012048 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | B.1.564.1 | 0.003155 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | B.1.575.1 | 0.004878 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | B.1.580 | 0.00813 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | B.1.78 | 0.017094 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | B.1.9.5 | 0.011364 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | C.39 | 0.037736 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | P.1.10.1 | 0.01626 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | A.28 | 0.002646 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | A.7 | 0.055556 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | AU.2 | 0.002421 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.1.169 | 0.018182 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.1.171 | 0.003676 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.1.228 | 0.003049 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.1.280 | 0.003086 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.1.304 | 0.002809 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.1.34 | 0.013158 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.1.356 | 0.008547 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.1.365 | 0.005587 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.1.374 | 0.002375 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.1.406 | 0.006494 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.1.436 | 0.025641 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.1.462 | 0.008621 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.1.524 | 0.020833 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.1.55 | 0.012987 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.1.98 | 0.018519 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.1.99 | 0.02381 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.177.38 | 0.010417 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.177.72 | 0.00339 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.221.3 | 0.000833 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.3 | 0.002618 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.36.25 | 0.002208 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.36.27 | 0.000763 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.36.39 | 0.002217 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.380 | 0.006623 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcA | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.432 | 0.011236 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.445 | 0.011765 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.505 | 0.004386 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.513 | 0.013889 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.530 | 0.007143 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.596.1 | 0.009346 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.606 | 0.006024 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.1.94 | 0.027027 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.11 | 0.005128 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | B.35 | 0.007812 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | N.6 | 0.007092 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp2 | 36 | S36S | tcC | tcT | 1 | 1 | P.1.6 | 0.001946 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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