CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = S369S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2369S369SS549SsyntcCtcT29792295130.9906351910-1912
ORF1ab/nsp2369S369SS549SsyntcCtcA297922590.008693611910-1912
ORF1ab/nsp2369S369SS549SsyntcCtcG29792190.0006377551910-1912
ORF1ab/nsp2369S369SS549SsynTCCAGT2979210.00003356611910-1912

Details of the mutation S369S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2369S369StcCtcT2951329792All0.005645
ORF1ab/nsp2369S369StcCtcA25929792All0.00005
ORF1ab/nsp2369S369StcCtcG1929792All0.000004
ORF1ab/nsp2369S369STCCAGT129792All0
ORF1ab/nsp2369S369StcCtcT35303530B.1.4290.083057
ORF1ab/nsp2369S369StcCtcT30573099B.1.1.70.002737
ORF1ab/nsp2369S369StcCtcA313099B.1.1.70.000028
ORF1ab/nsp2369S369StcCtcG113099B.1.1.70.00001
ORF1ab/nsp2369S369StcCtcT29962996P.1.70.956577
ORF1ab/nsp2369S369StcCtcT21432143AY.440.013044
ORF1ab/nsp2369S369StcCtcT17971805AY.40.002797
ORF1ab/nsp2369S369StcCtcA81805AY.40.000012
ORF1ab/nsp2369S369StcCtcT13691400B.1.617.20.005155
ORF1ab/nsp2369S369StcCtcA311400B.1.617.20.000117
ORF1ab/nsp2369S369StcCtcT10921092P.1.130.981132
ORF1ab/nsp2369S369StcCtcT900900B.1.1.1530.985761
ORF1ab/nsp2369S369StcCtcT896896AY.50.018502
ORF1ab/nsp2369S369StcCtcT846846P.1.20.978035
ORF1ab/nsp2369S369StcCtcT638638B.1.20.005618
ORF1ab/nsp2369S369StcCtcT488569AY.430.002162
ORF1ab/nsp2369S369StcCtcA80569AY.430.000354
ORF1ab/nsp2369S369StcCtcG1569AY.430.000004
ORF1ab/nsp2369S369StcCtcT558563B.10.005111
ORF1ab/nsp2369S369StcCtcA5563B.10.000046
ORF1ab/nsp2369S369StcCtcT560560AY.400.540019
ORF1ab/nsp2369S369StcCtcT487499AY.250.002929
ORF1ab/nsp2369S369StcCtcA12499AY.250.000072
ORF1ab/nsp2369S369StcCtcT491491B.1.1.510.843643
ORF1ab/nsp2369S369StcCtcT477477B.1.6270.963636
ORF1ab/nsp2369S369StcCtcT343345P.10.005404
ORF1ab/nsp2369S369StcCtcA2345P.10.000032
ORF1ab/nsp2369S369StcCtcT323325AY.30.003213
ORF1ab/nsp2369S369StcCtcG2325AY.30.00002
ORF1ab/nsp2369S369StcCtcT319322B.1.10.005787
ORF1ab/nsp2369S369StcCtcA3322B.1.10.000054
ORF1ab/nsp2369S369StcCtcT270274AY.1030.001676
ORF1ab/nsp2369S369StcCtcG2274AY.1030.000012
ORF1ab/nsp2369S369StcCtcA2274AY.1030.000012
ORF1ab/nsp2369S369StcCtcT273274AY.470.008492
ORF1ab/nsp2369S369StcCtcA1274AY.470.000031
ORF1ab/nsp2369S369StcCtcT264264B.1.2430.01837
ORF1ab/nsp2369S369StcCtcT217217B.1.1770.002857
ORF1ab/nsp2369S369StcCtcT166169AY.230.011578
ORF1ab/nsp2369S369StcCtcA3169AY.230.000209
ORF1ab/nsp2369S369StcCtcT144144B.1.1.5190.005718
ORF1ab/nsp2369S369StcCtcT126126AY.46.60.009098
ORF1ab/nsp2369S369StcCtcT125125B.1.4270.006312
ORF1ab/nsp2369S369StcCtcT122122B.1.177.210.009329
ORF1ab/nsp2369S369StcCtcT120120B.1.1600.003743
ORF1ab/nsp2369S369StcCtcT113113AY.1000.005199
ORF1ab/nsp2369S369StcCtcT105106AY.260.002973
ORF1ab/nsp2369S369StcCtcA1106AY.260.000028
ORF1ab/nsp2369S369StcCtcT9797B.1.2210.00689
ORF1ab/nsp2369S369StcCtcT9090B.1.1.470.481283
ORF1ab/nsp2369S369StcCtcT8484AY.1020.002227
ORF1ab/nsp2369S369StcCtcT7676B.1.1.3180.022933
ORF1ab/nsp2369S369StcCtcT6572AY.390.001606
ORF1ab/nsp2369S369StcCtcA772AY.390.000173
ORF1ab/nsp2369S369StcCtcT7171B.1.1.3170.02923
ORF1ab/nsp2369S369StcCtcT7070AY.1190.002472
ORF1ab/nsp2369S369StcCtcT6868AY.1160.019501
ORF1ab/nsp2369S369StcCtcT6868AY.1200.002528
ORF1ab/nsp2369S369StcCtcT6565B.1.177.70.010715
ORF1ab/nsp2369S369StcCtcT6364B.1.3510.001873
ORF1ab/nsp2369S369StcCtcA164B.1.3510.00003
ORF1ab/nsp2369S369StcCtcT5661AY.290.000883
ORF1ab/nsp2369S369StcCtcA561AY.290.000079
ORF1ab/nsp2369S369StcCtcT5660AY.1180.003508
ORF1ab/nsp2369S369StcCtcA460AY.1180.000251
ORF1ab/nsp2369S369StcCtcT6060B.1.2340.007917
ORF1ab/nsp2369S369StcCtcT5860B.1.5260.001363
ORF1ab/nsp2369S369StcCtcA160B.1.5260.000024
ORF1ab/nsp2369S369StcCtcG160B.1.5260.000024
ORF1ab/nsp2369S369StcCtcT5657B0.007157
ORF1ab/nsp2369S369STCCAGT157B0.000128
ORF1ab/nsp2369S369StcCtcT5757B.1.1.10.018621
ORF1ab/nsp2369S369StcCtcT5656B.1.177.570.015735
ORF1ab/nsp2369S369StcCtcT5454B.1.3250.372414
ORF1ab/nsp2369S369StcCtcT5353C.370.006151
ORF1ab/nsp2369S369StcCtcT4949AY.140.004313
ORF1ab/nsp2369S369StcCtcT4747B.1.1.3110.016834
ORF1ab/nsp2369S369StcCtcT4747B.1.6370.003434
ORF1ab/nsp2369S369StcCtcT4646AY.4.20.000998
ORF1ab/nsp2369S369StcCtcT4646AY.99.20.004239
ORF1ab/nsp2369S369StcCtcT4143AY.60.001686
ORF1ab/nsp2369S369StcCtcA243AY.60.000082
ORF1ab/nsp2369S369StcCtcT3942AY.200.001516
ORF1ab/nsp2369S369StcCtcA342AY.200.000117
ORF1ab/nsp2369S369StcCtcT4242B.1.1.3680.12963
ORF1ab/nsp2369S369StcCtcT4141B.1.2580.002728
ORF1ab/nsp2369S369StcCtcT4040AY.240.017241
ORF1ab/nsp2369S369StcCtcT4040AY.930.010923
ORF1ab/nsp2369S369StcCtcT3939AY.420.001569
ORF1ab/nsp2369S369StcCtcT3839B.1.6210.003364
ORF1ab/nsp2369S369StcCtcA139B.1.6210.000089
ORF1ab/nsp2369S369StcCtcT3638AY.610.003772
ORF1ab/nsp2369S369StcCtcA238AY.610.00021
ORF1ab/nsp2369S369StcCtcT3838P.1.10.012071
ORF1ab/nsp2369S369StcCtcT3636AY.850.015378
ORF1ab/nsp2369S369StcCtcT3636B.1.1.280.011204
ORF1ab/nsp2369S369StcCtcT3636B.1.360.005252
ORF1ab/nsp2369S369StcCtcA3035B.1.177.810.00568
ORF1ab/nsp2369S369StcCtcT535B.1.177.810.000947
ORF1ab/nsp2369S369StcCtcT3535P.1.140.001673
ORF1ab/nsp2369S369StcCtcT3434AY.4.50.003655
ORF1ab/nsp2369S369StcCtcT3333P.1.170.005338
ORF1ab/nsp2369S369StcCtcT3232B.1.177.860.00587
ORF1ab/nsp2369S369StcCtcT3030AY.1210.00406
ORF1ab/nsp2369S369StcCtcT3030AY.9.20.001102
ORF1ab/nsp2369S369StcCtcT2929B.1.1.2220.005916
ORF1ab/nsp2369S369StcCtcT2929P.20.005412
ORF1ab/nsp2369S369StcCtcT2828AY.450.003407
ORF1ab/nsp2369S369StcCtcT2828AY.750.001569
ORF1ab/nsp2369S369StcCtcT2828B.1.5910.297872
ORF1ab/nsp2369S369StcCtcT2727AY.330.001803
ORF1ab/nsp2369S369StcCtcT2727B.1.36.290.013968
ORF1ab/nsp2369S369StcCtcT2626AD.20.005693
ORF1ab/nsp2369S369StcCtcT2626B.1.2320.013971
ORF1ab/nsp2369S369StcCtcT2525B.1.258.140.02451
ORF1ab/nsp2369S369StcCtcT2323AY.500.018385
ORF1ab/nsp2369S369StcCtcT2323B.1.1.2140.001276
ORF1ab/nsp2369S369StcCtcT2323B.1.5880.020928
ORF1ab/nsp2369S369StcCtcT2222A.280.058201
ORF1ab/nsp2369S369StcCtcT2222AY.1170.001859
ORF1ab/nsp2369S369StcCtcT2121AY.980.001659
ORF1ab/nsp2369S369StcCtcT2121B.1.1.2090.1875
ORF1ab/nsp2369S369StcCtcT2121B.1.1.500.014257
ORF1ab/nsp2369S369StcCtcT2121B.1.438.10.002252
ORF1ab/nsp2369S369StcCtcT2121B.1.80.04142
ORF1ab/nsp2369S369StcCtcT2020AY.360.002964
ORF1ab/nsp2369S369StcCtcT2020B.1.1.4870.111732
ORF1ab/nsp2369S369StcCtcT1920B.1.5960.001656
ORF1ab/nsp2369S369StcCtcA120B.1.5960.000087
ORF1ab/nsp2369S369StcCtcT1919AY.270.00123
ORF1ab/nsp2369S369StcCtcT1919B.1.1.4480.038618
ORF1ab/nsp2369S369StcCtcT1919B.1.3240.030498
ORF1ab/nsp2369S369StcCtcT1818AY.39.10.000713
ORF1ab/nsp2369S369StcCtcT1818B.1.1.370.003472
ORF1ab/nsp2369S369StcCtcT1818B.1.177.600.003932
ORF1ab/nsp2369S369StcCtcT1617AY.460.001665
ORF1ab/nsp2369S369StcCtcA117AY.460.000104
ORF1ab/nsp2369S369StcCtcT1717AY.90.001149
ORF1ab/nsp2369S369StcCtcT1717B.1.177.160.011296
ORF1ab/nsp2369S369StcCtcT1717B.1.5770.011684
ORF1ab/nsp2369S369StcCtcT1717B.1.5820.008342
ORF1ab/nsp2369S369StcCtcT1717C.1.20.07234
ORF1ab/nsp2369S369StcCtcT1717R.10.00153
ORF1ab/nsp2369S369StcCtcT1616AY.660.017112
ORF1ab/nsp2369S369StcCtcT1616B.1.466.20.00626
ORF1ab/nsp2369S369StcCtcT1616B.1.617.10.002063
ORF1ab/nsp2369S369StcCtcT1616P.1.160.005986
ORF1ab/nsp2369S369StcCtcT1515AY.480.006977
ORF1ab/nsp2369S369StcCtcT1515B.1.1.250.008528
ORF1ab/nsp2369S369StcCtcT1315D.20.000976
ORF1ab/nsp2369S369StcCtcA215D.20.00015
ORF1ab/nsp2369S369StcCtcT1414C.270.259259
ORF1ab/nsp2369S369StcCtcT1414Q.80.002309
ORF1ab/nsp2369S369StcCtcT1313AY.350.00303
ORF1ab/nsp2369S369StcCtcT1313C.10.0311
ORF1ab/nsp2369S369StcCtcT1212AY.5.40.00332
ORF1ab/nsp2369S369StcCtcT1212B.1.1.2440.184615
ORF1ab/nsp2369S369StcCtcT1212B.1.1.2580.039088
ORF1ab/nsp2369S369StcCtcT1212B.1.1620.060302
ORF1ab/nsp2369S369StcCtcT1212B.1.4800.029851
ORF1ab/nsp2369S369StcCtcT1111A0.004257
ORF1ab/nsp2369S369StcCtcT1111A.2.50.005489
ORF1ab/nsp2369S369StcCtcT1111AY.1100.00124
ORF1ab/nsp2369S369StcCtcT1111AY.5.30.003711
ORF1ab/nsp2369S369StcCtcT1111AY.98.10.000533
ORF1ab/nsp2369S369StcCtcT1111B.1.2360.022587
ORF1ab/nsp2369S369StcCtcT1111B.1.6230.005901
ORF1ab/nsp2369S369StcCtcT910AY.4.2.10.001341
ORF1ab/nsp2369S369StcCtcA110AY.4.2.10.000149
ORF1ab/nsp2369S369StcCtcT1010AY.680.002737
ORF1ab/nsp2369S369StcCtcT1010AY.740.001156
ORF1ab/nsp2369S369StcCtcT1010B.1.258.170.00104
ORF1ab/nsp2369S369StcCtcT1010B.1.4690.036101
ORF1ab/nsp2369S369StcCtcT1010B.6.60.008889
ORF1ab/nsp2369S369StcCtcT89AY.1110.001465
ORF1ab/nsp2369S369StcCtcA19AY.1110.000183
ORF1ab/nsp2369S369StcCtcT99B.1.1.3260.015845
ORF1ab/nsp2369S369StcCtcT99B.1.177.520.015817
ORF1ab/nsp2369S369StcCtcT99P.1.150.002091
ORF1ab/nsp2369S369StcCtcT88AY.1060.002679
ORF1ab/nsp2369S369StcCtcT88AY.120.002528
ORF1ab/nsp2369S369StcCtcT88AY.34.10.00408
ORF1ab/nsp2369S369StcCtcT88B.1.1.1250.081633
ORF1ab/nsp2369S369StcCtcT88B.1.3110.002197
ORF1ab/nsp2369S369StcCtcT88B.1.3670.006339
ORF1ab/nsp2369S369StcCtcT88B.1.5760.007253
ORF1ab/nsp2369S369StcCtcT88B.1.6340.027397
ORF1ab/nsp2369S369StcCtcT77A.10.001973
ORF1ab/nsp2369S369StcCtcT77AY.1140.001618
ORF1ab/nsp2369S369StcCtcT77AY.300.00277
ORF1ab/nsp2369S369StcCtcT67AY.9.10.000502
ORF1ab/nsp2369S369StcCtcA17AY.9.10.000084
ORF1ab/nsp2369S369StcCtcT77B.1.1.2940.008861
ORF1ab/nsp2369S369StcCtcT77B.1.1.3890.042424
ORF1ab/nsp2369S369StcCtcT47B.1.36.80.004
ORF1ab/nsp2369S369StcCtcA37B.1.36.80.003
ORF1ab/nsp2369S369StcCtcT77B.1.4000.003003
ORF1ab/nsp2369S369StcCtcT77B.1.4700.009831
ORF1ab/nsp2369S369StcCtcT77B.1.5950.001827
ORF1ab/nsp2369S369StcCtcT66AY.520.004886
ORF1ab/nsp2369S369StcCtcT66AY.690.00112
ORF1ab/nsp2369S369StcCtcT66AY.75.10.001082
ORF1ab/nsp2369S369StcCtcT66AY.80.003636
ORF1ab/nsp2369S369StcCtcT66B.1.1.2800.018519
ORF1ab/nsp2369S369StcCtcT66B.1.2400.001293
ORF1ab/nsp2369S369StcCtcT66B.1.4160.007614
ORF1ab/nsp2369S369StcCtcT66B.1.5250.000679
ORF1ab/nsp2369S369StcCtcT66C.360.005464
ORF1ab/nsp2369S369StcCtcT66P.30.009569
ORF1ab/nsp2369S369StcCtcT56Q.30.000725
ORF1ab/nsp2369S369StcCtcG16Q.30.000145
ORF1ab/nsp2369S369StcCtcT55AY.10.001979
ORF1ab/nsp2369S369StcCtcT55AY.3.10.000426
ORF1ab/nsp2369S369StcCtcT55AY.540.000477
ORF1ab/nsp2369S369StcCtcT55AY.770.005637
ORF1ab/nsp2369S369StcCtcT55AY.780.007704
ORF1ab/nsp2369S369StcCtcT55AY.840.002187
ORF1ab/nsp2369S369StcCtcT55AY.900.003422
ORF1ab/nsp2369S369StcCtcT55AY.920.001436
ORF1ab/nsp2369S369StcCtcT55AY.990.005247
ORF1ab/nsp2369S369StcCtcT55B.1.1.1590.023364
ORF1ab/nsp2369S369StcCtcT55B.1.1.1700.006234
ORF1ab/nsp2369S369StcCtcT55B.1.1.330.002104
ORF1ab/nsp2369S369StcCtcT55B.1.177.580.006658
ORF1ab/nsp2369S369StcCtcT55B.1.3890.00501
ORF1ab/nsp2369S369StcCtcT55B.1.4040.00651
ORF1ab/nsp2369S369StcCtcT55B.1.429.10.060241
ORF1ab/nsp2369S369StcCtcT55B.1.564.10.007886
ORF1ab/nsp2369S369StcCtcT55B.1.6050.029762
ORF1ab/nsp2369S369StcCtcT55Q.10.000632
ORF1ab/nsp2369S369StcCtcT44AY.1130.00057
ORF1ab/nsp2369S369StcCtcT24AY.120.10.000642
ORF1ab/nsp2369S369StcCtcA24AY.120.10.000642
ORF1ab/nsp2369S369StcCtcT44AY.120.20.005141
ORF1ab/nsp2369S369StcCtcT34AY.16.10.00141
ORF1ab/nsp2369S369StcCtcA14AY.16.10.00047
ORF1ab/nsp2369S369StcCtcT44AY.320.00213
ORF1ab/nsp2369S369StcCtcT44AY.530.00115
ORF1ab/nsp2369S369StcCtcT44AY.70.000784
ORF1ab/nsp2369S369StcCtcT44B.1.1.1210.009709
ORF1ab/nsp2369S369StcCtcT44B.1.1.2070.004728
ORF1ab/nsp2369S369StcCtcT44B.1.1.2650.012618
ORF1ab/nsp2369S369StcCtcT44B.1.1.3060.001754
ORF1ab/nsp2369S369StcCtcT44B.1.1.4340.001394
ORF1ab/nsp2369S369StcCtcT44B.1.1.5160.266667
ORF1ab/nsp2369S369StcCtcT44B.1.1.740.017241
ORF1ab/nsp2369S369StcCtcT44B.1.1580.095238
ORF1ab/nsp2369S369StcCtcT44B.1.177.450.001525
ORF1ab/nsp2369S369StcCtcT44B.1.177.50.004969
ORF1ab/nsp2369S369StcCtcT44B.1.177.820.001909
ORF1ab/nsp2369S369StcCtcT44B.1.2650.005083
ORF1ab/nsp2369S369StcCtcT34B.1.351.30.002629
ORF1ab/nsp2369S369StcCtcA14B.1.351.30.000876
ORF1ab/nsp2369S369StcCtcT44B.1.36.180.001681
ORF1ab/nsp2369S369StcCtcT44B.1.3960.002823
ORF1ab/nsp2369S369StcCtcT44B.1.5370.08
ORF1ab/nsp2369S369StcCtcT44B.1.5610.001588
ORF1ab/nsp2369S369StcCtcT44N.60.028369
ORF1ab/nsp2369S369StcCtcT33AY.1010.001471
ORF1ab/nsp2369S369StcCtcT33AY.340.000291
ORF1ab/nsp2369S369StcCtcT33AY.46.20.001906
ORF1ab/nsp2369S369StcCtcT33AY.5.10.011278
ORF1ab/nsp2369S369StcCtcT33AY.510.002727
ORF1ab/nsp2369S369StcCtcT33AY.620.001307
ORF1ab/nsp2369S369StcCtcT33AY.880.002653
ORF1ab/nsp2369S369StcCtcT33B.1.1.1410.006036
ORF1ab/nsp2369S369StcCtcT33B.1.1.2190.015
ORF1ab/nsp2369S369StcCtcT33B.1.1.2200.005576
ORF1ab/nsp2369S369StcCtcT33B.1.1.2840.000322
ORF1ab/nsp2369S369StcCtcT33B.1.1.3160.002775
ORF1ab/nsp2369S369StcCtcT33B.1.1.3540.013158
ORF1ab/nsp2369S369StcCtcT33B.1.1.4330.004274
ORF1ab/nsp2369S369StcCtcT33B.1.1.4640.004418
ORF1ab/nsp2369S369StcCtcT33B.1.1110.003525
ORF1ab/nsp2369S369StcCtcT33B.1.1260.003827
ORF1ab/nsp2369S369StcCtcT33B.1.1390.002199
ORF1ab/nsp2369S369StcCtcT33B.1.1470.002268
ORF1ab/nsp2369S369StcCtcT33B.1.214.20.001799
ORF1ab/nsp2369S369StcCtcT33B.1.3690.000856
ORF1ab/nsp2369S369StcCtcT33B.1.3990.005803
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