CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = S248R

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2248S248RS428RnonsynAgcCgc225121450.952911547-1549
ORF1ab/nsp2248S248RS428RnonsynagCagA22511020.04531321547-1549
ORF1ab/nsp2248S248RS428RnonsynagCagG225140.001776991547-1549

Details of the mutation S248R within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2248S248RAgcCgc21452251All0.00041
ORF1ab/nsp2248S248RagCagA1022251All0.00002
ORF1ab/nsp2248S248RagCagG42251All0.000001
ORF1ab/nsp2248S248RAgcCgc642647B.1.1.70.000575
ORF1ab/nsp2248S248RagCagA5647B.1.1.70.000004
ORF1ab/nsp2248S248RAgcCgc337338AY.430.001493
ORF1ab/nsp2248S248RagCagA1338AY.430.000004
ORF1ab/nsp2248S248RAgcCgc293296B.1.617.20.001103
ORF1ab/nsp2248S248RagCagA3296B.1.617.20.000011
ORF1ab/nsp2248S248RAgcCgc112112AY.75.10.020195
ORF1ab/nsp2248S248RAgcCgc101101AY.4.50.010857
ORF1ab/nsp2248S248RAgcCgc9596AY.40.000148
ORF1ab/nsp2248S248RagCagA196AY.40.000002
ORF1ab/nsp2248S248RAgcCgc4949AY.46.60.003538
ORF1ab/nsp2248S248RAgcCgc4848AY.98.10.002325
ORF1ab/nsp2248S248RAgcCgc4242AY.410.012346
ORF1ab/nsp2248S248RagCagA4242B.1.20.00037
ORF1ab/nsp2248S248RAgcCgc4040B.1.258.170.004159
ORF1ab/nsp2248S248RAgcCgc3636AY.9.10.003014
ORF1ab/nsp2248S248RAgcCgc3434AY.50.000702
ORF1ab/nsp2248S248RAgcCgc3030Q.10.00379
ORF1ab/nsp2248S248RAgcCgc2525B.10.000229
ORF1ab/nsp2248S248RAgcCgc2323AY.420.000925
ORF1ab/nsp2248S248RagCagA1217B.1.3510.000357
ORF1ab/nsp2248S248RAgcCgc517B.1.3510.000149
ORF1ab/nsp2248S248RAgcCgc1414AY.460.001457
ORF1ab/nsp2248S248RagCagA1313AY.4.20.000282
ORF1ab/nsp2248S248RAgcCgc1313AY.7.10.001465
ORF1ab/nsp2248S248RAgcCgc1313AY.9.20.000477
ORF1ab/nsp2248S248RAgcCgc1111AY.4.40.004501
ORF1ab/nsp2248S248RAgcCgc910B.1.10.000163
ORF1ab/nsp2248S248RagCagG110B.1.10.000018
ORF1ab/nsp2248S248RAgcCgc99AY.90.000608
ORF1ab/nsp2248S248RAgcCgc99AY.980.000711
ORF1ab/nsp2248S248RAgcCgc77AY.1060.002344
ORF1ab/nsp2248S248RAgcCgc77AY.950.005327
ORF1ab/nsp2248S248RAgcCgc47P.10.000063
ORF1ab/nsp2248S248RagCagA27P.10.000032
ORF1ab/nsp2248S248RagCagG17P.10.000016
ORF1ab/nsp2248S248RAgcCgc66AY.1160.001721
ORF1ab/nsp2248S248RAgcCgc66AY.4.30.005051
ORF1ab/nsp2248S248RAgcCgc66AY.680.001642
ORF1ab/nsp2248S248RAgcCgc66B.1.2580.000399
ORF1ab/nsp2248S248RAgcCgc66Q.40.002729
ORF1ab/nsp2248S248RAgcCgc44AY.1110.000733
ORF1ab/nsp2248S248RAgcCgc44AY.230.000279
ORF1ab/nsp2248S248RAgcCgc44AY.330.000267
ORF1ab/nsp2248S248RAgcCgc44AY.340.000388
ORF1ab/nsp2248S248RAgcCgc44AY.700.000834
ORF1ab/nsp2248S248RAgcCgc44B0.000511
ORF1ab/nsp2248S248RagCagA44B.1.4270.000202
ORF1ab/nsp2248S248RAgcCgc44C.36.30.002269
ORF1ab/nsp2248S248RAgcCgc33AT.10.015385
ORF1ab/nsp2248S248RAgcCgc33AY.1200.000112
ORF1ab/nsp2248S248RAgcCgc33AY.240.001293
ORF1ab/nsp2248S248RAgcCgc33AY.250.000018
ORF1ab/nsp2248S248RagCagA23AY.360.000296
ORF1ab/nsp2248S248RAgcCgc13AY.360.000148
ORF1ab/nsp2248S248RAgcCgc33AY.46.40.000494
ORF1ab/nsp2248S248RAgcCgc33AY.60.000123
ORF1ab/nsp2248S248RAgcCgc33AY.600.002814
ORF1ab/nsp2248S248RAgcCgc33AY.7.20.001678
ORF1ab/nsp2248S248RagCagA33B.1.2430.000209
ORF1ab/nsp2248S248RAgcCgc22AY.1180.000125
ORF1ab/nsp2248S248RAgcCgc22AY.30.00002
ORF1ab/nsp2248S248RAgcCgc22AY.450.000243
ORF1ab/nsp2248S248RAgcCgc22AY.580.001815
ORF1ab/nsp2248S248RAgcCgc22AY.710.00095
ORF1ab/nsp2248S248RAgcCgc22AY.840.000875
ORF1ab/nsp2248S248RAgcCgc22AY.910.001461
ORF1ab/nsp2248S248RAgcCgc22AY.920.000575
ORF1ab/nsp2248S248RAgcCgc22B.1.1.3630.011976
ORF1ab/nsp2248S248RAgcCgc22B.1.1600.000062
ORF1ab/nsp2248S248RAgcCgc22B.1.5270.007407
ORF1ab/nsp2248S248RAgcCgc22B.1.910.004149
ORF1ab/nsp2248S248RagCagA22B.400.000729
ORF1ab/nsp2248S248RAgcCgc22Q.80.00033
ORF1ab/nsp2248S248RagCagG110.055556
ORF1ab/nsp2248S248RAgcCgc11AY.1020.000027
ORF1ab/nsp2248S248RagCagA11AY.1030.000006
ORF1ab/nsp2248S248RAgcCgc11AY.1080.001103
ORF1ab/nsp2248S248RagCagA11AY.1090.00074
ORF1ab/nsp2248S248RAgcCgc11AY.1130.000142
ORF1ab/nsp2248S248RagCagA11AY.120.10.000321
ORF1ab/nsp2248S248RAgcCgc11AY.260.000028
ORF1ab/nsp2248S248RagCagA11AY.390.000025
ORF1ab/nsp2248S248RAgcCgc11AY.46.50.000198
ORF1ab/nsp2248S248RAgcCgc11AY.5.40.000277
ORF1ab/nsp2248S248RAgcCgc11AY.530.000288
ORF1ab/nsp2248S248RAgcCgc11AY.730.000665
ORF1ab/nsp2248S248RAgcCgc11AY.970.001701
ORF1ab/nsp2248S248RAgcCgc11B.1.1.1940.00495
ORF1ab/nsp2248S248RAgcCgc11B.1.1.3170.000412
ORF1ab/nsp2248S248RAgcCgc11B.1.1.4330.001425
ORF1ab/nsp2248S248RAgcCgc11B.1.1.5230.001563
ORF1ab/nsp2248S248RAgcCgc11B.1.1.580.005376
ORF1ab/nsp2248S248RAgcCgc11B.1.1.700.000341
ORF1ab/nsp2248S248RAgcCgc11B.1.1460.004237
ORF1ab/nsp2248S248RAgcCgc11B.1.1490.003425
ORF1ab/nsp2248S248RAgcCgc11B.1.1770.000013
ORF1ab/nsp2248S248RAgcCgc11B.1.177.510.004566
ORF1ab/nsp2248S248RAgcCgc11B.1.177.600.000218
ORF1ab/nsp2248S248RAgcCgc11B.1.177.790.002342
ORF1ab/nsp2248S248RAgcCgc11B.1.177.830.001481
ORF1ab/nsp2248S248RAgcCgc11B.1.2210.000071
ORF1ab/nsp2248S248RagCagA11B.1.2390.001221
ORF1ab/nsp2248S248RagCagA11B.1.2650.001271
ORF1ab/nsp2248S248RagCagA11B.1.360.000146
ORF1ab/nsp2248S248RagCagA11B.1.3960.000706
ORF1ab/nsp2248S248RagCagG11B.1.4170.028571
ORF1ab/nsp2248S248RAgcCgc11B.1.4820.083333
ORF1ab/nsp2248S248RagCagA11B.1.5150.014493
ORF1ab/nsp2248S248RagCagA11B.1.5260.000024
ORF1ab/nsp2248S248RAgcCgc11B.1.6250.002353
ORF1ab/nsp2248S248RAgcCgc11B.550.00295
ORF1ab/nsp2248S248RagCagA11C.370.000116
ORF1ab/nsp2248S248RAgcCgc11P.1.10.000318
ORF1ab/nsp2248S248RagCagA11P.20.000187
ORF1ab/nsp2248S248RAgcCgc11Q.20.000613