CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = S211S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2211S211SS391SsyntcTtcC11987610.6352251436-1438
ORF1ab/nsp2211S211SS391SsyntcTtcG11982890.2412351436-1438
ORF1ab/nsp2211S211SS391SsyntcTtcA11981480.1235391436-1438

Details of the mutation S211S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2211S211StcTtcC7611198All0.000146
ORF1ab/nsp2211S211StcTtcG2891198All0.000055
ORF1ab/nsp2211S211StcTtcA1481198All0.000028
ORF1ab/nsp2211S211StcTtcC349353B.1.20.003073
ORF1ab/nsp2211S211StcTtcG4353B.1.20.000035
ORF1ab/nsp2211S211StcTtcC164171AY.40.000255
ORF1ab/nsp2211S211StcTtcG6171AY.40.000009
ORF1ab/nsp2211S211StcTtcA1171AY.40.000002
ORF1ab/nsp2211S211StcTtcG132132B.1.3250.910345
ORF1ab/nsp2211S211StcTtcC61124B.1.1.70.000055
ORF1ab/nsp2211S211StcTtcA59124B.1.1.70.000053
ORF1ab/nsp2211S211StcTtcG4124B.1.1.70.000004
ORF1ab/nsp2211S211StcTtcG5152B.1.4270.002575
ORF1ab/nsp2211S211StcTtcC152B.1.4270.00005
ORF1ab/nsp2211S211StcTtcC4449AY.440.000268
ORF1ab/nsp2211S211StcTtcA449AY.440.000024
ORF1ab/nsp2211S211StcTtcG149AY.440.000006
ORF1ab/nsp2211S211StcTtcA2833AY.1180.001754
ORF1ab/nsp2211S211StcTtcC433AY.1180.000251
ORF1ab/nsp2211S211StcTtcG133AY.1180.000063
ORF1ab/nsp2211S211StcTtcC2433B.1.617.20.00009
ORF1ab/nsp2211S211StcTtcG933B.1.617.20.000034
ORF1ab/nsp2211S211StcTtcA1722B.1.10.000308
ORF1ab/nsp2211S211StcTtcC322B.1.10.000054
ORF1ab/nsp2211S211StcTtcG222B.1.10.000036
ORF1ab/nsp2211S211StcTtcG1318B.10.000119
ORF1ab/nsp2211S211StcTtcC418B.10.000037
ORF1ab/nsp2211S211StcTtcA118B.10.000009
ORF1ab/nsp2211S211StcTtcA1818B.1.177.770.013072
ORF1ab/nsp2211S211StcTtcC1717AY.470.000529
ORF1ab/nsp2211S211StcTtcG1717P.10.000268
ORF1ab/nsp2211S211StcTtcG1113B.1.360.001605
ORF1ab/nsp2211S211StcTtcC113B.1.360.000146
ORF1ab/nsp2211S211StcTtcA113B.1.360.000146
ORF1ab/nsp2211S211StcTtcG510AY.30.00005
ORF1ab/nsp2211S211StcTtcA410AY.30.00004
ORF1ab/nsp2211S211StcTtcC110AY.30.00001
ORF1ab/nsp2211S211StcTtcC88AY.250.000048
ORF1ab/nsp2211S211StcTtcC58AY.430.000022
ORF1ab/nsp2211S211StcTtcG38AY.430.000013
ORF1ab/nsp2211S211StcTtcG88B.1.1.390.004077
ORF1ab/nsp2211S211StcTtcC88B.1.1.4320.010127
ORF1ab/nsp2211S211StcTtcC78B.1.2210.000497
ORF1ab/nsp2211S211StcTtcA18B.1.2210.000071
ORF1ab/nsp2211S211StcTtcA66C.260.044118
ORF1ab/nsp2211S211StcTtcC56R.10.00045
ORF1ab/nsp2211S211StcTtcA16R.10.00009
ORF1ab/nsp2211S211StcTtcC55AY.98.10.000242
ORF1ab/nsp2211S211StcTtcC45B.1.5960.000349
ORF1ab/nsp2211S211StcTtcG15B.1.5960.000087
ORF1ab/nsp2211S211StcTtcC24AY.1030.000012
ORF1ab/nsp2211S211StcTtcG24AY.1030.000012
ORF1ab/nsp2211S211StcTtcC44AY.200.000155
ORF1ab/nsp2211S211StcTtcC44B.1.1770.000053
ORF1ab/nsp2211S211StcTtcC44B.1.36.180.001681
ORF1ab/nsp2211S211StcTtcC33AY.1200.000112
ORF1ab/nsp2211S211StcTtcG13AY.39.10.00004
ORF1ab/nsp2211S211StcTtcA13AY.39.10.00004
ORF1ab/nsp2211S211StcTtcC13AY.39.10.00004
ORF1ab/nsp2211S211StcTtcG33AY.840.001312
ORF1ab/nsp2211S211StcTtcC33AY.9.20.00011
ORF1ab/nsp2211S211StcTtcC22AY.1020.000053
ORF1ab/nsp2211S211StcTtcC22AY.610.00021
ORF1ab/nsp2211S211StcTtcG22B.1.1.2140.000111
ORF1ab/nsp2211S211StcTtcC22B.1.177.90.002663
ORF1ab/nsp2211S211StcTtcG22B.1.3110.000549
ORF1ab/nsp2211S211StcTtcA22B.1.5260.000047
ORF1ab/nsp2211S211StcTtcG22B.1.5720.05
ORF1ab/nsp2211S211StcTtcG22B.30.001661
ORF1ab/nsp2211S211StcTtcC11AY.1000.000046
ORF1ab/nsp2211S211StcTtcC11AY.140.000088
ORF1ab/nsp2211S211StcTtcC11AY.260.000028
ORF1ab/nsp2211S211StcTtcC11AY.290.000016
ORF1ab/nsp2211S211StcTtcC11AY.4.20.000022
ORF1ab/nsp2211S211StcTtcG11AY.420.00004
ORF1ab/nsp2211S211StcTtcG11AY.460.000104
ORF1ab/nsp2211S211StcTtcC11AY.520.000814
ORF1ab/nsp2211S211StcTtcC11AY.540.000095
ORF1ab/nsp2211S211StcTtcC11AY.660.00107
ORF1ab/nsp2211S211StcTtcC11AY.90.000068
ORF1ab/nsp2211S211StcTtcG11AY.920.000287
ORF1ab/nsp2211S211StcTtcC11AY.990.001049
ORF1ab/nsp2211S211StcTtcA11AY.99.20.000092
ORF1ab/nsp2211S211StcTtcC11B.1.1.2220.000204
ORF1ab/nsp2211S211StcTtcC11B.1.1.2270.004348
ORF1ab/nsp2211S211StcTtcC11B.1.1.2840.000107
ORF1ab/nsp2211S211StcTtcC11B.1.1.2980.000862
ORF1ab/nsp2211S211StcTtcA11B.1.1.4530.008475
ORF1ab/nsp2211S211StcTtcG11B.1.1.500.000679
ORF1ab/nsp2211S211StcTtcC11B.1.1.5190.00004
ORF1ab/nsp2211S211StcTtcC11B.1.177.160.000664
ORF1ab/nsp2211S211StcTtcC11B.1.2430.00007
ORF1ab/nsp2211S211StcTtcG11B.1.2580.000067
ORF1ab/nsp2211S211StcTtcC11B.1.351.30.000876
ORF1ab/nsp2211S211StcTtcA11B.1.4090.000781
ORF1ab/nsp2211S211StcTtcG11B.1.438.10.000107
ORF1ab/nsp2211S211StcTtcC11B.1.5250.000113
ORF1ab/nsp2211S211StcTtcG11D.20.000075
ORF1ab/nsp2211S211StcTtcA11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.