CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = S122F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2122S122FS302FnonsyntCttTt487248710.9997951169-1171
ORF1ab/nsp2122S122FS302FnonsyntCTtTC487210.0002052551169-1171

Details of the mutation S122F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2122S122FtCttTt48714872All0.000932
ORF1ab/nsp2122S122FtCTtTC14872All0
ORF1ab/nsp2122S122FtCttTt724724B.1.1.70.000648
ORF1ab/nsp2122S122FtCttTt462462AY.40.000719
ORF1ab/nsp2122S122FtCttTt299299AY.1060.100134
ORF1ab/nsp2122S122FtCttTt290290AY.440.001765
ORF1ab/nsp2122S122FtCttTt220220B.1.20.001937
ORF1ab/nsp2122S122FtCttTt201201B.1.360.029326
ORF1ab/nsp2122S122FtCttTt174174AY.430.000771
ORF1ab/nsp2122S122FtCttTt160160B.10.001466
ORF1ab/nsp2122S122FtCttTt157157B.1.1.10.05129
ORF1ab/nsp2122S122FtCttTt134134B.1.617.20.000505
ORF1ab/nsp2122S122FtCttTt113113B.1.10.00205
ORF1ab/nsp2122S122FtCttTt106106B.1.1770.001396
ORF1ab/nsp2122S122FtCttTt103103AY.1030.00064
ORF1ab/nsp2122S122FtCttTt9797AY.4.20.002104
ORF1ab/nsp2122S122FtCttTt9292AY.250.000553
ORF1ab/nsp2122S122FtCttTt8989AY.30.000885
ORF1ab/nsp2122S122FtCttTt8989AY.420.00358
ORF1ab/nsp2122S122FtCttTt6464P.10.001008
ORF1ab/nsp2122S122FtCttTt4848AY.240.02069
ORF1ab/nsp2122S122FtCttTt4848AY.5.30.016194
ORF1ab/nsp2122S122FtCttTt4646AY.360.006818
ORF1ab/nsp2122S122FtCttTt4545B.1.258.170.004679
ORF1ab/nsp2122S122FtCttTt4242B.1.5260.000987
ORF1ab/nsp2122S122FtCttTt4242B.1.5750.012743
ORF1ab/nsp2122S122FtCttTt3232AY.50.000661
ORF1ab/nsp2122S122FtCttTt2727AY.1020.000716
ORF1ab/nsp2122S122FtCttTt2727AY.9.10.002261
ORF1ab/nsp2122S122FtCttTt2525B.1.80.04931
ORF1ab/nsp2122S122FtCttTt2323AY.99.20.00212
ORF1ab/nsp2122S122FtCttTt2222AY.390.000544
ORF1ab/nsp2122S122FtCttTt2222B.1.1.500.014936
ORF1ab/nsp2122S122FtCttTt2222B.1.2580.001464
ORF1ab/nsp2122S122FtCttTt2020AY.260.000566
ORF1ab/nsp2122S122FtCttTt2020B.1.1600.000624
ORF1ab/nsp2122S122FtCttTt1919AY.290.0003
ORF1ab/nsp2122S122FtCttTt1818B.1.2210.001279
ORF1ab/nsp2122S122FtCttTt1818B.1.3200.022416
ORF1ab/nsp2122S122FtCttTt1717AY.200.000661
ORF1ab/nsp2122S122FtCttTt1717AY.230.001186
ORF1ab/nsp2122S122FtCttTt1717B.1.5960.001481
ORF1ab/nsp2122S122FtCttTt1616AY.9.20.000588
ORF1ab/nsp2122S122FtCttTt1616B.1.4290.000376
ORF1ab/nsp2122S122FtCttTt1515AY.98.10.000726
ORF1ab/nsp2122S122FtCttTt1414AY.39.1.10.010145
ORF1ab/nsp2122S122FtCttTt1414B.1.3510.000416
ORF1ab/nsp2122S122FtCttTt1414B.1.466.20.005477
ORF1ab/nsp2122S122FtCttTt1414B.1.5950.003653
ORF1ab/nsp2122S122FtCttTt1313B.1.1.5190.000516
ORF1ab/nsp2122S122FtCttTt1313B.1.177.80.009782
ORF1ab/nsp2122S122FtCttTt1212AY.350.002797
ORF1ab/nsp2122S122FtCttTt1212AY.470.000373
ORF1ab/nsp2122S122FtCttTt1212B.1.438.10.001287
ORF1ab/nsp2122S122FtCttTt1212P.1.140.000574
ORF1ab/nsp2122S122FtCttTt1111AY.1200.000409
ORF1ab/nsp2122S122FtCttTt1111B.1.1.4860.01735
ORF1ab/nsp2122S122FtCttTt1111B.1.6370.000804
ORF1ab/nsp2122S122FtCttTt1010AY.1000.00046
ORF1ab/nsp2122S122FtCttTt1010AY.1130.001424
ORF1ab/nsp2122S122FtCttTt1010AY.5.40.002767
ORF1ab/nsp2122S122FtCttTt1010B.1.36.220.012077
ORF1ab/nsp2122S122FtCttTt99B.1.4560.029412
ORF1ab/nsp2122S122FtCttTt88AY.330.000534
ORF1ab/nsp2122S122FtCttTt88AY.620.003486
ORF1ab/nsp2122S122FtCttTt88B.1.1.4170.021622
ORF1ab/nsp2122S122FtCttTt88B.1.4250.023952
ORF1ab/nsp2122S122FtCttTt88B.1.4270.000404
ORF1ab/nsp2122S122FtCttTt77B.1.177.600.001529
ORF1ab/nsp2122S122FtCttTt77B.1.36.160.009972
ORF1ab/nsp2122S122FtCttTt77B.1.36.80.007
ORF1ab/nsp2122S122FtCttTt66AY.1190.000212
ORF1ab/nsp2122S122FtCttTt66AY.560.009631
ORF1ab/nsp2122S122FtCttTt66AY.750.000336
ORF1ab/nsp2122S122FtCttTt66B.1.1.2970.013423
ORF1ab/nsp2122S122FtCttTt66B.1.2430.000418
ORF1ab/nsp2122S122FtCttTt55AY.520.004072
ORF1ab/nsp2122S122FtCttTt45AY.980.000316
ORF1ab/nsp2122S122FtCTtTC15AY.980.000079
ORF1ab/nsp2122S122FtCttTt55B0.000639
ORF1ab/nsp2122S122FtCttTt55B.1.110.30.003592
ORF1ab/nsp2122S122FtCttTt55B.1.177.540.003032
ORF1ab/nsp2122S122FtCttTt55B.1.2340.00066
ORF1ab/nsp2122S122FtCttTt55B.1.3560.008636
ORF1ab/nsp2122S122FtCttTt55B.1.6210.000443
ORF1ab/nsp2122S122FtCttTt55P.1.120.00242
ORF1ab/nsp2122S122FtCttTt44AU.10.005063
ORF1ab/nsp2122S122FtCttTt44AY.1170.000338
ORF1ab/nsp2122S122FtCttTt44AY.130.000644
ORF1ab/nsp2122S122FtCttTt44AY.39.10.000158
ORF1ab/nsp2122S122FtCttTt44AY.460.000416
ORF1ab/nsp2122S122FtCttTt44AY.610.000419
ORF1ab/nsp2122S122FtCttTt44B.1.1.3370.014388
ORF1ab/nsp2122S122FtCttTt44B.1.177.250.059701
ORF1ab/nsp2122S122FtCttTt44B.1.177.570.001124
ORF1ab/nsp2122S122FtCttTt44B.1.177.730.002265
ORF1ab/nsp2122S122FtCttTt44B.1.2400.000862
ORF1ab/nsp2122S122FtCttTt44B.1.5240.005626
ORF1ab/nsp2122S122FtCttTt44P.1.60.007782
ORF1ab/nsp2122S122FtCttTt44P.1.70.001277
ORF1ab/nsp2122S122FtCttTt33A0.001161
ORF1ab/nsp2122S122FtCttTt33AY.16.10.00141
ORF1ab/nsp2122S122FtCttTt33AY.380.001498
ORF1ab/nsp2122S122FtCttTt33AY.4.2.10.000447
ORF1ab/nsp2122S122FtCttTt33AY.540.000286
ORF1ab/nsp2122S122FtCttTt33AY.730.001996
ORF1ab/nsp2122S122FtCttTt33B.1.1.2220.000612
ORF1ab/nsp2122S122FtCttTt33B.1.1.280.000934
ORF1ab/nsp2122S122FtCttTt33B.1.1.3060.001315
ORF1ab/nsp2122S122FtCttTt33B.1.1.330.001263
ORF1ab/nsp2122S122FtCttTt33B.1.214.20.001799
ORF1ab/nsp2122S122FtCttTt33B.1.3290.001823
ORF1ab/nsp2122S122FtCttTt33B.1.3490.002144
ORF1ab/nsp2122S122FtCttTt33B.1.3690.000856
ORF1ab/nsp2122S122FtCttTt33B.1.3950.021127
ORF1ab/nsp2122S122FtCttTt33B.1.4700.004213
ORF1ab/nsp2122S122FtCttTt33B.1.617.10.000387
ORF1ab/nsp2122S122FtCttTt33C.370.000348
ORF1ab/nsp2122S122FtCttTt33R.10.00027
ORF1ab/nsp2122S122FtCttTt22A.20.001324
ORF1ab/nsp2122S122FtCttTt22A.2.50.000998
ORF1ab/nsp2122S122FtCttTt22AY.1180.000125
ORF1ab/nsp2122S122FtCttTt22AY.270.000129
ORF1ab/nsp2122S122FtCttTt22AY.3.10.000171
ORF1ab/nsp2122S122FtCttTt22AY.4.50.000215
ORF1ab/nsp2122S122FtCttTt22AY.46.20.001271
ORF1ab/nsp2122S122FtCttTt22AY.46.60.000144
ORF1ab/nsp2122S122FtCttTt22AY.550.001835
ORF1ab/nsp2122S122FtCttTt22AY.60.000082
ORF1ab/nsp2122S122FtCttTt22AY.680.000547
ORF1ab/nsp2122S122FtCttTt22AY.710.00095
ORF1ab/nsp2122S122FtCttTt22AY.860.00166
ORF1ab/nsp2122S122FtCttTt22B.1.1.100.00223
ORF1ab/nsp2122S122FtCttTt22B.1.1.250.001137
ORF1ab/nsp2122S122FtCttTt22B.1.1.3010.002358
ORF1ab/nsp2122S122FtCttTt22B.1.1.3180.000604
ORF1ab/nsp2122S122FtCttTt22B.1.1060.0625
ORF1ab/nsp2122S122FtCttTt22B.1.177.160.001329
ORF1ab/nsp2122S122FtCttTt22B.1.177.310.022989
ORF1ab/nsp2122S122FtCttTt22B.1.177.520.003515
ORF1ab/nsp2122S122FtCttTt22B.1.351.30.001753
ORF1ab/nsp2122S122FtCttTt22B.1.36.170.000988
ORF1ab/nsp2122S122FtCttTt22B.1.3980.005952
ORF1ab/nsp2122S122FtCttTt22B.1.4000.000858
ORF1ab/nsp2122S122FtCttTt22B.1.4030.006536
ORF1ab/nsp2122S122FtCttTt22B.1.4590.008163
ORF1ab/nsp2122S122FtCttTt22B.1.4680.011429
ORF1ab/nsp2122S122FtCttTt22B.1.6090.000959
ORF1ab/nsp2122S122FtCttTt22B.610.011494
ORF1ab/nsp2122S122FtCttTt22C.360.001821
ORF1ab/nsp2122S122FtCttTt22P.1.150.000465
ORF1ab/nsp2122S122FtCttTt22P.20.000373
ORF1ab/nsp2122S122FtCttTt22P.40.007605
ORF1ab/nsp2122S122FtCttTt22Q.10.000253
ORF1ab/nsp2122S122FtCttTt11A.2.5.30.010309
ORF1ab/nsp2122S122FtCttTt11A.23.10.000704
ORF1ab/nsp2122S122FtCttTt11AE.80.000489
ORF1ab/nsp2122S122FtCttTt11AY.1050.000643
ORF1ab/nsp2122S122FtCttTt11AY.1110.000183
ORF1ab/nsp2122S122FtCttTt11AY.1160.000287
ORF1ab/nsp2122S122FtCttTt11AY.140.000088
ORF1ab/nsp2122S122FtCttTt11AY.190.00114
ORF1ab/nsp2122S122FtCttTt11AY.340.000097
ORF1ab/nsp2122S122FtCttTt11AY.370.000316
ORF1ab/nsp2122S122FtCttTt11AY.46.10.001027
ORF1ab/nsp2122S122FtCttTt11AY.46.40.000165
ORF1ab/nsp2122S122FtCttTt11AY.480.000465
ORF1ab/nsp2122S122FtCttTt11AY.580.000907
ORF1ab/nsp2122S122FtCttTt11AY.650.000533
ORF1ab/nsp2122S122FtCttTt11AY.670.000464
ORF1ab/nsp2122S122FtCttTt11AY.690.000187
ORF1ab/nsp2122S122FtCttTt11AY.740.000116
ORF1ab/nsp2122S122FtCttTt11AY.75.10.00018
ORF1ab/nsp2122S122FtCttTt11AY.80.000606
ORF1ab/nsp2122S122FtCttTt11AY.840.000437
ORF1ab/nsp2122S122FtCttTt11AY.850.000427
ORF1ab/nsp2122S122FtCttTt11AY.90.000068
ORF1ab/nsp2122S122FtCttTt11AY.920.000287
ORF1ab/nsp2122S122FtCttTt11AY.940.000443
ORF1ab/nsp2122S122FtCttTt11B.1.1.1170.009709
ORF1ab/nsp2122S122FtCttTt11B.1.1.1480.008772
ORF1ab/nsp2122S122FtCttTt11B.1.1.1570.000913
ORF1ab/nsp2122S122FtCttTt11B.1.1.1760.000439
ORF1ab/nsp2122S122FtCttTt11B.1.1.1980.001468
ORF1ab/nsp2122S122FtCttTt11B.1.1.2140.000055
ORF1ab/nsp2122S122FtCttTt11B.1.1.2200.001859
ORF1ab/nsp2122S122FtCttTt11B.1.1.2650.003155
ORF1ab/nsp2122S122FtCttTt11B.1.1.2800.003086
ORF1ab/nsp2122S122FtCttTt11B.1.1.2840.000107
ORF1ab/nsp2122S122FtCttTt11B.1.1.2890.002083
ORF1ab/nsp2122S122FtCttTt11B.1.1.2940.001266
ORF1ab/nsp2122S122FtCttTt11B.1.1.310.066667
ORF1ab/nsp2122S122FtCttTt11B.1.1.3170.000412
ORF1ab/nsp2122S122FtCttTt11B.1.1.3220.008772
ORF1ab/nsp2122S122FtCttTt11B.1.1.3260.001761
ORF1ab/nsp2122S122FtCttTt11B.1.1.3740.002375
ORF1ab/nsp2122S122FtCttTt11B.1.1.390.00051
ORF1ab/nsp2122S122FtCttTt11B.1.1.3970.002252
ORF1ab/nsp2122S122FtCttTt11B.1.1.5170.006803
ORF1ab/nsp2122S122FtCttTt11B.1.1.5250.005464
ORF1ab/nsp2122S122FtCttTt11B.1.1.5260.003546
ORF1ab/nsp2122S122FtCttTt11B.1.1.630.000386
ORF1ab/nsp2122S122FtCttTt11B.1.1.740.00431
ORF1ab/nsp2122S122FtCttTt11B.1.160.160.000929
ORF1ab/nsp2122S122FtCttTt11B.1.160.310.008065
ORF1ab/nsp2122S122FtCttTt11B.1.177.100.000878
ORF1ab/nsp2122S122FtCttTt11B.1.177.120.000152
ORF1ab/nsp2122S122FtCttTt11B.1.177.20.004545
ORF1ab/nsp2122S122FtCttTt11B.1.177.350.000691
ORF1ab/nsp2122S122FtCttTt11B.1.177.60.000977
ORF1ab/nsp2122S122FtCttTt11B.1.177.630.002703
ORF1ab/nsp2122S122FtCttTt11B.1.177.650.000665
ORF1ab/nsp2122S122FtCttTt11B.1.177.810.000189
ORF1ab/nsp2122S122FtCttTt11B.1.177.90.001332
ORF1ab/nsp2122S122FtCttTt11B.1.214.30.007143
ORF1ab/nsp2122S122FtCttTt11B.1.2240.025
ORF1ab/nsp2122S122FtCttTt11B.1.2370.004975
ORF1ab/nsp2122S122FtCttTt11B.1.2390.001221
ORF1ab/nsp2122S122FtCttTt11B.1.2470.014925
ORF1ab/nsp2122S122FtCttTt11B.1.258.110.000396
ORF1ab/nsp2122S122FtCttTt11B.1.3110.000275
ORF1ab/nsp2122S122FtCttTt11B.1.3360.002439
ORF1ab/nsp2122S122FtCttTt11B.1.3380.008621
ORF1ab/nsp2122S122FtCttTt11B.1.351.20.000303
ORF1ab/nsp2122S122FtCttTt11B.1.36.100.004785
ORF1ab/nsp2122S122FtCttTt11B.1.36.260.002857
ORF1ab/nsp2122S122FtCttTt11B.1.36.290.000517
ORF1ab/nsp2122S122FtCttTt11B.1.36.360.000602
ORF1ab/nsp2122S122FtCttTt11B.1.3670.000792
ORF1ab/nsp2122S122FtCttTt11B.1.3790.017241
ORF1ab/nsp2122S122FtCttTt11B.1.3960.000706
ORF1ab/nsp2122S122FtCttTt11B.1.4040.001302
ORF1ab/nsp2122S122FtCttTt11B.1.416.10.001563
ORF1ab/nsp2122S122FtCttTt11B.1.4360.001029
ORF1ab/nsp2122S122FtCttTt11B.1.440.008333
ORF1ab/nsp2122S122FtCttTt11B.1.4420.035714
ORF1ab/nsp2122S122FtCttTt11B.1.4530.003236
ORF1ab/nsp2122S122FtCttTt11B.1.4690.00361
ORF1ab/nsp2122S122FtCttTt11B.1.5250.000113
ORF1ab/nsp2122S122FtCttTt11B.1.5330.009615
ORF1ab/nsp2122S122FtCttTt11B.1.5460.003704
ORF1ab/nsp2122S122FtCttTt11B.1.5560.007519
ORF1ab/nsp2122S122FtCttTt11B.1.5700.002941
ORF1ab/nsp2122S122FtCttTt11B.1.5760.000907
ORF1ab/nsp2122S122FtCttTt11B.1.5820.000491
ORF1ab/nsp2122S122FtCttTt11B.1.6120.002653
ORF1ab/nsp2122S122FtCttTt11B.1.6250.002353
ORF1ab/nsp2122S122FtCttTt11B.1.6280.000352
ORF1ab/nsp2122S122FtCttTt11B.1.6290.013333
ORF1ab/nsp2122S122FtCttTt11B.4.60.016667
ORF1ab/nsp2122S122FtCttTt11D.20.000075
ORF1ab/nsp2122S122FtCttTt11P.1.170.000162
ORF1ab/nsp2122S122FtCttTt11Q.30.000145
ORF1ab/nsp2122S122FtCttTt11Q.40.000455
ORF1ab/nsp2122S122FtCttTt11Q.80.000165
ORF1ab/nsp2122S122FtCttTt11U.10.012821
ORF1ab/nsp2122S122FtCttTt11W.10.008696

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.