CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = R4C

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp24R4CR184CnonsynCgcTgc587258700.999659815-817
ORF1ab/nsp24R4CR184CnonsynCgCTgT587220.000340599815-817

Details of the mutation R4C within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp24R4CCgcTgc58705872All0.001123
ORF1ab/nsp24R4CCgCTgT25872All0
ORF1ab/nsp24R4CCgcTgc13721372B.1.1.70.001228
ORF1ab/nsp24R4CCgcTgc978978AY.40.001522
ORF1ab/nsp24R4CCgcTgc407407B.1.617.20.001533
ORF1ab/nsp24R4CCgcTgc278278AY.440.001692
ORF1ab/nsp24R4CCgcTgc165165AY.430.000731
ORF1ab/nsp24R4CCgcTgc163163AY.1020.004322
ORF1ab/nsp24R4CCgcTgc129129B.1.1.2250.928058
ORF1ab/nsp24R4CCgcTgc113113AY.340.010957
ORF1ab/nsp24R4CCgcTgc110110B.1.1770.001448
ORF1ab/nsp24R4CCgcTgc8989AY.1030.000553
ORF1ab/nsp24R4CCgcTgc8989AY.140.007833
ORF1ab/nsp24R4CCgcTgc8585AY.50.001755
ORF1ab/nsp24R4CCgcTgc7777B.1.10.001397
ORF1ab/nsp24R4CCgcTgc7171B.1.6290.946667
ORF1ab/nsp24R4CCgcTgc7070AY.390.00173
ORF1ab/nsp24R4CCgcTgc7070B.1.177.40.014774
ORF1ab/nsp24R4CCgcTgc7070B.1.5250.007921
ORF1ab/nsp24R4CCgcTgc6464AY.30.000637
ORF1ab/nsp24R4CCgcTgc6464B.1.5960.005577
ORF1ab/nsp24R4CCgcTgc6262B.10.000568
ORF1ab/nsp24R4CCgcTgc5455AY.250.000325
ORF1ab/nsp24R4CCgCTgT155AY.250.000006
ORF1ab/nsp24R4CCgcTgc5252B.1.1.2140.002884
ORF1ab/nsp24R4CCgcTgc5050AY.9.20.001836
ORF1ab/nsp24R4CCgcTgc5050P.10.000788
ORF1ab/nsp24R4CCgcTgc4040B.1.1600.001248
ORF1ab/nsp24R4CCgcTgc3737AY.120.2.10.018435
ORF1ab/nsp24R4CCgcTgc3737B.1.177.120.005613
ORF1ab/nsp24R4CCgcTgc3737B.1.20.000326
ORF1ab/nsp24R4CCgcTgc3131B.1.2400.006682
ORF1ab/nsp24R4CCgcTgc2929B.1.1.5190.001152
ORF1ab/nsp24R4CCgcTgc2626AY.260.000736
ORF1ab/nsp24R4CCgcTgc2626AY.470.000809
ORF1ab/nsp24R4CCgcTgc2424AY.330.001603
ORF1ab/nsp24R4CCgcTgc2222AY.1190.000777
ORF1ab/nsp24R4CCgcTgc2121AY.200.000816
ORF1ab/nsp24R4CCgcTgc2121B.1.2210.001492
ORF1ab/nsp24R4CCgcTgc1919B.1.5260.000447
ORF1ab/nsp24R4CCgcTgc1818AY.290.000284
ORF1ab/nsp24R4CCgcTgc1818AY.98.10.000872
ORF1ab/nsp24R4CCgcTgc1717B.1.6210.001505
ORF1ab/nsp24R4CCgcTgc1616AY.1210.002165
ORF1ab/nsp24R4CCgcTgc1616B.1.177.600.003495
ORF1ab/nsp24R4CCgcTgc1515B.1.6090.007191
ORF1ab/nsp24R4CCgcTgc1414AY.1070.006524
ORF1ab/nsp24R4CCgcTgc1414B.1.3510.000416
ORF1ab/nsp24R4CCgcTgc1313AY.420.000523
ORF1ab/nsp24R4CCgcTgc1313B.1.177.210.000994
ORF1ab/nsp24R4CCgcTgc1212AY.1200.000446
ORF1ab/nsp24R4CCgcTgc1212AY.39.10.000475
ORF1ab/nsp24R4CCgcTgc1111AY.4.20.000239
ORF1ab/nsp24R4CCgcTgc1111AY.460.001145
ORF1ab/nsp24R4CCgcTgc1111B.1.4290.000259
ORF1ab/nsp24R4CCgcTgc1010AY.1180.000626
ORF1ab/nsp24R4CCgcTgc1010AY.360.001482
ORF1ab/nsp24R4CCgcTgc1010AY.690.001867
ORF1ab/nsp24R4CCgcTgc1010AY.980.00079
ORF1ab/nsp24R4CCgcTgc1010B.1.177.150.006309
ORF1ab/nsp24R4CCgcTgc99AY.1170.000761
ORF1ab/nsp24R4CCgcTgc99AY.270.000582
ORF1ab/nsp24R4CCgcTgc99AY.7.10.001014
ORF1ab/nsp24R4CCgcTgc99AY.99.20.000829
ORF1ab/nsp24R4CCgcTgc99B.1.177.830.013333
ORF1ab/nsp24R4CCgcTgc88AY.3.10.000682
ORF1ab/nsp24R4CCgcTgc88AY.450.000973
ORF1ab/nsp24R4CCgcTgc88AY.9.10.00067
ORF1ab/nsp24R4CCgcTgc88Q.30.00116
ORF1ab/nsp24R4CCgcTgc77AY.1000.000322
ORF1ab/nsp24R4CCgcTgc77AY.1050.004502
ORF1ab/nsp24R4CCgcTgc77B.1.2320.003761
ORF1ab/nsp24R4CCgcTgc66AY.1110.001099
ORF1ab/nsp24R4CCgcTgc66AY.400.005786
ORF1ab/nsp24R4CCgcTgc66AY.60.000247
ORF1ab/nsp24R4CCgcTgc66B0.000767
ORF1ab/nsp24R4CCgcTgc66B.1.2580.000399
ORF1ab/nsp24R4CCgcTgc66B.1.258.170.000624
ORF1ab/nsp24R4CCgcTgc66P.1.70.001916
ORF1ab/nsp24R4CCgcTgc55AY.230.000349
ORF1ab/nsp24R4CCgcTgc55AY.540.000477
ORF1ab/nsp24R4CCgcTgc55AY.640.002976
ORF1ab/nsp24R4CCgcTgc55AY.670.002321
ORF1ab/nsp24R4CCgcTgc55AY.820.006784
ORF1ab/nsp24R4CCgcTgc55B.1.1.2170.018182
ORF1ab/nsp24R4CCgcTgc55B.1.1.3110.001791
ORF1ab/nsp24R4CCgcTgc55B.1.1.5170.034014
ORF1ab/nsp24R4CCgcTgc55B.1.177.670.038168
ORF1ab/nsp24R4CCgcTgc55B.1.2340.00066
ORF1ab/nsp24R4CCgcTgc55B.1.3960.003529
ORF1ab/nsp24R4CCgcTgc55P.1.140.000239
ORF1ab/nsp24R4CCgcTgc44AY.1060.00134
ORF1ab/nsp24R4CCgcTgc44AY.4.10.00295
ORF1ab/nsp24R4CCgcTgc44AY.740.000463
ORF1ab/nsp24R4CCgcTgc44AY.840.00175
ORF1ab/nsp24R4CCgcTgc44AY.920.001149
ORF1ab/nsp24R4CCgcTgc44B.1.1.2280.012195
ORF1ab/nsp24R4CCgcTgc44B.1.1.3720.002755
ORF1ab/nsp24R4CCgcTgc44B.1.1.500.002716
ORF1ab/nsp24R4CCgcTgc44B.1.177.500.018779
ORF1ab/nsp24R4CCgcTgc44B.1.2430.000278
ORF1ab/nsp24R4CCgcTgc44B.1.360.000584
ORF1ab/nsp24R4CCgcTgc44B.1.466.20.001565
ORF1ab/nsp24R4CCgcTgc44B.40.00883
ORF1ab/nsp24R4CCgcTgc44Q.10.000505
ORF1ab/nsp24R4CCgcTgc33AY.130.000483
ORF1ab/nsp24R4CCgcTgc33AY.29.10.000662
ORF1ab/nsp24R4CCgcTgc33AY.46.40.000494
ORF1ab/nsp24R4CCgcTgc33AY.610.000314
ORF1ab/nsp24R4CCgcTgc33AY.850.001282
ORF1ab/nsp24R4CCgcTgc33AY.880.002653
ORF1ab/nsp24R4CCgcTgc33B.1.1.1980.004405
ORF1ab/nsp24R4CCgcTgc33B.1.1.2370.016216
ORF1ab/nsp24R4CCgcTgc33B.1.1.3690.001339
ORF1ab/nsp24R4CCgcTgc33B.1.1.4290.013825
ORF1ab/nsp24R4CCgcTgc33B.1.2060.002447
ORF1ab/nsp24R4CCgcTgc33B.1.5170.001281
ORF1ab/nsp24R4CCgcTgc33D.20.000225
ORF1ab/nsp24R4CCgcTgc33Q.40.001364
ORF1ab/nsp24R4CCgcTgc33R.10.00027
ORF1ab/nsp24R4CCgcTgc120.055556
ORF1ab/nsp24R4CCgCTgT120.055556
ORF1ab/nsp24R4CCgcTgc22A.2.5.10.009615
ORF1ab/nsp24R4CCgcTgc22AW.10.006098
ORF1ab/nsp24R4CCgcTgc22AY.1160.000574
ORF1ab/nsp24R4CCgcTgc22AY.120.000632
ORF1ab/nsp24R4CCgcTgc22AY.16.10.00094
ORF1ab/nsp24R4CCgcTgc22AY.34.10.00102
ORF1ab/nsp24R4CCgcTgc22AY.370.000632
ORF1ab/nsp24R4CCgcTgc22AY.4.50.000215
ORF1ab/nsp24R4CCgcTgc22AY.46.60.000144
ORF1ab/nsp24R4CCgcTgc22AY.550.001835
ORF1ab/nsp24R4CCgcTgc22AY.590.001059
ORF1ab/nsp24R4CCgcTgc22AY.70.000392
ORF1ab/nsp24R4CCgcTgc22B.1.1.10.000653
ORF1ab/nsp24R4CCgcTgc22B.1.1.2160.001781
ORF1ab/nsp24R4CCgcTgc22B.1.1.2220.000408
ORF1ab/nsp24R4CCgcTgc22B.1.1.2700.020619
ORF1ab/nsp24R4CCgcTgc22B.1.1.3060.000877
ORF1ab/nsp24R4CCgcTgc22B.1.1.4090.005666
ORF1ab/nsp24R4CCgcTgc22B.1.1.4160.00181
ORF1ab/nsp24R4CCgcTgc22B.1.1.540.006042
ORF1ab/nsp24R4CCgcTgc22B.1.1.570.022989
ORF1ab/nsp24R4CCgcTgc22B.1.1.700.000682
ORF1ab/nsp24R4CCgcTgc22B.1.177.440.001038
ORF1ab/nsp24R4CCgcTgc22B.1.177.540.001213
ORF1ab/nsp24R4CCgcTgc22B.1.177.570.000562
ORF1ab/nsp24R4CCgcTgc22B.1.177.70.00033
ORF1ab/nsp24R4CCgcTgc22B.1.36.10.002281
ORF1ab/nsp24R4CCgcTgc22B.1.36.170.000988
ORF1ab/nsp24R4CCgcTgc22B.1.36.180.00084
ORF1ab/nsp24R4CCgcTgc22B.1.36.290.001035
ORF1ab/nsp24R4CCgcTgc22B.1.3890.002004
ORF1ab/nsp24R4CCgcTgc22B.1.4040.002604
ORF1ab/nsp24R4CCgcTgc22B.1.5880.00182
ORF1ab/nsp24R4CCgcTgc22B.1.617.10.000258
ORF1ab/nsp24R4CCgcTgc22B.1.6190.001742
ORF1ab/nsp24R4CCgcTgc22B.1.6370.000146
ORF1ab/nsp24R4CCgcTgc22B.6.30.052632
ORF1ab/nsp24R4CCgcTgc22B.6.60.001778
ORF1ab/nsp24R4CCgcTgc22P.20.000373
ORF1ab/nsp24R4CCgcTgc22Q.80.00033
ORF1ab/nsp24R4CCgcTgc11A.20.000662
ORF1ab/nsp24R4CCgcTgc11A.2.50.000499
ORF1ab/nsp24R4CCgcTgc11A.270.001656
ORF1ab/nsp24R4CCgcTgc11AM.40.003571
ORF1ab/nsp24R4CCgcTgc11AU.20.002421
ORF1ab/nsp24R4CCgcTgc11AY.10.000396
ORF1ab/nsp24R4CCgcTgc11AY.1010.00049
ORF1ab/nsp24R4CCgcTgc11AY.1080.001103
ORF1ab/nsp24R4CCgcTgc11AY.1090.00074
ORF1ab/nsp24R4CCgcTgc11AY.1100.000113
ORF1ab/nsp24R4CCgcTgc11AY.1130.000142
ORF1ab/nsp24R4CCgcTgc11AY.1140.000231
ORF1ab/nsp24R4CCgcTgc11AY.116.10.000311
ORF1ab/nsp24R4CCgcTgc11AY.160.00038
ORF1ab/nsp24R4CCgcTgc11AY.220.002092
ORF1ab/nsp24R4CCgcTgc11AY.240.000431
ORF1ab/nsp24R4CCgcTgc11AY.300.000396
ORF1ab/nsp24R4CCgcTgc11AY.320.000532
ORF1ab/nsp24R4CCgcTgc11AY.380.000499
ORF1ab/nsp24R4CCgcTgc11AY.4.2.10.000149
ORF1ab/nsp24R4CCgcTgc11AY.4.40.000409
ORF1ab/nsp24R4CCgcTgc11AY.46.20.000635
ORF1ab/nsp24R4CCgcTgc11AY.46.50.000198
ORF1ab/nsp24R4CCgcTgc11AY.480.000465
ORF1ab/nsp24R4CCgcTgc11AY.5.30.000337
ORF1ab/nsp24R4CCgcTgc11AY.530.000288
ORF1ab/nsp24R4CCgcTgc11AY.570.000656
ORF1ab/nsp24R4CCgcTgc11AY.620.000436
ORF1ab/nsp24R4CCgcTgc11AY.650.000533
ORF1ab/nsp24R4CCgcTgc11AY.700.000209
ORF1ab/nsp24R4CCgcTgc11AY.750.000056
ORF1ab/nsp24R4CCgcTgc11AY.75.10.00018
ORF1ab/nsp24R4CCgcTgc11AY.780.001541
ORF1ab/nsp24R4CCgcTgc11AY.830.001724
ORF1ab/nsp24R4CCgcTgc11AY.90.000068
ORF1ab/nsp24R4CCgcTgc11AY.910.00073
ORF1ab/nsp24R4CCgcTgc11AY.990.001049
ORF1ab/nsp24R4CCgcTgc11B.1.1.100.001115
ORF1ab/nsp24R4CCgcTgc11B.1.1.1410.002012
ORF1ab/nsp24R4CCgcTgc11B.1.1.1530.001095
ORF1ab/nsp24R4CCgcTgc11B.1.1.1550.071429
ORF1ab/nsp24R4CCgcTgc11B.1.1.1590.004673
ORF1ab/nsp24R4CCgcTgc11B.1.1.1700.001247
ORF1ab/nsp24R4CCgcTgc11B.1.1.1740.003378
ORF1ab/nsp24R4CCgcTgc11B.1.1.1760.000439
ORF1ab/nsp24R4CCgcTgc11B.1.1.2000.007463
ORF1ab/nsp24R4CCgcTgc11B.1.1.2070.001182
ORF1ab/nsp24R4CCgcTgc11B.1.1.2410.00207
ORF1ab/nsp24R4CCgcTgc11B.1.1.2530.002506
ORF1ab/nsp24R4CCgcTgc11B.1.1.2650.003155
ORF1ab/nsp24R4CCgcTgc11B.1.1.2740.005051
ORF1ab/nsp24R4CCgcTgc11B.1.1.280.000311
ORF1ab/nsp24R4CCgcTgc11B.1.1.2840.000107
ORF1ab/nsp24R4CCgcTgc11B.1.1.3050.003861
ORF1ab/nsp24R4CCgcTgc11B.1.1.3170.000412
ORF1ab/nsp24R4CCgcTgc11B.1.1.3220.008772
ORF1ab/nsp24R4CCgcTgc11B.1.1.3260.001761
ORF1ab/nsp24R4CCgcTgc11B.1.1.330.000421
ORF1ab/nsp24R4CCgcTgc11B.1.1.370.000193
ORF1ab/nsp24R4CCgcTgc11B.1.1.390.00051
ORF1ab/nsp24R4CCgcTgc11B.1.1.4110.014706
ORF1ab/nsp24R4CCgcTgc11B.1.1.4120.007634
ORF1ab/nsp24R4CCgcTgc11B.1.1.4640.001473
ORF1ab/nsp24R4CCgcTgc11B.1.1.510.001718
ORF1ab/nsp24R4CCgcTgc11B.1.1.5210.005348
ORF1ab/nsp24R4CCgcTgc11B.1.1.630.000386
ORF1ab/nsp24R4CCgcTgc11B.1.1.740.00431
ORF1ab/nsp24R4CCgcTgc11B.1.110.30.000718
ORF1ab/nsp24R4CCgcTgc11B.1.1110.001175
ORF1ab/nsp24R4CCgcTgc11B.1.1490.003425
ORF1ab/nsp24R4CCgcTgc11B.1.1530.018868
ORF1ab/nsp24R4CCgcTgc11B.1.160.160.000929
ORF1ab/nsp24R4CCgcTgc11B.1.177.100.000878
ORF1ab/nsp24R4CCgcTgc11B.1.177.170.000821
ORF1ab/nsp24R4CCgcTgc11B.1.177.410.0025
ORF1ab/nsp24R4CCgcTgc11B.1.177.430.001477
ORF1ab/nsp24R4CCgcTgc11B.1.177.50.001242
ORF1ab/nsp24R4CCgcTgc11B.1.177.520.001757
ORF1ab/nsp24R4CCgcTgc11B.1.177.770.000726
ORF1ab/nsp24R4CCgcTgc11B.1.177.790.002342
ORF1ab/nsp24R4CCgcTgc11B.1.177.810.000189
ORF1ab/nsp24R4CCgcTgc11B.1.177.850.005435
ORF1ab/nsp24R4CCgcTgc11B.1.1920.009259
ORF1ab/nsp24R4CCgcTgc11B.1.214.20.0006
ORF1ab/nsp24R4CCgcTgc11B.1.2180.005155
ORF1ab/nsp24R4CCgcTgc11B.1.221.10.002907
ORF1ab/nsp24R4CCgcTgc11B.1.2270.047619
ORF1ab/nsp24R4CCgcTgc11B.1.2390.001221
ORF1ab/nsp24R4CCgcTgc11B.1.2410.000812
ORF1ab/nsp24R4CCgcTgc11B.1.258.140.00098
ORF1ab/nsp24R4CCgcTgc11B.1.3110.000275
ORF1ab/nsp24R4CCgcTgc11B.1.3200.001245
ORF1ab/nsp24R4CCgcTgc11B.1.3360.002439
ORF1ab/nsp24R4CCgcTgc11B.1.3490.000715
ORF1ab/nsp24R4CCgcTgc11B.1.36.80.001
ORF1ab/nsp24R4CCgcTgc11B.1.36.90.003215
ORF1ab/nsp24R4CCgcTgc11B.1.3690.000285
ORF1ab/nsp24R4CCgcTgc11B.1.3930.028571
ORF1ab/nsp24R4CCgcTgc11B.1.4000.000429
ORF1ab/nsp24R4CCgcTgc11B.1.4030.003268
ORF1ab/nsp24R4CCgcTgc11B.1.4050.012346
ORF1ab/nsp24R4CCgcTgc11B.1.4160.001269
ORF1ab/nsp24R4CCgcTgc11B.1.416.10.001563
ORF1ab/nsp24R4CCgcTgc11B.1.4270.00005
ORF1ab/nsp24R4CCgcTgc11B.1.4430.004673
ORF1ab/nsp24R4CCgcTgc11B.1.5030.002488
ORF1ab/nsp24R4CCgcTgc11B.1.5210.004975
ORF1ab/nsp24R4CCgcTgc11B.1.5510.00129
ORF1ab/nsp24R4CCgcTgc11B.1.5580.004566
ORF1ab/nsp24R4CCgcTgc11B.1.5650.00081
ORF1ab/nsp24R4CCgcTgc11B.1.5740.002151
ORF1ab/nsp24R4CCgcTgc11B.1.5750.000303
ORF1ab/nsp24R4CCgcTgc11B.1.619.10.000641
ORF1ab/nsp24R4CCgcTgc11B.1.6360.006711
ORF1ab/nsp24R4CCgcTgc11B.100.008264
ORF1ab/nsp24R4CCgcTgc11B.4.70.010101
ORF1ab/nsp24R4CCgcTgc11B.400.000364
ORF1ab/nsp24R4CCgcTgc11B.570.015152
ORF1ab/nsp24R4CCgcTgc11C.260.007353
ORF1ab/nsp24R4CCgcTgc11C.390.018868
ORF1ab/nsp24R4CCgcTgc11N.50.001767
ORF1ab/nsp24R4CCgcTgc11P.1.150.000232
ORF1ab/nsp24R4CCgcTgc11P.1.170.000162
ORF1ab/nsp24R4CCgcTgc11W.10.008696
ORF1ab/nsp24R4CCgcTgc11Y.10.012821