CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = R380Y

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2380R380YR560YnonsynCGtTAt35300.8571431943-1945
ORF1ab/nsp2380R380YR560YnonsynCGTTAC3550.1428571943-1945

Details of the mutation R380Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2380R380YCGtTAt3035All0.000006
ORF1ab/nsp2380R380YCGTTAC535All0.000001
ORF1ab/nsp2380R380YCGtTAt2628B.1.1.70.000023
ORF1ab/nsp2380R380YCGTTAC228B.1.1.70.000002
ORF1ab/nsp2380R380YCGTTAC24B.10.000018
ORF1ab/nsp2380R380YCGtTAt24B.10.000018
ORF1ab/nsp2380R380YCGTTAC11AY.1190.000035
ORF1ab/nsp2380R380YCGtTAt11B.1.10.000018
ORF1ab/nsp2380R380YCGtTAt11P.10.000016