CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = R380R

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2380R380RR560RsyncgTcgC7965590.7022611943-1945
ORF1ab/nsp2380R380RR560RsyncgTcgG7961490.1871861943-1945
ORF1ab/nsp2380R380RR560RsyncgTcgA796690.08668341943-1945
ORF1ab/nsp2380R380RR560RsynCgTAgA796110.01381911943-1945
ORF1ab/nsp2380R380RR560RsynCgTAgG79680.01005031943-1945

Details of the mutation R380R within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2380R380RcgTcgC559796All0.000107
ORF1ab/nsp2380R380RcgTcgG149796All0.000028
ORF1ab/nsp2380R380RcgTcgA69796All0.000013
ORF1ab/nsp2380R380RCgTAgA11796All0.000002
ORF1ab/nsp2380R380RCgTAgG8796All0.000002
ORF1ab/nsp2380R380RcgTcgC237237AY.4.20.00514
ORF1ab/nsp2380R380RcgTcgG8994AY.440.000542
ORF1ab/nsp2380R380RcgTcgC594AY.440.00003
ORF1ab/nsp2380R380RcgTcgC7576AY.40.000117
ORF1ab/nsp2380R380RcgTcgG176AY.40.000002
ORF1ab/nsp2380R380RcgTcgC4559B.1.1.70.00004
ORF1ab/nsp2380R380RCgTAgA859B.1.1.70.000007
ORF1ab/nsp2380R380RCgTAgG359B.1.1.70.000003
ORF1ab/nsp2380R380RcgTcgG259B.1.1.70.000002
ORF1ab/nsp2380R380RcgTcgA159B.1.1.70.000001
ORF1ab/nsp2380R380RcgTcgA5154AY.1030.000317
ORF1ab/nsp2380R380RcgTcgC354AY.1030.000019
ORF1ab/nsp2380R380RcgTcgG1739B.10.000156
ORF1ab/nsp2380R380RcgTcgC1139B.10.000101
ORF1ab/nsp2380R380RcgTcgA839B.10.000073
ORF1ab/nsp2380R380RCgTAgG239B.10.000018
ORF1ab/nsp2380R380RCgTAgA139B.10.000009
ORF1ab/nsp2380R380RcgTcgC3436B.1.2580.002263
ORF1ab/nsp2380R380RcgTcgG136B.1.2580.000067
ORF1ab/nsp2380R380RCgTAgG136B.1.2580.000067
ORF1ab/nsp2380R380RcgTcgC2930AY.430.000128
ORF1ab/nsp2380R380RcgTcgG130AY.430.000004
ORF1ab/nsp2380R380RcgTcgC1921B.1.617.20.000072
ORF1ab/nsp2380R380RcgTcgA121B.1.617.20.000004
ORF1ab/nsp2380R380RcgTcgG121B.1.617.20.000004
ORF1ab/nsp2380R380RcgTcgG1818AY.3.10.001535
ORF1ab/nsp2380R380RcgTcgC1515AY.30.000149
ORF1ab/nsp2380R380RcgTcgC1313AY.1060.004354
ORF1ab/nsp2380R380RcgTcgC99B.1.1.280.002801
ORF1ab/nsp2380R380RcgTcgC88B.1.20.00007
ORF1ab/nsp2380R380RcgTcgC47B.1.10.000073
ORF1ab/nsp2380R380RcgTcgG27B.1.10.000036
ORF1ab/nsp2380R380RcgTcgA17B.1.10.000018
ORF1ab/nsp2380R380RcgTcgC45AY.260.000113
ORF1ab/nsp2380R380RcgTcgG15AY.260.000028
ORF1ab/nsp2380R380RcgTcgC55AY.450.000608
ORF1ab/nsp2380R380RCgTAgG15B.1.1770.000013
ORF1ab/nsp2380R380RCgTAgA15B.1.1770.000013
ORF1ab/nsp2380R380RcgTcgA15B.1.1770.000013
ORF1ab/nsp2380R380RcgTcgG15B.1.1770.000013
ORF1ab/nsp2380R380RcgTcgC15B.1.1770.000013
ORF1ab/nsp2380R380RcgTcgG55B.1.360.00073
ORF1ab/nsp2380R380RcgTcgC45D.20.0003
ORF1ab/nsp2380R380RcgTcgA15D.20.000075
ORF1ab/nsp2380R380RcgTcgC44AY.1190.000141
ORF1ab/nsp2380R380RCgTAgG14B.1.2210.000071
ORF1ab/nsp2380R380RCgTAgA14B.1.2210.000071
ORF1ab/nsp2380R380RcgTcgG14B.1.2210.000071
ORF1ab/nsp2380R380RcgTcgA14B.1.2210.000071
ORF1ab/nsp2380R380RcgTcgC44P.10.000063
ORF1ab/nsp2380R380RcgTcgC33AY.750.000168
ORF1ab/nsp2380R380RcgTcgC33B.1.4290.000071
ORF1ab/nsp2380R380RcgTcgC22AY.1210.000271
ORF1ab/nsp2380R380RcgTcgC22AY.250.000012
ORF1ab/nsp2380R380RcgTcgC22AY.39.10.000079
ORF1ab/nsp2380R380RcgTcgG12B.1.1.10.000327
ORF1ab/nsp2380R380RcgTcgA12B.1.1.10.000327
ORF1ab/nsp2380R380RcgTcgG22B.1.1600.000062
ORF1ab/nsp2380R380RcgTcgC22B.1.177.570.000562
ORF1ab/nsp2380R380RcgTcgC22B.1.2220.003384
ORF1ab/nsp2380R380RcgTcgC22B.1.4270.000101
ORF1ab/nsp2380R380RcgTcgC22B.1.5260.000047
ORF1ab/nsp2380R380RcgTcgG12B.1.6090.000479
ORF1ab/nsp2380R380RcgTcgA12B.1.6090.000479
ORF1ab/nsp2380R380RcgTcgC11AY.160.00038
ORF1ab/nsp2380R380RcgTcgG11AY.200.000039
ORF1ab/nsp2380R380RcgTcgC11AY.34.10.00051
ORF1ab/nsp2380R380RcgTcgC11AY.420.00004
ORF1ab/nsp2380R380RcgTcgC11AY.470.000031
ORF1ab/nsp2380R380RcgTcgA11AY.740.000116
ORF1ab/nsp2380R380RcgTcgC11B.1.1.1220.045455
ORF1ab/nsp2380R380RcgTcgG11B.1.1.1700.001247
ORF1ab/nsp2380R380RcgTcgC11B.1.1.3540.004386
ORF1ab/nsp2380R380RcgTcgG11B.1.1.3690.000446
ORF1ab/nsp2380R380RcgTcgC11B.1.1.3720.000689
ORF1ab/nsp2380R380RcgTcgC11B.1.1.700.000341
ORF1ab/nsp2380R380RcgTcgC11B.1.160.70.002079
ORF1ab/nsp2380R380RcgTcgG11B.1.177.110.001698
ORF1ab/nsp2380R380RcgTcgA11B.1.4160.001269
ORF1ab/nsp2380R380RcgTcgC11B.1.5960.000087
ORF1ab/nsp2380R380RcgTcgG11B.230.002924