CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = R380P

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2380R380PR560PnonsyncGtcCt47270.5744681943-1945
ORF1ab/nsp2380R380PR560PnonsyncGTcCG47100.2127661943-1945
ORF1ab/nsp2380R380PR560PnonsyncGTcCA4760.127661943-1945
ORF1ab/nsp2380R380PR560PnonsyncGTcCC4740.08510641943-1945

Details of the mutation R380P within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2380R380PcGtcCt2747All0.000005
ORF1ab/nsp2380R380PcGTcCG1047All0.000002
ORF1ab/nsp2380R380PcGTcCA647All0.000001
ORF1ab/nsp2380R380PcGTcCC447All0.000001
ORF1ab/nsp2380R380PcGtcCt1327B.10.000119
ORF1ab/nsp2380R380PcGTcCG727B.10.000064
ORF1ab/nsp2380R380PcGTcCA427B.10.000037
ORF1ab/nsp2380R380PcGTcCC327B.10.000027
ORF1ab/nsp2380R380PcGtcCt66AY.1130.000854
ORF1ab/nsp2380R380PcGTcCA13B.1.1.10.000327
ORF1ab/nsp2380R380PcGTcCG13B.1.1.10.000327
ORF1ab/nsp2380R380PcGtcCt13B.1.1.10.000327
ORF1ab/nsp2380R380PcGTcCC13B.1.2580.000067
ORF1ab/nsp2380R380PcGTcCG13B.1.2580.000067
ORF1ab/nsp2380R380PcGtcCt13B.1.2580.000067
ORF1ab/nsp2380R380PcGtcCt13B.1.6090.000479
ORF1ab/nsp2380R380PcGTcCG13B.1.6090.000479
ORF1ab/nsp2380R380PcGTcCA13B.1.6090.000479
ORF1ab/nsp2380R380PcGtcCt22P.1.150.000465
ORF1ab/nsp2380R380PcGtcCt11AY.40.000002
ORF1ab/nsp2380R380PcGtcCt11B.1.1600.000031
ORF1ab/nsp2380R380PcGtcCt11B.1.20.000009