CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = R380C

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2380R380CR560CnonsynCgtTgt465746530.9991411943-1945
ORF1ab/nsp2380R380CR560CnonsynCgTTgC465740.0008589221943-1945

Details of the mutation R380C within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2380R380CCgtTgt46534657All0.00089
ORF1ab/nsp2380R380CCgTTgC44657All0.000001
ORF1ab/nsp2380R380CCgtTgt20222022AE.80.988753
ORF1ab/nsp2380R380CCgtTgt584586B.1.1.70.000523
ORF1ab/nsp2380R380CCgTTgC2586B.1.1.70.000002
ORF1ab/nsp2380R380CCgtTgt403403AY.23.10.168197
ORF1ab/nsp2380R380CCgtTgt389389AY.1030.002415
ORF1ab/nsp2380R380CCgtTgt123123B.1.617.20.000463
ORF1ab/nsp2380R380CCgtTgt7171AY.40.000111
ORF1ab/nsp2380R380CCgtTgt6262AY.430.000275
ORF1ab/nsp2380R380CCgtTgt6062B.10.00055
ORF1ab/nsp2380R380CCgTTgC262B.10.000018
ORF1ab/nsp2380R380CCgtTgt5353B.1.177.210.004053
ORF1ab/nsp2380R380CCgtTgt4747AY.1100.005296
ORF1ab/nsp2380R380CCgtTgt4646AY.1190.001624
ORF1ab/nsp2380R380CCgtTgt3838AY.440.000231
ORF1ab/nsp2380R380CCgtTgt3535B.1.10.000635
ORF1ab/nsp2380R380CCgtTgt3535B.1.6210.003098
ORF1ab/nsp2380R380CCgtTgt3434AY.260.000963
ORF1ab/nsp2380R380CCgtTgt3131AY.750.001737
ORF1ab/nsp2380R380CCgtTgt3030B.1.4040.039062
ORF1ab/nsp2380R380CCgtTgt2828AY.250.000168
ORF1ab/nsp2380R380CCgtTgt2323AY.200.000894
ORF1ab/nsp2380R380CCgtTgt2121AY.7.10.002367
ORF1ab/nsp2380R380CCgtTgt2020B.1.20.000176
ORF1ab/nsp2380R380CCgtTgt1818B.1.1.10.00588
ORF1ab/nsp2380R380CCgtTgt1818B.1.2400.00388
ORF1ab/nsp2380R380CCgtTgt1717AY.290.000268
ORF1ab/nsp2380R380CCgtTgt1717B.1.258.170.001768
ORF1ab/nsp2380R380CCgtTgt1515AY.1020.000398
ORF1ab/nsp2380R380CCgtTgt1515AY.30.000149
ORF1ab/nsp2380R380CCgtTgt1515AY.4.20.000325
ORF1ab/nsp2380R380CCgtTgt1515P.10.000236
ORF1ab/nsp2380R380CCgtTgt1414B.1.1.3060.006138
ORF1ab/nsp2380R380CCgtTgt1414B.1.1770.000184
ORF1ab/nsp2380R380CCgtTgt1414B.1.5380.112903
ORF1ab/nsp2380R380CCgtTgt1313B.1.4290.000306
ORF1ab/nsp2380R380CCgtTgt1212P.1.170.001941
ORF1ab/nsp2380R380CCgtTgt1111Q.40.005002
ORF1ab/nsp2380R380CCgtTgt99AY.270.000582
ORF1ab/nsp2380R380CCgtTgt99AY.470.00028
ORF1ab/nsp2380R380CCgtTgt99P.1.150.002091
ORF1ab/nsp2380R380CCgtTgt88A0.003096
ORF1ab/nsp2380R380CCgtTgt88AY.330.000534
ORF1ab/nsp2380R380CCgtTgt88AY.50.000165
ORF1ab/nsp2380R380CCgtTgt88B.1.3110.002197
ORF1ab/nsp2380R380CCgtTgt77AY.390.000173
ORF1ab/nsp2380R380CCgtTgt77B.1.5970.032407
ORF1ab/nsp2380R380CCgtTgt77B.1.6090.003356
ORF1ab/nsp2380R380CCgtTgt66AY.340.000582
ORF1ab/nsp2380R380CCgtTgt66B.1.3510.000178
ORF1ab/nsp2380R380CCgtTgt66Q.10.000758
ORF1ab/nsp2380R380CCgtTgt55AY.5.30.001687
ORF1ab/nsp2380R380CCgtTgt44AY.1180.000251
ORF1ab/nsp2380R380CCgtTgt44B.1.1.5190.000159
ORF1ab/nsp2380R380CCgtTgt44B.1.2580.000266
ORF1ab/nsp2380R380CCgtTgt44B.1.360.000584
ORF1ab/nsp2380R380CCgtTgt44B.1.4270.000202
ORF1ab/nsp2380R380CCgtTgt44B.1.5750.001214
ORF1ab/nsp2380R380CCgtTgt44B.1.617.10.000516
ORF1ab/nsp2380R380CCgtTgt44C.36.30.002269
ORF1ab/nsp2380R380CCgtTgt33AY.1000.000138
ORF1ab/nsp2380R380CCgtTgt33AY.1170.000254
ORF1ab/nsp2380R380CCgtTgt33AY.46.10.00308
ORF1ab/nsp2380R380CCgtTgt33AY.540.000286
ORF1ab/nsp2380R380CCgtTgt33AY.9.20.00011
ORF1ab/nsp2380R380CCgtTgt33AY.99.20.000276
ORF1ab/nsp2380R380CCgtTgt33B.1.1.2980.002586
ORF1ab/nsp2380R380CCgtTgt33B.1.2060.002447
ORF1ab/nsp2380R380CCgtTgt33B.60.00273
ORF1ab/nsp2380R380CCgtTgt22AY.1050.001286
ORF1ab/nsp2380R380CCgtTgt22AY.116.10.000623
ORF1ab/nsp2380R380CCgtTgt22AY.1200.000074
ORF1ab/nsp2380R380CCgtTgt22AY.1210.000271
ORF1ab/nsp2380R380CCgtTgt22AY.230.000139
ORF1ab/nsp2380R380CCgtTgt22AY.280.003781
ORF1ab/nsp2380R380CCgtTgt22AY.29.10.000441
ORF1ab/nsp2380R380CCgtTgt22AY.300.000791
ORF1ab/nsp2380R380CCgtTgt22AY.420.00008
ORF1ab/nsp2380R380CCgtTgt22AY.70.000392
ORF1ab/nsp2380R380CCgtTgt22AY.840.000875
ORF1ab/nsp2380R380CCgtTgt22B.1.1.2140.000111
ORF1ab/nsp2380R380CCgtTgt22B.1.1.2220.000408
ORF1ab/nsp2380R380CCgtTgt22B.1.1.30.017391
ORF1ab/nsp2380R380CCgtTgt22B.1.1.330.000842
ORF1ab/nsp2380R380CCgtTgt22B.1.1.4160.00181
ORF1ab/nsp2380R380CCgtTgt22B.1.177.440.001038
ORF1ab/nsp2380R380CCgtTgt22B.1.177.810.000379
ORF1ab/nsp2380R380CCgtTgt22B.1.2340.000264
ORF1ab/nsp2380R380CCgtTgt22B.1.5260.000047
ORF1ab/nsp2380R380CCgtTgt22B.1.5990.007299
ORF1ab/nsp2380R380CCgtTgt22B.1.6230.001073
ORF1ab/nsp2380R380CCgtTgt22C.370.000232
ORF1ab/nsp2380R380CCgtTgt22D.20.00015
ORF1ab/nsp2380R380CCgtTgt22Q.80.00033
ORF1ab/nsp2380R380CCgtTgt22R.10.00018
ORF1ab/nsp2380R380CCgtTgt11A.50.001923
ORF1ab/nsp2380R380CCgtTgt11AY.1090.00074
ORF1ab/nsp2380R380CCgtTgt11AY.1130.000142
ORF1ab/nsp2380R380CCgtTgt11AY.130.000161
ORF1ab/nsp2380R380CCgtTgt11AY.3.10.000085
ORF1ab/nsp2380R380CCgtTgt11AY.370.000316
ORF1ab/nsp2380R380CCgtTgt11AY.39.10.00004
ORF1ab/nsp2380R380CCgtTgt11AY.4.2.10.000149
ORF1ab/nsp2380R380CCgtTgt11AY.4.50.000107
ORF1ab/nsp2380R380CCgtTgt11AY.460.000104
ORF1ab/nsp2380R380CCgtTgt11AY.46.40.000165
ORF1ab/nsp2380R380CCgtTgt11AY.46.60.000072
ORF1ab/nsp2380R380CCgtTgt11AY.520.000814
ORF1ab/nsp2380R380CCgtTgt11AY.530.000288
ORF1ab/nsp2380R380CCgtTgt11AY.550.000917
ORF1ab/nsp2380R380CCgtTgt11AY.650.000533
ORF1ab/nsp2380R380CCgtTgt11AY.670.000464
ORF1ab/nsp2380R380CCgtTgt11AY.680.000274
ORF1ab/nsp2380R380CCgtTgt11AY.710.000475
ORF1ab/nsp2380R380CCgtTgt11AY.720.001361
ORF1ab/nsp2380R380CCgtTgt11AY.75.10.00018
ORF1ab/nsp2380R380CCgtTgt11AY.850.000427
ORF1ab/nsp2380R380CCgtTgt11AY.880.000884
ORF1ab/nsp2380R380CCgtTgt11AY.90.000068
ORF1ab/nsp2380R380CCgtTgt11AY.9.10.000084
ORF1ab/nsp2380R380CCgtTgt11AY.930.000273
ORF1ab/nsp2380R380CCgtTgt11AY.940.000443
ORF1ab/nsp2380R380CCgtTgt11B0.000128
ORF1ab/nsp2380R380CCgtTgt11B.1.1.1010.01
ORF1ab/nsp2380R380CCgtTgt11B.1.1.1650.015385
ORF1ab/nsp2380R380CCgtTgt11B.1.1.1760.000439
ORF1ab/nsp2380R380CCgtTgt11B.1.1.2070.001182
ORF1ab/nsp2380R380CCgtTgt11B.1.1.2160.00089
ORF1ab/nsp2380R380CCgtTgt11B.1.1.2430.004082
ORF1ab/nsp2380R380CCgtTgt11B.1.1.2440.015385
ORF1ab/nsp2380R380CCgtTgt11B.1.1.2800.003086
ORF1ab/nsp2380R380CCgtTgt11B.1.1.2840.000107
ORF1ab/nsp2380R380CCgtTgt11B.1.1.2910.000742
ORF1ab/nsp2380R380CCgtTgt11B.1.1.3170.000412
ORF1ab/nsp2380R380CCgtTgt11B.1.1.3260.001761
ORF1ab/nsp2380R380CCgtTgt11B.1.1.3480.000796
ORF1ab/nsp2380R380CCgtTgt11B.1.1.3490.010309
ORF1ab/nsp2380R380CCgtTgt11B.1.1.3690.000446
ORF1ab/nsp2380R380CCgtTgt11B.1.1.4340.000349
ORF1ab/nsp2380R380CCgtTgt11B.1.1.4590.015385
ORF1ab/nsp2380R380CCgtTgt11B.1.1.540.003021
ORF1ab/nsp2380R380CCgtTgt11B.1.1280.000635
ORF1ab/nsp2380R380CCgtTgt11B.1.177.70.000165
ORF1ab/nsp2380R380CCgtTgt11B.1.177.730.000566
ORF1ab/nsp2380R380CCgtTgt11B.1.2210.000071
ORF1ab/nsp2380R380CCgtTgt11B.1.2390.001221
ORF1ab/nsp2380R380CCgtTgt11B.1.2430.00007
ORF1ab/nsp2380R380CCgtTgt11B.1.2790.000514
ORF1ab/nsp2380R380CCgtTgt11B.1.3500.002933
ORF1ab/nsp2380R380CCgtTgt11B.1.36.100.004785
ORF1ab/nsp2380R380CCgtTgt11B.1.36.290.000517
ORF1ab/nsp2380R380CCgtTgt11B.1.36.80.001
ORF1ab/nsp2380R380CCgtTgt11B.1.3670.000792
ORF1ab/nsp2380R380CCgtTgt11B.1.4160.001269
ORF1ab/nsp2380R380CCgtTgt11B.1.4220.000812
ORF1ab/nsp2380R380CCgtTgt11B.1.438.10.000107
ORF1ab/nsp2380R380CCgtTgt11B.1.4560.003268
ORF1ab/nsp2380R380CCgtTgt11B.1.466.20.000391
ORF1ab/nsp2380R380CCgtTgt11B.1.4990.00105
ORF1ab/nsp2380R380CCgtTgt11B.1.5250.000113
ORF1ab/nsp2380R380CCgtTgt11B.1.5480.035714
ORF1ab/nsp2380R380CCgtTgt11B.1.5950.000261
ORF1ab/nsp2380R380CCgtTgt11B.1.5960.000087
ORF1ab/nsp2380R380CCgtTgt11B.1.6270.00202
ORF1ab/nsp2380R380CCgtTgt11B.1.6330.041667
ORF1ab/nsp2380R380CCgtTgt11B.1.6370.000073
ORF1ab/nsp2380R380CCgtTgt11B.30.000831
ORF1ab/nsp2380R380CCgtTgt11B.390.002331
ORF1ab/nsp2380R380CCgtTgt11D.30.005917
ORF1ab/nsp2380R380CCgtTgt11P.1.140.000048
ORF1ab/nsp2380R380CCgtTgt11P.1.90.004808