CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = R380A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2380R380AR560AnonsynCGtGCt40180.451943-1945
ORF1ab/nsp2380R380AR560AnonsynCGTGCG40100.251943-1945
ORF1ab/nsp2380R380AR560AnonsynCGTGCA4080.21943-1945
ORF1ab/nsp2380R380AR560AnonsynCGTGCC4040.11943-1945

Details of the mutation R380A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2380R380ACGtGCt1840All0.000003
ORF1ab/nsp2380R380ACGTGCG1040All0.000002
ORF1ab/nsp2380R380ACGTGCA840All0.000002
ORF1ab/nsp2380R380ACGTGCC440All0.000001
ORF1ab/nsp2380R380ACGtGCt1327B.10.000119
ORF1ab/nsp2380R380ACGTGCG727B.10.000064
ORF1ab/nsp2380R380ACGTGCA427B.10.000037
ORF1ab/nsp2380R380ACGTGCC327B.10.000027
ORF1ab/nsp2380R380ACGTGCA13B.1.1.10.000327
ORF1ab/nsp2380R380ACGTGCG13B.1.1.10.000327
ORF1ab/nsp2380R380ACGtGCt13B.1.1.10.000327
ORF1ab/nsp2380R380ACGTGCC13B.1.2580.000067
ORF1ab/nsp2380R380ACGTGCG13B.1.2580.000067
ORF1ab/nsp2380R380ACGtGCt13B.1.2580.000067
ORF1ab/nsp2380R380ACGtGCt13B.1.6090.000479
ORF1ab/nsp2380R380ACGTGCG13B.1.6090.000479
ORF1ab/nsp2380R380ACGTGCA13B.1.6090.000479
ORF1ab/nsp2380R380ACGTGCA12B.1.1.70.000001
ORF1ab/nsp2380R380ACGtGCt12B.1.1.70.000001
ORF1ab/nsp2380R380ACGTGCA12B.1.1600.000031
ORF1ab/nsp2380R380ACGtGCt12B.1.1600.000031