CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 370 | R370C | R550C | nonsyn | Cgc | Tgc | 3759 | 3759 | 1 | 1913-1915 |
Details of the mutation R370C within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 3759 | 3759 | All | 0.000719 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1935 | 1935 | B.1.279 | 0.993837 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 359 | 359 | B.1.1.7 | 0.000321 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 211 | 211 | AY.4 | 0.000328 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 134 | 134 | AY.25 | 0.000806 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 88 | 88 | B.1.617.2 | 0.000331 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 84 | 84 | P.1 | 0.001323 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 60 | 60 | AY.44 | 0.000365 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 57 | 57 | AY.43 | 0.000253 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 45 | 45 | AY.103 | 0.000279 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 45 | 45 | B.1.2 | 0.000396 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 39 | 39 | B.1.525 | 0.004413 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 33 | 33 | B.1.438.1 | 0.00354 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 31 | 31 | AY.7.1 | 0.003494 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 31 | 31 | B.1 | 0.000284 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 31 | 31 | B.1.429 | 0.000729 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 30 | 30 | AY.4.2 | 0.000651 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 30 | 30 | C.36.3.1 | 0.081522 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 21 | 21 | Q.3 | 0.003046 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 19 | 19 | AY.42 | 0.000764 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 19 | 19 | B.1.36.9 | 0.061093 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 16 | 16 | B.1.568 | 0.017778 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 15 | 15 | AY.102 | 0.000398 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 15 | 15 | AY.95 | 0.011416 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 14 | 14 | AY.26 | 0.000396 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 14 | 14 | B.1.1.519 | 0.000556 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 11 | 11 | AY.3 | 0.000109 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 11 | 11 | AY.33 | 0.000735 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 11 | 11 | AY.5 | 0.000227 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 11 | 11 | B | 0.001406 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 11 | 11 | B.1.526 | 0.000259 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 10 | 10 | AY.98.1 | 0.000484 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 10 | 10 | B.1.1.337 | 0.035971 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 9 | 9 | B.1.177.86 | 0.001651 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 8 | 8 | AY.29 | 0.000126 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 8 | 8 | AY.6 | 0.000329 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 8 | 8 | B.1.177 | 0.000105 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 8 | 8 | B.1.621 | 0.000708 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 7 | 7 | AY.119 | 0.000247 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 7 | 7 | AY.39 | 0.000173 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 7 | 7 | AY.54 | 0.000667 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 7 | 7 | AY.84 | 0.003062 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 7 | 7 | B.1.241 | 0.005682 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 6 | 6 | B.1.1 | 0.000109 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 6 | 6 | B.1.160 | 0.000187 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 6 | 6 | B.1.631 | 0.020202 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 5 | 5 | AE.8 | 0.002445 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 5 | 5 | B.1.36 | 0.00073 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 5 | 5 | P.1.14 | 0.000239 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 4 | 4 | AY.19 | 0.004561 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 4 | 4 | AY.46 | 0.000416 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 4 | 4 | AY.98 | 0.000316 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 4 | 4 | B.1.1.316 | 0.0037 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 4 | 4 | B.1.1.70 | 0.001364 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 4 | 4 | B.1.177.8 | 0.00301 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 4 | 4 | B.1.258.17 | 0.000416 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 4 | 4 | B.1.351 | 0.000119 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 4 | 4 | B.1.637 | 0.000292 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 3 | 3 | AY.12 | 0.000948 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 3 | 3 | AY.59 | 0.001589 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 3 | 3 | AY.64 | 0.001786 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 3 | 3 | AY.70 | 0.000626 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 3 | 3 | B.1.1.284 | 0.000322 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 3 | 3 | B.1.1.294 | 0.003797 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 3 | 3 | B.1.36.8 | 0.003 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 2 | 2 | AY.120.2 | 0.002571 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 2 | 2 | B.1.1.419 | 0.014815 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 2 | 2 | B.1.1.486 | 0.003155 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 2 | 2 | B.1.149 | 0.006849 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 2 | 2 | B.1.177.32 | 0.002699 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 2 | 2 | B.1.416 | 0.002538 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 2 | 2 | B.6.6 | 0.001778 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.1.385 | 0.004464 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.1.435 | 0.034483 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.1.524 | 0.020833 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.1.74 | 0.00431 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.112 | 0.005181 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.177.80 | 0.001912 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.227 | 0.047619 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.3 | 0.002618 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.413 | 0.004255 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.520 | 0.021739 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.541 | 0.004425 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.549 | 0.007194 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.564.1 | 0.001577 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.28 | 0.003279 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.4.1 | 0.018868 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | P.1.10.1 | 0.00813 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | P.1.8 | 0.004785 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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