CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = R27R

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp227R27RR207RsyncgTcgC3573450.966387884-886
ORF1ab/nsp227R27RR207RsyncgTcgG35770.0196078884-886
ORF1ab/nsp227R27RR207RsyncgTcgA35750.0140056884-886

Details of the mutation R27R within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp227R27RcgTcgC345357All0.000066
ORF1ab/nsp227R27RcgTcgG7357All0.000001
ORF1ab/nsp227R27RcgTcgA5357All0.000001
ORF1ab/nsp227R27RcgTcgC8285AY.1030.000509
ORF1ab/nsp227R27RcgTcgG385AY.1030.000019
ORF1ab/nsp227R27RcgTcgC7778B.1.1.70.000069
ORF1ab/nsp227R27RcgTcgA178B.1.1.70.000001
ORF1ab/nsp227R27RcgTcgC5656B.1.617.20.000211
ORF1ab/nsp227R27RcgTcgC3636AY.40.000056
ORF1ab/nsp227R27RcgTcgC88P.10.000126
ORF1ab/nsp227R27RcgTcgC67B.1.10.000109
ORF1ab/nsp227R27RcgTcgA17B.1.10.000018
ORF1ab/nsp227R27RcgTcgC66AY.1020.000159
ORF1ab/nsp227R27RcgTcgC66AY.440.000037
ORF1ab/nsp227R27RcgTcgC45AY.390.000099
ORF1ab/nsp227R27RcgTcgG15AY.390.000025
ORF1ab/nsp227R27RcgTcgC55AY.4.20.000108
ORF1ab/nsp227R27RcgTcgC35AY.450.000365
ORF1ab/nsp227R27RcgTcgA25AY.450.000243
ORF1ab/nsp227R27RcgTcgC55B.1.177.870.003639
ORF1ab/nsp227R27RcgTcgC44AY.1000.000184
ORF1ab/nsp227R27RcgTcgC44AY.250.000024
ORF1ab/nsp227R27RcgTcgC33AY.290.000047
ORF1ab/nsp227R27RcgTcgC33AY.640.001786
ORF1ab/nsp227R27RcgTcgC23B.10.000018
ORF1ab/nsp227R27RcgTcgG13B.10.000009
ORF1ab/nsp227R27RcgTcgC22AY.330.000134
ORF1ab/nsp227R27RcgTcgC22AY.430.000009
ORF1ab/nsp227R27RcgTcgC22AY.460.000208
ORF1ab/nsp227R27RcgTcgC22AY.5.30.000675
ORF1ab/nsp227R27RcgTcgC22AY.750.000112
ORF1ab/nsp227R27RcgTcgC22AY.920.000575
ORF1ab/nsp227R27RcgTcgC22B.1.466.20.000782
ORF1ab/nsp227R27RcgTcgC22B.1.5750.000607
ORF1ab/nsp227R27RcgTcgG11AY.10.000396
ORF1ab/nsp227R27RcgTcgC11AY.100.00053
ORF1ab/nsp227R27RcgTcgC11AY.1200.000037
ORF1ab/nsp227R27RcgTcgC11AY.200.000039
ORF1ab/nsp227R27RcgTcgC11AY.230.00007
ORF1ab/nsp227R27RcgTcgC11AY.260.000028
ORF1ab/nsp227R27RcgTcgC11AY.320.000532
ORF1ab/nsp227R27RcgTcgC11AY.360.000148
ORF1ab/nsp227R27RcgTcgC11AY.50.000021
ORF1ab/nsp227R27RcgTcgC11AY.60.000041
ORF1ab/nsp227R27RcgTcgC11AY.990.001049
ORF1ab/nsp227R27RcgTcgC11AY.99.20.000092
ORF1ab/nsp227R27RcgTcgC11B.1.1.3060.000438
ORF1ab/nsp227R27RcgTcgC11B.1.1.5190.00004
ORF1ab/nsp227R27RcgTcgC11B.1.177.540.000606
ORF1ab/nsp227R27RcgTcgC11B.1.177.650.000665
ORF1ab/nsp227R27RcgTcgC11B.1.177.70.000165
ORF1ab/nsp227R27RcgTcgC11B.1.360.000146
ORF1ab/nsp227R27RcgTcgA11B.1.36.180.00042
ORF1ab/nsp227R27RcgTcgC11B.1.466.10.007194
ORF1ab/nsp227R27RcgTcgG11B.1.4970.000315
ORF1ab/nsp227R27RcgTcgC11N.90.005952