CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = R246R

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2246R246RR426RsyncgTcgA4793520.7348641541-1543
ORF1ab/nsp2246R246RR426RsyncgTcgC4791130.2359081541-1543
ORF1ab/nsp2246R246RR426RsyncgTcgG479110.02296451541-1543
ORF1ab/nsp2246R246RR426RsynCgTAgG47920.004175371541-1543
ORF1ab/nsp2246R246RR426RsynCgTAgA47910.002087681541-1543

Details of the mutation R246R within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2246R246RcgTcgA352479All0.000067
ORF1ab/nsp2246R246RcgTcgC113479All0.000022
ORF1ab/nsp2246R246RcgTcgG11479All0.000002
ORF1ab/nsp2246R246RCgTAgG2479All0
ORF1ab/nsp2246R246RCgTAgA1479All0
ORF1ab/nsp2246R246RcgTcgA324324B.1.1.2801
ORF1ab/nsp2246R246RcgTcgA1313B.10.000119
ORF1ab/nsp2246R246RcgTcgC1212B.1.1.70.000011
ORF1ab/nsp2246R246RcgTcgC1111B.1.20.000097
ORF1ab/nsp2246R246RcgTcgC99AY.1030.000056
ORF1ab/nsp2246R246RcgTcgC99B.1.6210.000797
ORF1ab/nsp2246R246RcgTcgC88AY.440.000049
ORF1ab/nsp2246R246RcgTcgC270.111111
ORF1ab/nsp2246R246RcgTcgG270.111111
ORF1ab/nsp2246R246RCgTAgG170.055556
ORF1ab/nsp2246R246RcgTcgA170.055556
ORF1ab/nsp2246R246RCgTAgA170.055556
ORF1ab/nsp2246R246RcgTcgC56AY.40.000008
ORF1ab/nsp2246R246RcgTcgA16AY.40.000002
ORF1ab/nsp2246R246RcgTcgC55A.2.50.002495
ORF1ab/nsp2246R246RcgTcgC55AY.250.00003
ORF1ab/nsp2246R246RcgTcgA55AY.270.000324
ORF1ab/nsp2246R246RcgTcgC55B.1.5240.007032
ORF1ab/nsp2246R246RcgTcgC44B.1.1.4320.005063
ORF1ab/nsp2246R246RcgTcgG24B.1.617.20.000008
ORF1ab/nsp2246R246RcgTcgC24B.1.617.20.000008
ORF1ab/nsp2246R246RcgTcgC33AY.360.000445
ORF1ab/nsp2246R246RcgTcgC33AY.99.20.000276
ORF1ab/nsp2246R246RcgTcgC33B.1.10.000054
ORF1ab/nsp2246R246RcgTcgA33P.1.140.000143
ORF1ab/nsp2246R246RcgTcgC22AY.190.002281
ORF1ab/nsp2246R246RcgTcgC22AY.240.000862
ORF1ab/nsp2246R246RcgTcgC22B.1.177.210.000153
ORF1ab/nsp2246R246RcgTcgG12B.1.4170.028571
ORF1ab/nsp2246R246RCgTAgG12B.1.4170.028571
ORF1ab/nsp2246R246RcgTcgC22B.1.6090.000959
ORF1ab/nsp2246R246RcgTcgC11AY.1130.000142
ORF1ab/nsp2246R246RcgTcgC11AY.1140.000231
ORF1ab/nsp2246R246RcgTcgG11AY.1190.000035
ORF1ab/nsp2246R246RcgTcgA11AY.120.10.000321
ORF1ab/nsp2246R246RcgTcgC11AY.200.000039
ORF1ab/nsp2246R246RcgTcgC11AY.290.000016
ORF1ab/nsp2246R246RcgTcgC11AY.29.10.000221
ORF1ab/nsp2246R246RcgTcgC11AY.30.00001
ORF1ab/nsp2246R246RcgTcgG11AY.340.000097
ORF1ab/nsp2246R246RcgTcgC11AY.390.000025
ORF1ab/nsp2246R246RcgTcgC11AY.39.10.00004
ORF1ab/nsp2246R246RcgTcgA11AY.9.20.000037
ORF1ab/nsp2246R246RcgTcgC11AY.98.10.000048
ORF1ab/nsp2246R246RcgTcgC11AZ.20.000821
ORF1ab/nsp2246R246RcgTcgG11B.1.1.1480.008772
ORF1ab/nsp2246R246RcgTcgC11B.1.1.2270.004348
ORF1ab/nsp2246R246RcgTcgC11B.1.1.370.000193
ORF1ab/nsp2246R246RcgTcgA11B.1.130.002375
ORF1ab/nsp2246R246RcgTcgC11B.1.1770.000013
ORF1ab/nsp2246R246RcgTcgA11B.1.177.600.000218
ORF1ab/nsp2246R246RcgTcgC11B.1.3110.000275
ORF1ab/nsp2246R246RcgTcgC11B.1.3510.00003
ORF1ab/nsp2246R246RcgTcgC11B.1.466.20.000391
ORF1ab/nsp2246R246RcgTcgC11B.1.5960.000087
ORF1ab/nsp2246R246RcgTcgC11B.1.6360.006711
ORF1ab/nsp2246R246RcgTcgG11C.110.010638
ORF1ab/nsp2246R246RcgTcgG11C.350.000774
ORF1ab/nsp2246R246RcgTcgA11P.10.000016
ORF1ab/nsp2246R246RcgTcgC11Q.30.000145
ORF1ab/nsp2246R246RcgTcgG11R.10.00009