CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = R218C

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2218R218CR398CnonsynCgtTgt6137613711457-1459

Details of the mutation R218C within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2218R218CCgtTgt61376137All0.001174
ORF1ab/nsp2218R218CCgtTgt17371737B.1.4290.04087
ORF1ab/nsp2218R218CCgtTgt516516AY.40.000803
ORF1ab/nsp2218R218CCgtTgt409409B.1.1.70.000366
ORF1ab/nsp2218R218CCgtTgt256256B.1.20.002254
ORF1ab/nsp2218R218CCgtTgt143143B.1.617.20.000538
ORF1ab/nsp2218R218CCgtTgt135135B.10.001237
ORF1ab/nsp2218R218CCgtTgt122122AY.30.001213
ORF1ab/nsp2218R218CCgtTgt121121B.400.04408
ORF1ab/nsp2218R218CCgtTgt105105B.1.1600.003275
ORF1ab/nsp2218R218CCgtTgt103103AY.270.006666
ORF1ab/nsp2218R218CCgtTgt102102AY.440.000621
ORF1ab/nsp2218R218CCgtTgt101101B.1.10.001832
ORF1ab/nsp2218R218CCgtTgt101101B.1.1770.00133
ORF1ab/nsp2218R218CCgtTgt9696AY.9.10.008038
ORF1ab/nsp2218R218CCgtTgt9191AY.820.123474
ORF1ab/nsp2218R218CCgtTgt8787AY.250.000523
ORF1ab/nsp2218R218CCgtTgt8282AY.1030.000509
ORF1ab/nsp2218R218CCgtTgt7878B.1.2430.005428
ORF1ab/nsp2218R218CCgtTgt7676B.1.4270.003838
ORF1ab/nsp2218R218CCgtTgt7474AY.430.000328
ORF1ab/nsp2218R218CCgtTgt6767AY.98.10.003245
ORF1ab/nsp2218R218CCgtTgt6060AY.140.005281
ORF1ab/nsp2218R218CCgtTgt5050AY.39.10.001981
ORF1ab/nsp2218R218CCgtTgt5050P.10.000788
ORF1ab/nsp2218R218CCgtTgt4747B.1.2580.003128
ORF1ab/nsp2218R218CCgtTgt4242AY.860.034855
ORF1ab/nsp2218R218CCgtTgt4141B.1.1.3941
ORF1ab/nsp2218R218CCgtTgt3939B.1.220.051383
ORF1ab/nsp2218R218CCgtTgt3737AY.50.000764
ORF1ab/nsp2218R218CCgtTgt3636B.1.438.10.003861
ORF1ab/nsp2218R218CCgtTgt3535AY.470.001089
ORF1ab/nsp2218R218CCgtTgt3333B.1.1.5190.00131
ORF1ab/nsp2218R218CCgtTgt3030AY.290.000473
ORF1ab/nsp2218R218CCgtTgt2929B.1.177.810.00549
ORF1ab/nsp2218R218CCgtTgt2424AY.300.009497
ORF1ab/nsp2218R218CCgtTgt2424B.1.5260.000564
ORF1ab/nsp2218R218CCgtTgt2323B.1.177.730.013024
ORF1ab/nsp2218R218CCgtTgt2121AY.1180.001316
ORF1ab/nsp2218R218CCgtTgt2020AY.200.000777
ORF1ab/nsp2218R218CCgtTgt2020AY.260.000566
ORF1ab/nsp2218R218CCgtTgt1818AY.340.001745
ORF1ab/nsp2218R218CCgtTgt1818AY.390.000445
ORF1ab/nsp2218R218CCgtTgt1818AY.4.20.00039
ORF1ab/nsp2218R218CCgtTgt1818B.1.5960.001568
ORF1ab/nsp2218R218CCgtTgt1717AY.1020.000451
ORF1ab/nsp2218R218CCgtTgt1717B.1.3110.004668
ORF1ab/nsp2218R218CCgtTgt1616B.1.1.2940.020253
ORF1ab/nsp2218R218CCgtTgt1616B.1.5250.001811
ORF1ab/nsp2218R218CCgtTgt1414AY.1210.001894
ORF1ab/nsp2218R218CCgtTgt1414B.1.177.210.001071
ORF1ab/nsp2218R218CCgtTgt1414B.1.36.240.08642
ORF1ab/nsp2218R218CCgtTgt1212B.1.1.2220.002448
ORF1ab/nsp2218R218CCgtTgt1212B.1.5640.005111
ORF1ab/nsp2218R218CCgtTgt1212Z.10.034682
ORF1ab/nsp2218R218CCgtTgt1111A.10.0031
ORF1ab/nsp2218R218CCgtTgt1111AY.5.30.003711
ORF1ab/nsp2218R218CCgtTgt1111B.1.466.20.004304
ORF1ab/nsp2218R218CCgtTgt1111B.1.6370.000804
ORF1ab/nsp2218R218CCgtTgt1111B.1.6390.23913
ORF1ab/nsp2218R218CCgtTgt1010B.1.1.2300.091743
ORF1ab/nsp2218R218CCgtTgt1010B.1.3510.000297
ORF1ab/nsp2218R218CCgtTgt99AY.240.003879
ORF1ab/nsp2218R218CCgtTgt99AY.330.000601
ORF1ab/nsp2218R218CCgtTgt99P.1.140.00043
ORF1ab/nsp2218R218CCgtTgt99P.1.70.002874
ORF1ab/nsp2218R218CCgtTgt88AY.1190.000282
ORF1ab/nsp2218R218CCgtTgt88AY.610.000838
ORF1ab/nsp2218R218CCgtTgt88B.1.177.40.001688
ORF1ab/nsp2218R218CCgtTgt88B.1.3400.034335
ORF1ab/nsp2218R218CCgtTgt88B.1.360.001167
ORF1ab/nsp2218R218CCgtTgt88C.370.000929
ORF1ab/nsp2218R218CCgtTgt77AY.1000.000322
ORF1ab/nsp2218R218CCgtTgt77AY.1170.000592
ORF1ab/nsp2218R218CCgtTgt77AY.230.000488
ORF1ab/nsp2218R218CCgtTgt77AY.360.001037
ORF1ab/nsp2218R218CCgtTgt77AY.670.00325
ORF1ab/nsp2218R218CCgtTgt77AY.700.00146
ORF1ab/nsp2218R218CCgtTgt77B.1.1.4340.00244
ORF1ab/nsp2218R218CCgtTgt77B.1.1.700.002387
ORF1ab/nsp2218R218CCgtTgt77B.1.2210.000497
ORF1ab/nsp2218R218CCgtTgt66AY.540.000572
ORF1ab/nsp2218R218CCgtTgt66AY.590.003178
ORF1ab/nsp2218R218CCgtTgt66AY.60.000247
ORF1ab/nsp2218R218CCgtTgt66AY.90.000406
ORF1ab/nsp2218R218CCgtTgt66AY.9.20.00022
ORF1ab/nsp2218R218CCgtTgt66AY.99.20.000553
ORF1ab/nsp2218R218CCgtTgt66B0.000767
ORF1ab/nsp2218R218CCgtTgt66B.1.1.2140.000333
ORF1ab/nsp2218R218CCgtTgt66B.1.1.3260.010563
ORF1ab/nsp2218R218CCgtTgt66B.1.1.370.001157
ORF1ab/nsp2218R218CCgtTgt66B.1.1.4160.00543
ORF1ab/nsp2218R218CCgtTgt66B.1.160.160.005576
ORF1ab/nsp2218R218CCgtTgt66D.20.00045
ORF1ab/nsp2218R218CCgtTgt55AY.1200.000186
ORF1ab/nsp2218R218CCgtTgt55AY.450.000608
ORF1ab/nsp2218R218CCgtTgt55AY.46.20.003177
ORF1ab/nsp2218R218CCgtTgt55AY.740.000578
ORF1ab/nsp2218R218CCgtTgt55AY.750.00028
ORF1ab/nsp2218R218CCgtTgt55B.1.1.2200.009294
ORF1ab/nsp2218R218CCgtTgt55B.1.1.280.001556
ORF1ab/nsp2218R218CCgtTgt55B.1.1.3060.002192
ORF1ab/nsp2218R218CCgtTgt55B.1.5750.001517
ORF1ab/nsp2218R218CCgtTgt55P.1.150.001162
ORF1ab/nsp2218R218CCgtTgt44AY.46.30.003735
ORF1ab/nsp2218R218CCgtTgt44AY.75.10.000721
ORF1ab/nsp2218R218CCgtTgt44B.1.1.2840.00043
ORF1ab/nsp2218R218CCgtTgt44B.1.1.2860.011594
ORF1ab/nsp2218R218CCgtTgt44B.1.1.3160.0037
ORF1ab/nsp2218R218CCgtTgt44B.1.1.3170.001647
ORF1ab/nsp2218R218CCgtTgt44B.1.177.440.002076
ORF1ab/nsp2218R218CCgtTgt44B.1.36.10.004561
ORF1ab/nsp2218R218CCgtTgt44B.1.36.80.004
ORF1ab/nsp2218R218CCgtTgt44B.1.5380.032258
ORF1ab/nsp2218R218CCgtTgt44B.1.5760.003626
ORF1ab/nsp2218R218CCgtTgt44B.1.5880.00364
ORF1ab/nsp2218R218CCgtTgt33AY.1110.000549
ORF1ab/nsp2218R218CCgtTgt33AY.120.000948
ORF1ab/nsp2218R218CCgtTgt33AY.120.10.000963
ORF1ab/nsp2218R218CCgtTgt33AY.420.000121
ORF1ab/nsp2218R218CCgtTgt33AY.710.001425
ORF1ab/nsp2218R218CCgtTgt33AY.910.002191
ORF1ab/nsp2218R218CCgtTgt33AY.920.000862
ORF1ab/nsp2218R218CCgtTgt33AY.940.001328
ORF1ab/nsp2218R218CCgtTgt33AY.980.000237
ORF1ab/nsp2218R218CCgtTgt33B.1.1.3480.002389
ORF1ab/nsp2218R218CCgtTgt33B.1.177.330.004934
ORF1ab/nsp2218R218CCgtTgt33B.1.177.860.00055
ORF1ab/nsp2218R218CCgtTgt33B.1.2360.00616
ORF1ab/nsp2218R218CCgtTgt33B.1.2400.000647
ORF1ab/nsp2218R218CCgtTgt33B.1.36.220.003623
ORF1ab/nsp2218R218CCgtTgt33B.1.6230.001609
ORF1ab/nsp2218R218CCgtTgt33C.360.002732
ORF1ab/nsp2218R218CCgtTgt33R.10.00027
ORF1ab/nsp2218R218CCgtTgt33XA0.066667
ORF1ab/nsp2218R218CCgtTgt22AU.30.004219
ORF1ab/nsp2218R218CCgtTgt22AY.10.000791
ORF1ab/nsp2218R218CCgtTgt22AY.1140.000462
ORF1ab/nsp2218R218CCgtTgt22AY.3.10.000171
ORF1ab/nsp2218R218CCgtTgt22AY.4.50.000215
ORF1ab/nsp2218R218CCgtTgt22AY.460.000208
ORF1ab/nsp2218R218CCgtTgt22AY.630.000774
ORF1ab/nsp2218R218CCgtTgt22AY.690.000373
ORF1ab/nsp2218R218CCgtTgt22AY.990.002099
ORF1ab/nsp2218R218CCgtTgt22AY.99.10.003106
ORF1ab/nsp2218R218CCgtTgt22B.1.1.10.000653
ORF1ab/nsp2218R218CCgtTgt22B.1.1.1530.002191
ORF1ab/nsp2218R218CCgtTgt22B.1.1.2160.001781
ORF1ab/nsp2218R218CCgtTgt22B.1.1.2650.006309
ORF1ab/nsp2218R218CCgtTgt22B.1.1.3070.005063
ORF1ab/nsp2218R218CCgtTgt22B.1.1.330.000842
ORF1ab/nsp2218R218CCgtTgt22B.1.1.3620.011236
ORF1ab/nsp2218R218CCgtTgt22B.1.1.3890.012121
ORF1ab/nsp2218R218CCgtTgt22B.1.1.390.001019
ORF1ab/nsp2218R218CCgtTgt22B.1.1.3970.004505
ORF1ab/nsp2218R218CCgtTgt22B.1.1.4320.002532
ORF1ab/nsp2218R218CCgtTgt22B.1.1.4870.011173
ORF1ab/nsp2218R218CCgtTgt22B.1.1.5250.010929
ORF1ab/nsp2218R218CCgtTgt22B.1.177.120.000303
ORF1ab/nsp2218R218CCgtTgt22B.1.177.230.006472
ORF1ab/nsp2218R218CCgtTgt22B.1.177.530.004785
ORF1ab/nsp2218R218CCgtTgt22B.1.177.570.000562
ORF1ab/nsp2218R218CCgtTgt22B.1.177.60.001953
ORF1ab/nsp2218R218CCgtTgt22B.1.177.690.002967
ORF1ab/nsp2218R218CCgtTgt22B.1.2340.000264
ORF1ab/nsp2218R218CCgtTgt22B.1.3690.00057
ORF1ab/nsp2218R218CCgtTgt22B.1.3960.001411
ORF1ab/nsp2218R218CCgtTgt22B.1.4330.00639
ORF1ab/nsp2218R218CCgtTgt22B.1.4920.014085
ORF1ab/nsp2218R218CCgtTgt22B.1.6090.000959
ORF1ab/nsp2218R218CCgtTgt22B.1.617.10.000258
ORF1ab/nsp2218R218CCgtTgt22B.1.88.10.009615
ORF1ab/nsp2218R218CCgtTgt22N.60.014184
ORF1ab/nsp2218R218CCgtTgt22P.1.120.000968
ORF1ab/nsp2218R218CCgtTgt22P.70.008734
ORF1ab/nsp2218R218CCgtTgt22Q.10.000253
ORF1ab/nsp2218R218CCgtTgt22Q.80.00033
ORF1ab/nsp2218R218CCgtTgt11A.2.20.001689
ORF1ab/nsp2218R218CCgtTgt11AD.20.000219
ORF1ab/nsp2218R218CCgtTgt11AT.10.005128
ORF1ab/nsp2218R218CCgtTgt11AY.100.00053
ORF1ab/nsp2218R218CCgtTgt11AY.1050.000643
ORF1ab/nsp2218R218CCgtTgt11AY.1060.000335
ORF1ab/nsp2218R218CCgtTgt11AY.160.00038
ORF1ab/nsp2218R218CCgtTgt11AY.16.10.00047
ORF1ab/nsp2218R218CCgtTgt11AY.190.00114
ORF1ab/nsp2218R218CCgtTgt11AY.29.10.000221
ORF1ab/nsp2218R218CCgtTgt11AY.34.10.00051
ORF1ab/nsp2218R218CCgtTgt11AY.350.000233
ORF1ab/nsp2218R218CCgtTgt11AY.370.000316
ORF1ab/nsp2218R218CCgtTgt11AY.380.000499
ORF1ab/nsp2218R218CCgtTgt11AY.4.40.000409
ORF1ab/nsp2218R218CCgtTgt11AY.400.000964
ORF1ab/nsp2218R218CCgtTgt11AY.410.000294
ORF1ab/nsp2218R218CCgtTgt11AY.46.10.001027
ORF1ab/nsp2218R218CCgtTgt11AY.46.40.000165
ORF1ab/nsp2218R218CCgtTgt11AY.46.50.000198
ORF1ab/nsp2218R218CCgtTgt11AY.46.60.000072
ORF1ab/nsp2218R218CCgtTgt11AY.490.003195
ORF1ab/nsp2218R218CCgtTgt11AY.580.000907
ORF1ab/nsp2218R218CCgtTgt11AY.620.000436
ORF1ab/nsp2218R218CCgtTgt11AY.680.000274
ORF1ab/nsp2218R218CCgtTgt11AY.70.000196
ORF1ab/nsp2218R218CCgtTgt11AY.720.001361
ORF1ab/nsp2218R218CCgtTgt11AY.770.001127
ORF1ab/nsp2218R218CCgtTgt11AY.80.000606
ORF1ab/nsp2218R218CCgtTgt11AY.840.000437
ORF1ab/nsp2218R218CCgtTgt11AY.91.10.004065
ORF1ab/nsp2218R218CCgtTgt11AZ.20.000821
ORF1ab/nsp2218R218CCgtTgt11AZ.30.00152
ORF1ab/nsp2218R218CCgtTgt11B.1.1.100.001115
ORF1ab/nsp2218R218CCgtTgt11B.1.1.1650.015385
ORF1ab/nsp2218R218CCgtTgt11B.1.1.2050.003717
ORF1ab/nsp2218R218CCgtTgt11B.1.1.2080.012195
ORF1ab/nsp2218R218CCgtTgt11B.1.1.2280.003049
ORF1ab/nsp2218R218CCgtTgt11B.1.1.2320.001815
ORF1ab/nsp2218R218CCgtTgt11B.1.1.2530.002506
ORF1ab/nsp2218R218CCgtTgt11B.1.1.2740.005051
ORF1ab/nsp2218R218CCgtTgt11B.1.1.2800.003086
ORF1ab/nsp2218R218CCgtTgt11B.1.1.2900.018182
ORF1ab/nsp2218R218CCgtTgt11B.1.1.2980.000862
ORF1ab/nsp2218R218CCgtTgt11B.1.1.3110.000358
ORF1ab/nsp2218R218CCgtTgt11B.1.1.3180.000302
ORF1ab/nsp2218R218CCgtTgt11B.1.1.3680.003086
ORF1ab/nsp2218R218CCgtTgt11B.1.1.3720.000689
ORF1ab/nsp2218R218CCgtTgt11B.1.1.3750.011905
ORF1ab/nsp2218R218CCgtTgt11B.1.1.3780.007299
ORF1ab/nsp2218R218CCgtTgt11B.1.1.3980.003226
ORF1ab/nsp2218R218CCgtTgt11B.1.1.4030.025641
ORF1ab/nsp2218R218CCgtTgt11B.1.1.4120.007634
ORF1ab/nsp2218R218CCgtTgt11B.1.1.4380.05
ORF1ab/nsp2218R218CCgtTgt11B.1.1.4860.001577
ORF1ab/nsp2218R218CCgtTgt11B.1.1.500.000679
ORF1ab/nsp2218R218CCgtTgt11B.1.1.510.001718
ORF1ab/nsp2218R218CCgtTgt11B.1.1.5260.003546
ORF1ab/nsp2218R218CCgtTgt11B.1.1.540.003021
ORF1ab/nsp2218R218CCgtTgt11B.1.1.740.00431
ORF1ab/nsp2218R218CCgtTgt11B.1.1270.002198
ORF1ab/nsp2218R218CCgtTgt11B.1.1280.000635
ORF1ab/nsp2218R218CCgtTgt11B.1.1570.002985
ORF1ab/nsp2218R218CCgtTgt11B.1.160.130.027778
ORF1ab/nsp2218R218CCgtTgt11B.1.160.140.002119
ORF1ab/nsp2218R218CCgtTgt11B.1.160.280.002924
ORF1ab/nsp2218R218CCgtTgt11B.1.177.150.000631
ORF1ab/nsp2218R218CCgtTgt11B.1.177.170.000821
ORF1ab/nsp2218R218CCgtTgt11B.1.177.320.00135
ORF1ab/nsp2218R218CCgtTgt11B.1.177.350.000691
ORF1ab/nsp2218R218CCgtTgt11B.1.177.380.010417
ORF1ab/nsp2218R218CCgtTgt11B.1.177.50.001242
ORF1ab/nsp2218R218CCgtTgt11B.1.177.520.001757
ORF1ab/nsp2218R218CCgtTgt11B.1.177.600.000218
ORF1ab/nsp2218R218CCgtTgt11B.1.177.650.000665
ORF1ab/nsp2218R218CCgtTgt11B.1.177.70.000165
ORF1ab/nsp2218R218CCgtTgt11B.1.214.20.0006
ORF1ab/nsp2218R218CCgtTgt11B.1.221.20.004016
ORF1ab/nsp2218R218CCgtTgt11B.1.2320.000537
ORF1ab/nsp2218R218CCgtTgt11B.1.2420.018868
ORF1ab/nsp2218R218CCgtTgt11B.1.258.170.000104
ORF1ab/nsp2218R218CCgtTgt11B.1.258.30.001675
ORF1ab/nsp2218R218CCgtTgt11B.1.351.20.000303
ORF1ab/nsp2218R218CCgtTgt11B.1.351.30.000876
ORF1ab/nsp2218R218CCgtTgt11B.1.36.340.021277
ORF1ab/nsp2218R218CCgtTgt11B.1.36.350.002604
ORF1ab/nsp2218R218CCgtTgt11B.1.36.360.000602
ORF1ab/nsp2218R218CCgtTgt11B.1.3700.008
ORF1ab/nsp2218R218CCgtTgt11B.1.3950.007042
ORF1ab/nsp2218R218CCgtTgt11B.1.4000.000429
ORF1ab/nsp2218R218CCgtTgt11B.1.4040.001302
ORF1ab/nsp2218R218CCgtTgt11B.1.4260.001009
ORF1ab/nsp2218R218CCgtTgt11B.1.4440.015873
ORF1ab/nsp2218R218CCgtTgt11B.1.4530.003236
ORF1ab/nsp2218R218CCgtTgt11B.1.4690.00361
ORF1ab/nsp2218R218CCgtTgt11B.1.4700.001404
ORF1ab/nsp2218R218CCgtTgt11B.1.4710.002732
ORF1ab/nsp2218R218CCgtTgt11B.1.5090.000866
ORF1ab/nsp2218R218CCgtTgt11B.1.5230.002451
ORF1ab/nsp2218R218CCgtTgt11B.1.5370.02
ORF1ab/nsp2218R218CCgtTgt11B.1.5610.000397
ORF1ab/nsp2218R218CCgtTgt11B.1.575.10.002439
ORF1ab/nsp2218R218CCgtTgt11B.1.5780.017857
ORF1ab/nsp2218R218CCgtTgt11B.1.5800.004065
ORF1ab/nsp2218R218CCgtTgt11B.1.5950.000261
ORF1ab/nsp2218R218CCgtTgt11B.1.595.40.007299
ORF1ab/nsp2218R218CCgtTgt11B.1.6190.000871
ORF1ab/nsp2218R218CCgtTgt11B.1.6210.000089
ORF1ab/nsp2218R218CCgtTgt11B.1.6270.00202
ORF1ab/nsp2218R218CCgtTgt11C.110.010638
ORF1ab/nsp2218R218CCgtTgt11C.160.00106
ORF1ab/nsp2218R218CCgtTgt11C.180.002591
ORF1ab/nsp2218R218CCgtTgt11C.2.10.006667
ORF1ab/nsp2218R218CCgtTgt11C.230.005814
ORF1ab/nsp2218R218CCgtTgt11N.50.001767
ORF1ab/nsp2218R218CCgtTgt11P.1.100.000269
ORF1ab/nsp2218R218CCgtTgt11P.1.170.000162
ORF1ab/nsp2218R218CCgtTgt11P.20.000187
ORF1ab/nsp2218R218CCgtTgt11P.60.003145