CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = P624T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2624P624TP804TnonsynCctAct87850.9770122675-2677
ORF1ab/nsp2624P624TP804TnonsynCcTAcA8720.02298852675-2677

Details of the mutation P624T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2624P624TCctAct8587All0.000016
ORF1ab/nsp2624P624TCcTAcA287All0
ORF1ab/nsp2624P624TCctAct2929B.1.214.20.017386
ORF1ab/nsp2624P624TCctAct1313B.1.1.2650.041009
ORF1ab/nsp2624P624TCctAct88AY.30.00008
ORF1ab/nsp2624P624TCctAct77B.1.1.250.00398
ORF1ab/nsp2624P624TCctAct44B.1.10.000073
ORF1ab/nsp2624P624TCctAct33AY.40.000005
ORF1ab/nsp2624P624TCctAct33AY.440.000018
ORF1ab/nsp2624P624TCctAct22AY.250.000012
ORF1ab/nsp2624P624TCctAct12B.1.1.70.000001
ORF1ab/nsp2624P624TCcTAcA12B.1.1.70.000001
ORF1ab/nsp2624P624TCctAct22B.1.5250.000226
ORF1ab/nsp2624P624TCcTAcA12B.1.617.20.000004
ORF1ab/nsp2624P624TCctAct12B.1.617.20.000004
ORF1ab/nsp2624P624TCctAct22P.10.000032
ORF1ab/nsp2624P624TCctAct11AY.1030.000006
ORF1ab/nsp2624P624TCctAct11AY.430.000004
ORF1ab/nsp2624P624TCctAct11AY.510.000909
ORF1ab/nsp2624P624TCctAct11AY.550.000917
ORF1ab/nsp2624P624TCctAct11AY.75.10.00018
ORF1ab/nsp2624P624TCctAct11AY.950.000761
ORF1ab/nsp2624P624TCctAct11B.10.000009
ORF1ab/nsp2624P624TCctAct11B.1.1.2220.000204
ORF1ab/nsp2624P624TCctAct11B.1.20.000009
ORF1ab/nsp2624P624TCctAct11B.1.2580.000067

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.