CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 568 | P568P | P748P | syn | ccC | ccT | 39113 | 39033 | 0.997955 | 2507-2509 |
ORF1ab/nsp2 | 568 | P568P | P748P | syn | ccC | ccA | 39113 | 48 | 0.00122721 | 2507-2509 |
ORF1ab/nsp2 | 568 | P568P | P748P | syn | ccC | ccG | 39113 | 32 | 0.000818142 | 2507-2509 |
Details of the mutation P568P within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 39033 | 39113 | All | 0.007466 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccA | 48 | 39113 | All | 0.000009 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccG | 32 | 39113 | All | 0.000006 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 9269 | 9269 | B.1.177.21 | 0.708802 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 8130 | 8130 | AY.74 | 0.94021 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 4358 | 4370 | B.1.1.7 | 0.003901 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccA | 9 | 4370 | B.1.1.7 | 0.000008 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccG | 3 | 4370 | B.1.1.7 | 0.000003 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2777 | 2777 | AY.2 | 0.98896 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2744 | 2744 | AY.37 | 0.867257 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1824 | 1824 | AY.71 | 0.866508 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1519 | 1519 | AY.38 | 0.758362 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 877 | 880 | B.1.617.2 | 0.003302 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccA | 3 | 880 | B.1.617.2 | 0.000011 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 835 | 835 | AY.73 | 0.555556 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 705 | 705 | AY.72 | 0.959184 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 577 | 577 | A.27 | 0.955298 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 554 | 556 | AY.44 | 0.003372 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccG | 1 | 556 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccA | 1 | 556 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 372 | 374 | AY.4 | 0.000579 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccA | 2 | 374 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 327 | 327 | B.1.36 | 0.047709 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 287 | 298 | B.1 | 0.002629 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccA | 6 | 298 | B.1 | 0.000055 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccG | 5 | 298 | B.1 | 0.000046 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 257 | 259 | AY.43 | 0.001139 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccA | 1 | 259 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccG | 1 | 259 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 217 | 217 | AY.68 | 0.059403 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 208 | 208 | B.1.177 | 0.002739 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 177 | 177 | AY.103 | 0.001099 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 149 | 149 | B.1.2 | 0.001312 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 148 | 148 | AY.119 | 0.005226 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 140 | 142 | AY.102 | 0.003712 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccA | 1 | 142 | AY.102 | 0.000027 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccG | 1 | 142 | AY.102 | 0.000027 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 116 | 116 | B.1.637 | 0.008476 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 110 | 110 | B.1.36.18 | 0.046218 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 104 | 104 | B.1.1.428 | 0.981132 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 100 | 100 | AY.4.2 | 0.002169 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 76 | 76 | AY.75.1 | 0.013704 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 72 | 72 | B.1.1.375 | 0.857143 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 58 | 66 | AY.25 | 0.000349 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccA | 7 | 66 | AY.25 | 0.000042 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccG | 1 | 66 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 65 | 65 | AY.9 | 0.004394 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 60 | 61 | AY.39 | 0.001483 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccA | 1 | 61 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 55 | 56 | P.1 | 0.000866 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccA | 1 | 56 | P.1 | 0.000016 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 48 | 49 | AY.29 | 0.000757 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccA | 1 | 49 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 45 | 49 | B.1.1 | 0.000816 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccG | 4 | 49 | B.1.1 | 0.000073 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 48 | 48 | P.7 | 0.209607 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 47 | 47 | AY.3 | 0.000467 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 34 | 44 | AY.117 | 0.002874 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccG | 10 | 44 | AY.117 | 0.000845 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 43 | 43 | B.1.427 | 0.002171 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 40 | 40 | AY.5 | 0.000826 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 39 | 39 | B.1.429 | 0.000918 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 38 | 38 | AY.21 | 0.072106 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 37 | 37 | B.1.221 | 0.002628 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 34 | 34 | AY.33 | 0.00227 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 34 | 34 | B.1.177.60 | 0.007427 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 33 | 33 | AY.45 | 0.004016 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 32 | 32 | AY.62 | 0.013943 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 31 | 31 | AY.75 | 0.001737 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 30 | 30 | B.1.351.2 | 0.009077 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 29 | 29 | B.1.334 | 0.527273 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 28 | 28 | AY.65 | 0.014925 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 27 | 27 | AY.13 | 0.004346 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 21 | 25 | B.1.351 | 0.000624 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccG | 3 | 25 | B.1.351 | 0.000089 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccA | 1 | 25 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 23 | 24 | B.1.1.519 | 0.000913 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccA | 1 | 24 | B.1.1.519 | 0.00004 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 24 | 24 | P.1.14 | 0.001147 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 22 | 23 | AY.16.1 | 0.010338 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccA | 1 | 23 | AY.16.1 | 0.00047 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 22 | 22 | B.1.1.181 | 0.1 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 21 | 21 | AY.46 | 0.002186 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 20 | 21 | AY.47 | 0.000622 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccA | 1 | 21 | AY.47 | 0.000031 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 21 | 21 | C.6 | 0.777778 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 19 | 20 | B.1.526 | 0.000447 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccA | 1 | 20 | B.1.526 | 0.000024 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 19 | 19 | AY.26 | 0.000538 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 19 | 19 | B.1.160 | 0.000593 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 18 | 18 | AY.59 | 0.009534 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 17 | 17 | AY.100 | 0.000782 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 17 | 17 | AY.24 | 0.007328 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 16 | 16 | AY.55 | 0.014679 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 14 | 14 | AY.9.2 | 0.000514 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 13 | 14 | B.1.243 | 0.000905 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccA | 1 | 14 | B.1.243 | 0.00007 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 13 | 13 | AY.6 | 0.000535 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 13 | 13 | AY.99.2 | 0.001198 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 12 | 12 | AY.113 | 0.001709 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 12 | 12 | AY.32 | 0.00639 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 12 | 12 | AY.34 | 0.001164 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 11 | 12 | AY.61 | 0.001153 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccA | 1 | 12 | AY.61 | 0.000105 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 11 | 11 | A | 0.004257 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 11 | 11 | B.1.1.317 | 0.004529 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 10 | 10 | AY.120 | 0.000372 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 10 | 10 | AY.20 | 0.000389 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 10 | 10 | B | 0.001278 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 10 | 10 | B.1.385 | 0.106383 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 10 | 10 | C.37 | 0.001161 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 9 | 9 | AY.1 | 0.003562 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 9 | 9 | AY.10 | 0.004769 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 9 | 9 | AY.5.3 | 0.003036 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 9 | 9 | AY.60 | 0.008443 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 9 | 9 | B.1.177.86 | 0.001651 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 8 | 8 | AY.90 | 0.005476 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 8 | 8 | B.1.1.222 | 0.001632 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 8 | 8 | B.1.1.318 | 0.002414 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 8 | 8 | B.1.258 | 0.000532 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 8 | 8 | B.1.573 | 0.04878 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 8 | 8 | B.1.621 | 0.000708 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 8 | 8 | P.2 | 0.001493 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 7 | 7 | AY.46.6 | 0.000505 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 7 | 7 | B.1.177.57 | 0.001967 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 7 | 7 | B.1.409 | 0.005469 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 7 | 7 | B.1.416 | 0.008883 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 7 | 7 | Q.1 | 0.000884 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 7 | 7 | R.1 | 0.00063 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 6 | 6 | AY.106 | 0.002009 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 6 | 6 | AY.110 | 0.000676 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 6 | 6 | AY.118 | 0.000376 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 6 | 6 | AY.23 | 0.000418 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 3 | 6 | AY.40 | 0.002893 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccA | 3 | 6 | AY.40 | 0.002893 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 6 | 6 | AY.54 | 0.000572 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 6 | 6 | AY.67 | 0.002786 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 6 | 6 | AY.87 | 0.004996 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 6 | 6 | B.1.1.214 | 0.000333 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 6 | 6 | B.1.218 | 0.030928 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 6 | 6 | B.1.596 | 0.000523 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 6 | 6 | B.1.617.1 | 0.000774 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 5 | 5 | AY.111 | 0.000916 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccG | 3 | 5 | AY.14 | 0.000264 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2 | 5 | AY.14 | 0.000176 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 5 | 5 | AY.46.5 | 0.000992 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 5 | 5 | AY.48 | 0.002326 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 5 | 5 | AY.51 | 0.004545 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 5 | 5 | AY.52 | 0.004072 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 5 | 5 | B.1.1.28 | 0.001556 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 5 | 5 | B.1.1.372 | 0.003444 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 5 | 5 | B.1.1.434 | 0.001743 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 5 | 5 | B.1.177.2 | 0.022727 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 5 | 5 | B.1.36.10 | 0.023923 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 5 | 5 | B.1.36.26 | 0.014286 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 5 | 5 | B.1.400 | 0.002145 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 4 | 4 | AY.109 | 0.002959 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 4 | 4 | AY.23.1 | 0.001669 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 4 | 4 | AY.39.1 | 0.000158 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 4 | 4 | AY.46.2 | 0.002541 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 4 | 4 | AY.88 | 0.003537 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 4 | 4 | AY.9.1 | 0.000335 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 4 | 4 | B.1.1.416 | 0.00362 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 4 | 4 | B.1.177.54 | 0.002426 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 4 | 4 | B.1.210 | 0.008529 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 4 | 4 | B.1.234 | 0.000528 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 4 | 4 | B.1.239 | 0.004884 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 4 | 4 | B.1.366 | 0.019512 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 4 | 4 | B.1.577 | 0.002749 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 4 | 4 | B.1.609 | 0.001918 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 4 | 4 | P.1.15 | 0.000929 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 4 | 4 | Q.4 | 0.001819 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 3 | 3 | A.29 | 0.015957 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 3 | 3 | AY.116.1 | 0.000934 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2 | 3 | AY.19 | 0.002281 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccA | 1 | 3 | AY.19 | 0.00114 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 3 | 3 | AY.4.4 | 0.001227 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 3 | 3 | AY.69 | 0.00056 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 3 | 3 | B.1.1.1 | 0.00098 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 3 | 3 | B.1.1.232 | 0.005445 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 3 | 3 | B.1.1.302 | 0.006224 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 3 | 3 | B.1.1.315 | 0.025424 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 3 | 3 | B.1.1.70 | 0.001023 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 3 | 3 | B.1.177.12 | 0.000455 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 3 | 3 | B.1.177.15 | 0.001893 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 3 | 3 | B.1.206 | 0.002447 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 3 | 3 | B.1.260 | 0.010033 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 3 | 3 | B.1.367 | 0.002377 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 3 | 3 | B.1.466.2 | 0.001174 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 3 | 3 | B.1.474 | 0.005703 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 3 | 3 | B.1.549 | 0.021583 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 3 | 3 | B.1.558 | 0.013699 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 3 | 3 | B.1.78 | 0.025641 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2 | 2 | AY.105 | 0.001286 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2 | 2 | AY.120.2 | 0.002571 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2 | 2 | AY.41 | 0.000588 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2 | 2 | AY.64 | 0.00119 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2 | 2 | AY.86 | 0.00166 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2 | 2 | AY.89 | 0.009804 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2 | 2 | AY.91 | 0.001461 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2 | 2 | AY.93 | 0.000546 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2 | 2 | AY.99.1 | 0.003106 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2 | 2 | B.1.1.161 | 0.007067 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2 | 2 | B.1.1.263 | 0.003115 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2 | 2 | B.1.1.326 | 0.003521 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2 | 2 | B.1.1.409 | 0.005666 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2 | 2 | B.1.1.54 | 0.006042 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2 | 2 | B.1.111 | 0.00235 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2 | 2 | B.1.167 | 0.015625 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2 | 2 | B.1.177.45 | 0.000762 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2 | 2 | B.1.177.52 | 0.003515 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2 | 2 | B.1.189 | 0.008584 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2 | 2 | B.1.237 | 0.00995 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2 | 2 | B.1.36.1 | 0.002281 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2 | 2 | B.1.36.22 | 0.002415 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 2 | B.1.369 | 0.000285 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccA | 1 | 2 | B.1.369 | 0.000285 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2 | 2 | B.1.416.1 | 0.003125 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2 | 2 | B.1.466 | 0.046512 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccA | 2 | 2 | B.1.511 | 0.068966 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2 | 2 | B.1.516 | 0.003914 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2 | 2 | B.1.548 | 0.071429 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2 | 2 | B.1.564 | 0.000852 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2 | 2 | B.1.588 | 0.00182 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2 | 2 | P.1.1 | 0.000635 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | A.28 | 0.002646 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.1.133 | 0.008475 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.1.270 | 0.010309 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.1.285 | 0.006536 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.1.328 | 0.016949 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.1.333 | 0.001076 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.1.376 | 0.005952 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.1.377 | 0.001381 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.1.406 | 0.006494 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.1.411 | 0.014706 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.1.429 | 0.004608 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.1.43 | 0.014925 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.104 | 0.00369 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.105 | 0.009615 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.13 | 0.002375 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.160.29 | 0.004219 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.160.33 | 0.004425 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccA | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.177.31 | 0.011494 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.221.4 | 0.004167 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.280 | 0.007143 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.403 | 0.003268 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.411 | 0.003704 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.466.1 | 0.007194 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.521 | 0.004975 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | C.28 | 0.04 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | C.31 | 0.017857 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | K.2 | 0.04 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | L.1 | 0.001905 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp2 | 568 | P568P | ccC | ccT | 1 | 1 | P.3 | 0.001595 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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