CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = P200S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2200P200SP380SnonsynCctTct242024180.9991741403-1405
ORF1ab/nsp2200P200SP380SnonsynCcTTcC242010.0004132231403-1405
ORF1ab/nsp2200P200SP380SnonsynCcTTcG242010.0004132231403-1405

Details of the mutation P200S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2200P200SCctTct24182420All0.000462
ORF1ab/nsp2200P200SCcTTcG12420All0
ORF1ab/nsp2200P200SCcTTcC12420All0
ORF1ab/nsp2200P200SCctTct15171517AY.570.995407
ORF1ab/nsp2200P200SCctTct245245B.1.1.70.000219
ORF1ab/nsp2200P200SCctTct225225AY.250.001353
ORF1ab/nsp2200P200SCctTct3333B.1.20.000291
ORF1ab/nsp2200P200SCctTct3030AY.40.000047
ORF1ab/nsp2200P200SCctTct2929B.1.1770.000382
ORF1ab/nsp2200P200SCctTct2727B.1.617.20.000102
ORF1ab/nsp2200P200SCctTct2525B.1.3590.568182
ORF1ab/nsp2200P200SCctTct1616B.1.177.180.018561
ORF1ab/nsp2200P200SCctTct1515AY.1030.000093
ORF1ab/nsp2200P200SCctTct1414P.1.10.004447
ORF1ab/nsp2200P200SCctTct1313AY.60.000535
ORF1ab/nsp2200P200SCctTct1313B.1.4290.000306
ORF1ab/nsp2200P200SCctTct1012AY.440.000061
ORF1ab/nsp2200P200SCcTTcC112AY.440.000006
ORF1ab/nsp2200P200SCcTTcG112AY.440.000006
ORF1ab/nsp2200P200SCctTct1212B.1.1.280.003735
ORF1ab/nsp2200P200SCctTct1111B.10.000101
ORF1ab/nsp2200P200SCctTct99B.1.177.40.0019
ORF1ab/nsp2200P200SCctTct77A.10.001973
ORF1ab/nsp2200P200SCctTct77AY.750.000392
ORF1ab/nsp2200P200SCctTct66B.1.258.170.000624
ORF1ab/nsp2200P200SCctTct55AY.260.000142
ORF1ab/nsp2200P200SCctTct55AY.430.000022
ORF1ab/nsp2200P200SCctTct55AY.600.00469
ORF1ab/nsp2200P200SCctTct55B.1.1.5190.000199
ORF1ab/nsp2200P200SCctTct55B.1.3510.000149
ORF1ab/nsp2200P200SCctTct55P.10.000079
ORF1ab/nsp2200P200SCctTct44AY.290.000063
ORF1ab/nsp2200P200SCctTct44AY.50.000083
ORF1ab/nsp2200P200SCctTct44B.1.177.210.000306
ORF1ab/nsp2200P200SCctTct44C.370.000464
ORF1ab/nsp2200P200SCctTct33A.2.50.001497
ORF1ab/nsp2200P200SCctTct33AY.30.00003
ORF1ab/nsp2200P200SCctTct33AY.46.60.000217
ORF1ab/nsp2200P200SCctTct33AY.620.001307
ORF1ab/nsp2200P200SCctTct33AY.75.10.000541
ORF1ab/nsp2200P200SCctTct33B.1.1.2140.000166
ORF1ab/nsp2200P200SCctTct33B.1.1.3840.071429
ORF1ab/nsp2200P200SCctTct33B.1.1.630.001157
ORF1ab/nsp2200P200SCctTct22AY.1180.000125
ORF1ab/nsp2200P200SCctTct22AY.1210.000271
ORF1ab/nsp2200P200SCctTct22AY.46.40.000329
ORF1ab/nsp2200P200SCctTct22AY.730.001331
ORF1ab/nsp2200P200SCctTct22B.1.10.000036
ORF1ab/nsp2200P200SCctTct22B.1.1.250.001137
ORF1ab/nsp2200P200SCctTct22B.1.1.2840.000215
ORF1ab/nsp2200P200SCctTct22B.1.1.3510.005587
ORF1ab/nsp2200P200SCctTct22B.1.1.3970.004505
ORF1ab/nsp2200P200SCctTct22B.1.1.700.000682
ORF1ab/nsp2200P200SCctTct22B.1.1600.000062
ORF1ab/nsp2200P200SCctTct22B.1.2340.000264
ORF1ab/nsp2200P200SCctTct22B.1.351.20.000605
ORF1ab/nsp2200P200SCctTct22B.1.36.180.00084
ORF1ab/nsp2200P200SCctTct22B.1.466.20.000782
ORF1ab/nsp2200P200SCctTct22B.1.5610.000794
ORF1ab/nsp2200P200SCctTct22C.10.004785
ORF1ab/nsp2200P200SCctTct22C.140.008658
ORF1ab/nsp2200P200SCctTct11A.23.10.000704
ORF1ab/nsp2200P200SCctTct11AY.1000.000046
ORF1ab/nsp2200P200SCctTct11AY.1100.000113
ORF1ab/nsp2200P200SCctTct11AY.1190.000035
ORF1ab/nsp2200P200SCctTct11AY.1200.000037
ORF1ab/nsp2200P200SCctTct11AY.130.000161
ORF1ab/nsp2200P200SCctTct11AY.160.00038
ORF1ab/nsp2200P200SCctTct11AY.240.000431
ORF1ab/nsp2200P200SCctTct11AY.340.000097
ORF1ab/nsp2200P200SCctTct11AY.370.000316
ORF1ab/nsp2200P200SCctTct11AY.39.10.00004
ORF1ab/nsp2200P200SCctTct11AY.4.20.000022
ORF1ab/nsp2200P200SCctTct11AY.4.30.000842
ORF1ab/nsp2200P200SCctTct11AY.4.40.000409
ORF1ab/nsp2200P200SCctTct11AY.410.000294
ORF1ab/nsp2200P200SCctTct11AY.450.000122
ORF1ab/nsp2200P200SCctTct11AY.460.000104
ORF1ab/nsp2200P200SCctTct11AY.530.000288
ORF1ab/nsp2200P200SCctTct11AY.540.000095
ORF1ab/nsp2200P200SCctTct11AY.690.000187
ORF1ab/nsp2200P200SCctTct11AY.9.20.000037
ORF1ab/nsp2200P200SCctTct11AY.920.000287
ORF1ab/nsp2200P200SCctTct11AY.980.000079
ORF1ab/nsp2200P200SCctTct11B.1.1.1570.000913
ORF1ab/nsp2200P200SCctTct11B.1.1.2220.000204
ORF1ab/nsp2200P200SCctTct11B.1.1.3170.000412
ORF1ab/nsp2200P200SCctTct11B.1.1.3750.011905
ORF1ab/nsp2200P200SCctTct11B.1.1.3980.003226
ORF1ab/nsp2200P200SCctTct11B.1.1110.001175
ORF1ab/nsp2200P200SCctTct11B.1.160.170.001701
ORF1ab/nsp2200P200SCctTct11B.1.177.160.000664
ORF1ab/nsp2200P200SCctTct11B.1.177.420.000894
ORF1ab/nsp2200P200SCctTct11B.1.177.580.001332
ORF1ab/nsp2200P200SCctTct11B.1.2100.002132
ORF1ab/nsp2200P200SCctTct11B.1.230.006061
ORF1ab/nsp2200P200SCctTct11B.1.258.110.000396
ORF1ab/nsp2200P200SCctTct11B.1.2600.003344
ORF1ab/nsp2200P200SCctTct11B.1.360.000146
ORF1ab/nsp2200P200SCctTct11B.1.36.310.001751
ORF1ab/nsp2200P200SCctTct11B.1.36.380.001642
ORF1ab/nsp2200P200SCctTct11B.1.4000.000429
ORF1ab/nsp2200P200SCctTct11B.1.5260.000024
ORF1ab/nsp2200P200SCctTct11B.1.5960.000087
ORF1ab/nsp2200P200SCctTct11B.1.617.10.000129
ORF1ab/nsp2200P200SCctTct11B.1.6210.000089
ORF1ab/nsp2200P200SCctTct11D.20.000075
ORF1ab/nsp2200P200SCctTct11Q.10.000126
ORF1ab/nsp2200P200SCctTct11Q.80.000165