CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = P200L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2200P200LP380LnonsyncCtcTt17000169780.9987061403-1405
ORF1ab/nsp2200P200LP380LnonsyncCTcTC17000210.001235291403-1405
ORF1ab/nsp2200P200LP380LnonsyncCTcTG1700010.00005882351403-1405

Details of the mutation P200L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2200P200LcCtcTt1697817000All0.003247
ORF1ab/nsp2200P200LcCTcTC2117000All0.000004
ORF1ab/nsp2200P200LcCTcTG117000All0
ORF1ab/nsp2200P200LcCtcTt1194011961AY.230.83281
ORF1ab/nsp2200P200LcCTcTC2111961AY.230.001465
ORF1ab/nsp2200P200LcCtcTt23912391AY.23.10.997913
ORF1ab/nsp2200P200LcCtcTt722722B.1.3510.021463
ORF1ab/nsp2200P200LcCtcTt578578AY.40.0009
ORF1ab/nsp2200P200LcCtcTt273273AY.1160.078291
ORF1ab/nsp2200P200LcCtcTt201201B.1.1.70.00018
ORF1ab/nsp2200P200LcCtcTt8484AY.440.000511
ORF1ab/nsp2200P200LcCtcTt8181AY.1200.003011
ORF1ab/nsp2200P200LcCtcTt6161P.10.000961
ORF1ab/nsp2200P200LcCtcTt4849B.1.20.000423
ORF1ab/nsp2200P200LcCTcTG149B.1.20.000009
ORF1ab/nsp2200P200LcCtcTt4343B.1.177.150.027129
ORF1ab/nsp2200P200LcCtcTt3737B.1.617.20.000139
ORF1ab/nsp2200P200LcCtcTt3333AY.430.000146
ORF1ab/nsp2200P200LcCtcTt3131P.1.40.030273
ORF1ab/nsp2200P200LcCtcTt2929AY.250.000174
ORF1ab/nsp2200P200LcCtcTt2727B.1.4290.000635
ORF1ab/nsp2200P200LcCtcTt2323B.10.000211
ORF1ab/nsp2200P200LcCtcTt2222AY.240.009483
ORF1ab/nsp2200P200LcCtcTt2121AY.1030.00013
ORF1ab/nsp2200P200LcCtcTt1515AY.370.004741
ORF1ab/nsp2200P200LcCtcTt1313B.1.360.001897
ORF1ab/nsp2200P200LcCtcTt1212B.1.1600.000374
ORF1ab/nsp2200P200LcCtcTt1212B.1.5260.000282
ORF1ab/nsp2200P200LcCtcTt1010AY.420.000402
ORF1ab/nsp2200P200LcCtcTt99AY.200.00035
ORF1ab/nsp2200P200LcCtcTt99B.1.1.10.00294
ORF1ab/nsp2200P200LcCtcTt99B.1.1.2310.027864
ORF1ab/nsp2200P200LcCtcTt99B.1.1.5190.000357
ORF1ab/nsp2200P200LcCtcTt88AY.1170.000676
ORF1ab/nsp2200P200LcCtcTt88AY.330.000534
ORF1ab/nsp2200P200LcCtcTt88AY.98.10.000387
ORF1ab/nsp2200P200LcCtcTt77AY.1020.000186
ORF1ab/nsp2200P200LcCtcTt77B.1.10.000127
ORF1ab/nsp2200P200LcCtcTt66AY.1190.000212
ORF1ab/nsp2200P200LcCtcTt66AY.460.000624
ORF1ab/nsp2200P200LcCtcTt55AY.590.002648
ORF1ab/nsp2200P200LcCtcTt55B.1.1770.000066
ORF1ab/nsp2200P200LcCtcTt55B.1.2210.000355
ORF1ab/nsp2200P200LcCtcTt55B.1.466.20.001956
ORF1ab/nsp2200P200LcCtcTt55B.1.5750.001517
ORF1ab/nsp2200P200LcCtcTt55B.1.6210.000443
ORF1ab/nsp2200P200LcCtcTt55C.10.011962
ORF1ab/nsp2200P200LcCtcTt55C.370.00058
ORF1ab/nsp2200P200LcCtcTt44AY.260.000113
ORF1ab/nsp2200P200LcCtcTt44AY.470.000124
ORF1ab/nsp2200P200LcCtcTt44B.1.2100.008529
ORF1ab/nsp2200P200LcCtcTt44B.1.4710.010929
ORF1ab/nsp2200P200LcCtcTt44B.1.5960.000349
ORF1ab/nsp2200P200LcCtcTt44P.1.140.000191
ORF1ab/nsp2200P200LcCtcTt33A.2.50.001497
ORF1ab/nsp2200P200LcCtcTt33AY.1180.000188
ORF1ab/nsp2200P200LcCtcTt33AY.920.000862
ORF1ab/nsp2200P200LcCtcTt33B.1.1.4340.001046
ORF1ab/nsp2200P200LcCtcTt33B.1.1.700.001023
ORF1ab/nsp2200P200LcCtcTt33B.1.177.460.002755
ORF1ab/nsp2200P200LcCtcTt33B.1.2340.000396
ORF1ab/nsp2200P200LcCtcTt33B.1.4000.001287
ORF1ab/nsp2200P200LcCtcTt33R.10.00027
ORF1ab/nsp2200P200LcCtcTt22A.20.001324
ORF1ab/nsp2200P200LcCtcTt22AY.1060.00067
ORF1ab/nsp2200P200LcCtcTt22AY.4.20.000043
ORF1ab/nsp2200P200LcCtcTt22AY.4.30.001684
ORF1ab/nsp2200P200LcCtcTt22AY.46.30.001867
ORF1ab/nsp2200P200LcCtcTt22AY.50.000041
ORF1ab/nsp2200P200LcCtcTt22AY.650.001066
ORF1ab/nsp2200P200LcCtcTt22AY.7.10.000225
ORF1ab/nsp2200P200LcCtcTt22AY.750.000112
ORF1ab/nsp2200P200LcCtcTt22AY.760.009662
ORF1ab/nsp2200P200LcCtcTt22AY.9.20.000073
ORF1ab/nsp2200P200LcCtcTt22AY.99.20.000184
ORF1ab/nsp2200P200LcCtcTt22B0.000256
ORF1ab/nsp2200P200LcCtcTt22B.1.1.280.000622
ORF1ab/nsp2200P200LcCtcTt22B.1.177.860.000367
ORF1ab/nsp2200P200LcCtcTt22B.1.2430.000139
ORF1ab/nsp2200P200LcCtcTt22B.1.2580.000133
ORF1ab/nsp2200P200LcCtcTt22B.1.4270.000101
ORF1ab/nsp2200P200LcCtcTt22B.1.438.10.000215
ORF1ab/nsp2200P200LcCtcTt22B.1.5030.004975
ORF1ab/nsp2200P200LcCtcTt22B.1.5170.000854
ORF1ab/nsp2200P200LcCtcTt22B.1.6370.000146
ORF1ab/nsp2200P200LcCtcTt22P.30.00319
ORF1ab/nsp2200P200LcCtcTt22Q.70.002222
ORF1ab/nsp2200P200LcCtcTt11A.10.000282
ORF1ab/nsp2200P200LcCtcTt11A.250.018182
ORF1ab/nsp2200P200LcCtcTt11A.270.001656
ORF1ab/nsp2200P200LcCtcTt11AU.20.002421
ORF1ab/nsp2200P200LcCtcTt11AY.100.00053
ORF1ab/nsp2200P200LcCtcTt11AY.1000.000046
ORF1ab/nsp2200P200LcCtcTt11AY.1130.000142
ORF1ab/nsp2200P200LcCtcTt11AY.160.00038
ORF1ab/nsp2200P200LcCtcTt11AY.30.00001
ORF1ab/nsp2200P200LcCtcTt11AY.300.000396
ORF1ab/nsp2200P200LcCtcTt11AY.4.2.10.000149
ORF1ab/nsp2200P200LcCtcTt11AY.450.000122
ORF1ab/nsp2200P200LcCtcTt11AY.46.10.001027
ORF1ab/nsp2200P200LcCtcTt11AY.60.000041
ORF1ab/nsp2200P200LcCtcTt11AY.700.000209
ORF1ab/nsp2200P200LcCtcTt11AY.90.000068
ORF1ab/nsp2200P200LcCtcTt11AY.9.10.000084
ORF1ab/nsp2200P200LcCtcTt11AZ.30.00152
ORF1ab/nsp2200P200LcCtcTt11B.1.1.1480.008772
ORF1ab/nsp2200P200LcCtcTt11B.1.1.2140.000055
ORF1ab/nsp2200P200LcCtcTt11B.1.1.3030.002762
ORF1ab/nsp2200P200LcCtcTt11B.1.1.3060.000438
ORF1ab/nsp2200P200LcCtcTt11B.1.1.330.000421
ORF1ab/nsp2200P200LcCtcTt11B.1.1.3890.006061
ORF1ab/nsp2200P200LcCtcTt11B.1.1.4090.002833
ORF1ab/nsp2200P200LcCtcTt11B.1.177.210.000076
ORF1ab/nsp2200P200LcCtcTt11B.1.177.620.001192
ORF1ab/nsp2200P200LcCtcTt11B.1.177.730.000566
ORF1ab/nsp2200P200LcCtcTt11B.1.258.170.000104
ORF1ab/nsp2200P200LcCtcTt11B.1.2790.000514
ORF1ab/nsp2200P200LcCtcTt11B.1.351.30.000876
ORF1ab/nsp2200P200LcCtcTt11B.1.3670.000792
ORF1ab/nsp2200P200LcCtcTt11B.1.4150.014286
ORF1ab/nsp2200P200LcCtcTt11B.1.4250.002994
ORF1ab/nsp2200P200LcCtcTt11B.1.4990.00105
ORF1ab/nsp2200P200LcCtcTt11B.1.5250.000113
ORF1ab/nsp2200P200LcCtcTt11B.1.5950.000261
ORF1ab/nsp2200P200LcCtcTt11B.420.033333
ORF1ab/nsp2200P200LcCtcTt11B.570.015152
ORF1ab/nsp2200P200LcCtcTt11C.270.018519
ORF1ab/nsp2200P200LcCtcTt11P.1.120.000484
ORF1ab/nsp2200P200LcCtcTt11P.1.160.000374
ORF1ab/nsp2200P200LcCtcTt11P.20.000187
ORF1ab/nsp2200P200LcCtcTt11Q.10.000126
ORF1ab/nsp2200P200LcCtcTt11Q.30.000145
ORF1ab/nsp2200P200LcCtcTt11Q.80.000165