CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 191 | P191L | P371L | nonsyn | cCa | cTa | 1540 | 1538 | 0.998701 | 1376-1378 |
ORF1ab/nsp2 | 191 | P191L | P371L | nonsyn | cCA | cTG | 1540 | 2 | 0.0012987 | 1376-1378 |
Details of the mutation P191L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1538 | 1540 | All | 0.000294 |
ORF1ab/nsp2 | 191 | P191L | cCA | cTG | 2 | 1540 | All | 0 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 256 | 256 | B.1.1.7 | 0.000229 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 144 | 144 | AY.4 | 0.000224 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 116 | 116 | B.1.36 | 0.016924 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 92 | 92 | AY.119 | 0.003248 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 70 | 70 | B.1.177.83 | 0.103704 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 65 | 65 | AY.75 | 0.003641 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 54 | 54 | B.1.1.320 | 0.981818 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 49 | 49 | B.1.177 | 0.000645 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 45 | 45 | B.1.617.2 | 0.000169 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 42 | 42 | B.1 | 0.000385 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 36 | 36 | B.1.497 | 0.011331 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 34 | 34 | AY.20 | 0.001321 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 33 | 33 | AY.44 | 0.000201 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 32 | 32 | B.1.1 | 0.000581 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 31 | 31 | AY.43 | 0.000137 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 27 | 27 | B.1.160 | 0.000842 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 25 | 25 | B.1.1.37 | 0.004822 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 24 | 24 | B.1.391 | 0.027057 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 19 | 19 | B.1.1.519 | 0.000755 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 18 | 18 | B.1.36.29 | 0.009312 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 16 | 16 | AY.3.1 | 0.001364 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 16 | 16 | AY.4.5 | 0.00172 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 15 | 15 | AY.3 | 0.000149 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 12 | 12 | AY.103 | 0.000075 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 11 | 11 | P.1 | 0.000173 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 10 | 10 | AY.47 | 0.000311 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 10 | 10 | AY.9.2 | 0.000367 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 10 | 10 | P.1.14 | 0.000478 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 9 | 9 | AY.61 | 0.000943 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 8 | 8 | AY.120 | 0.000297 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 8 | 8 | AY.25 | 0.000048 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 8 | 8 | B.1.243 | 0.000557 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 8 | 8 | L.4 | 0.4 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 7 | 7 | AY.36 | 0.001037 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 7 | 7 | B.1.177.81 | 0.001325 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 7 | 7 | B.1.221 | 0.000497 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 6 | 6 | AY.102 | 0.000159 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 6 | 6 | AY.4.2 | 0.00013 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 6 | 6 | B.1.536 | 0.142857 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 6 | 6 | R.1 | 0.00054 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 5 | 5 | AY.70 | 0.001043 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 5 | 5 | B.1.177.2 | 0.022727 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 5 | 5 | B.1.177.8 | 0.003762 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 5 | 5 | B.1.453 | 0.016181 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 5 | 5 | B.1.474 | 0.009506 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 5 | 5 | P.2 | 0.000933 |
ORF1ab/nsp2 | 191 | P191L | cCA | cTG | 2 | 4 | 0.111111 | |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 2 | 4 | 0.111111 | |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 4 | 4 | B.1.1.434 | 0.001394 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 3 | 3 | AY.59 | 0.001589 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 3 | 3 | B.1.406 | 0.018182 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 2 | 2 | A.2 | 0.001324 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 2 | 2 | AY.39.1.1 | 0.001449 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 2 | 2 | B.1.1.50 | 0.001358 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 2 | 2 | B.1.462 | 0.014493 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 2 | 2 | B.1.91 | 0.004149 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | AY.5.2 | 0.002463 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | B.1.1.120 | 0.033333 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | B.1.1.135 | 0.004695 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | B.1.1.152 | 0.04 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | B.1.1.177 | 0.019231 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | B.1.1.297 | 0.002237 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | B.1.12 | 0.008 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | B.1.160.11 | 0.005714 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | B.1.160.17 | 0.001701 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | B.1.177.30 | 0.002513 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | B.1.478 | 0.011765 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | B.1.504 | 0.03125 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | P.1.17.1 | 0.000875 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp2 | 191 | P191L | cCa | cTa | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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