CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 181 | P181P | P361P | syn | ccC | ccT | 6330 | 6159 | 0.972986 | 1346-1348 |
ORF1ab/nsp2 | 181 | P181P | P361P | syn | ccC | ccA | 6330 | 165 | 0.0260663 | 1346-1348 |
ORF1ab/nsp2 | 181 | P181P | P361P | syn | ccC | ccG | 6330 | 6 | 0.000947867 | 1346-1348 |
Details of the mutation P181P within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 6159 | 6330 | All | 0.001178 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccA | 165 | 6330 | All | 0.000032 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccG | 6 | 6330 | All | 0.000001 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1126 | 1138 | AY.4 | 0.001753 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccA | 12 | 1138 | AY.4 | 0.000019 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 678 | 687 | B.1.1.7 | 0.000607 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccA | 8 | 687 | B.1.1.7 | 0.000007 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccG | 1 | 687 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 543 | 543 | B.1.1.153 | 0.594743 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 423 | 424 | B.1.2 | 0.003725 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccA | 1 | 424 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 308 | 308 | AY.44 | 0.001875 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 280 | 282 | AY.43 | 0.001241 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccA | 2 | 282 | AY.43 | 0.000009 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 204 | 211 | B.1.617.2 | 0.000768 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccA | 7 | 211 | B.1.617.2 | 0.000026 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 196 | 201 | AY.103 | 0.001217 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccA | 3 | 201 | AY.103 | 0.000019 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccG | 2 | 201 | AY.103 | 0.000012 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 141 | 141 | B.1.438.1 | 0.015124 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 112 | 112 | B.1.1.297 | 0.250559 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 106 | 107 | B.1.160 | 0.003306 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccA | 1 | 107 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 106 | 106 | AY.119 | 0.003743 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 104 | 104 | B.1.595 | 0.02714 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 102 | 102 | P.1 | 0.001607 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 97 | 100 | AY.25 | 0.000583 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccA | 3 | 100 | AY.25 | 0.000018 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 75 | 80 | B.1 | 0.000687 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccA | 5 | 80 | B.1 | 0.000046 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 75 | 75 | B.1.258.17 | 0.007798 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 74 | 74 | B.1.429 | 0.001741 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 70 | 71 | B.1.1 | 0.00127 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccA | 1 | 71 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 64 | 64 | B.1.177 | 0.000843 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 59 | 59 | P.1.4 | 0.057617 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 54 | 56 | B.1.351 | 0.001605 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccA | 2 | 56 | B.1.351 | 0.000059 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 44 | 44 | B.1.243 | 0.003062 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 39 | 39 | AY.39 | 0.000964 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccA | 33 | 37 | P.1.7 | 0.010536 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 4 | 37 | P.1.7 | 0.001277 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 32 | 33 | B.1.1.28 | 0.00996 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccA | 1 | 33 | B.1.1.28 | 0.000311 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 33 | 33 | B.1.471 | 0.090164 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 26 | 32 | AY.3 | 0.000259 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccA | 5 | 32 | AY.3 | 0.00005 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccG | 1 | 32 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 32 | 32 | AY.4.1 | 0.023599 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 32 | 32 | AY.46.3 | 0.029879 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 29 | 29 | AY.64 | 0.017262 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 28 | 28 | B.1.234 | 0.003694 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccA | 13 | 25 | AY.75 | 0.000728 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 12 | 25 | AY.75 | 0.000672 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 21 | 22 | AY.26 | 0.000595 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccG | 1 | 22 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 22 | 22 | AY.85 | 0.009398 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 20 | 20 | AY.5 | 0.000413 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 20 | 20 | B.1.177.60 | 0.004369 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 20 | 20 | B.1.621 | 0.00177 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 16 | 19 | AY.100 | 0.000736 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccA | 3 | 19 | AY.100 | 0.000138 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 13 | 18 | AY.102 | 0.000345 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccA | 5 | 18 | AY.102 | 0.000133 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 18 | 18 | AY.32 | 0.009585 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 17 | 17 | AY.4.2 | 0.000369 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 17 | 17 | B.1.1.63 | 0.006559 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 13 | 16 | AY.113 | 0.001851 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccA | 3 | 16 | AY.113 | 0.000427 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 16 | 16 | AY.116.1 | 0.004983 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 15 | 15 | AY.98 | 0.001185 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 15 | 15 | B.1.111 | 0.017626 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccA | 12 | 14 | AY.118 | 0.000752 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 2 | 14 | AY.118 | 0.000125 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 14 | 14 | B.1.177.78 | 0.135922 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 14 | 14 | B.1.596 | 0.00122 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 12 | 12 | AY.29 | 0.000189 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 12 | 12 | B.1.221 | 0.000852 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 10 | 12 | B.1.427 | 0.000505 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccA | 2 | 12 | B.1.427 | 0.000101 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 12 | 12 | Y.1 | 0.153846 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccA | 10 | 11 | AY.30 | 0.003957 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 11 | AY.30 | 0.000396 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 11 | 11 | AY.33 | 0.000735 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 11 | 11 | AY.61 | 0.001153 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 11 | 11 | B.1.177.44 | 0.005708 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 7 | 10 | AY.111 | 0.001282 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccA | 3 | 10 | AY.111 | 0.000549 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 10 | 10 | AY.117 | 0.000845 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 9 | 10 | AY.23 | 0.000628 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccG | 1 | 10 | AY.23 | 0.00007 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 10 | 10 | B.1.377 | 0.045662 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 8 | 9 | AY.20 | 0.000311 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccA | 1 | 9 | AY.20 | 0.000039 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 9 | 9 | AY.98.1 | 0.000436 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 9 | 9 | B.1.1.216 | 0.008014 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 9 | 9 | B.1.1.326 | 0.015845 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 9 | 9 | B.1.22 | 0.011858 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 9 | 9 | B.1.36 | 0.001313 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 8 | 8 | B.1.177.73 | 0.00453 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 8 | 8 | B.1.351.3 | 0.007011 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 8 | 8 | B.1.617.1 | 0.001032 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 7 | 7 | AY.16 | 0.002658 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 7 | 7 | AY.9.1 | 0.000586 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 7 | 7 | AY.99.2 | 0.000645 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccA | 6 | 7 | B.1.1.523 | 0.009375 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 7 | B.1.1.523 | 0.001563 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 7 | 7 | B.1.400 | 0.003003 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 7 | 7 | C.37 | 0.000812 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 7 | 7 | P.1.14 | 0.000335 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 4 | 6 | AY.47 | 0.000124 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccA | 2 | 6 | AY.47 | 0.000062 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 6 | 6 | B.1.1.277 | 0.004552 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 6 | 6 | B.1.526 | 0.000141 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 5 | 5 | AY.42 | 0.000201 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 5 | 5 | AY.46.4 | 0.000823 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 5 | 5 | AY.54 | 0.000477 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 4 | 5 | B | 0.000511 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccA | 1 | 5 | B | 0.000128 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 5 | 5 | B.1.1.176 | 0.002197 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 5 | 5 | B.1.1.25 | 0.002843 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 5 | 5 | B.1.1.306 | 0.002192 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 5 | 5 | B.1.1.519 | 0.000199 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 5 | 5 | B.1.177.21 | 0.000382 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 5 | 5 | B.1.177.5 | 0.006211 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 5 | 5 | B.1.177.62 | 0.005959 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccA | 5 | 5 | B.1.448 | 0.013123 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 5 | 5 | B.1.623 | 0.002682 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 4 | 4 | A.28 | 0.010582 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 4 | 4 | AY.13 | 0.000644 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 4 | 4 | AY.16.1 | 0.00188 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 4 | 4 | AY.46 | 0.000416 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 4 | 4 | B.1.1.1 | 0.001307 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 4 | 4 | B.1.1.280 | 0.012346 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 4 | 4 | P.1.15 | 0.000929 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 4 | 4 | Q.8 | 0.00066 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 3 | 3 | AY.7.1 | 0.000338 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 2 | 3 | AY.9 | 0.000135 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccA | 1 | 3 | AY.9 | 0.000068 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 3 | 3 | B.1.1.10 | 0.003344 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 3 | 3 | B.1.1.308 | 0.035294 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 3 | 3 | B.1.1.50 | 0.002037 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 3 | 3 | B.1.177.16 | 0.001993 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 3 | 3 | B.1.177.35 | 0.002073 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 3 | 3 | B.1.177.86 | 0.00055 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 3 | 3 | B.1.241 | 0.002435 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 3 | 3 | B.1.265 | 0.003812 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 2 | 3 | B.1.349 | 0.00143 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccA | 1 | 3 | B.1.349 | 0.000715 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 3 | 3 | B.1.366 | 0.014634 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 3 | 3 | B.1.497 | 0.000944 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 3 | 3 | C.36 | 0.002732 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 3 | 3 | P.1.17 | 0.000485 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 2 | 3 | Q.3 | 0.00029 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccA | 1 | 3 | Q.3 | 0.000145 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 2 | 2 | A.1 | 0.000564 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 2 | 2 | AL.1 | 0.025974 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 2 | 2 | AY.10 | 0.00106 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 2 | AY.105 | 0.000643 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccA | 1 | 2 | AY.105 | 0.000643 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 2 | 2 | AY.23.1 | 0.000835 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccA | 1 | 2 | AY.28 | 0.00189 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 2 | AY.28 | 0.00189 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 2 | 2 | AY.29.1 | 0.000441 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 2 | 2 | AY.88 | 0.001768 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 2 | 2 | B.1.1.174 | 0.006757 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccA | 1 | 2 | B.1.1.222 | 0.000204 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 2 | B.1.1.222 | 0.000204 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 2 | 2 | B.1.1.291 | 0.001485 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 2 | 2 | B.1.1.34 | 0.026316 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 2 | 2 | B.1.1.369 | 0.000892 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 2 | 2 | B.1.1.442 | 0.037037 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 2 | 2 | B.1.110 | 0.00905 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 2 | 2 | B.1.142 | 0.005797 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 2 | 2 | B.1.160.28 | 0.005848 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 2 | 2 | B.1.270 | 0.011236 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 2 | 2 | B.1.428.2 | 0.066667 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 2 | 2 | B.1.433 | 0.00639 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 2 | 2 | B.1.538 | 0.016129 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 2 | 2 | B.1.565 | 0.001621 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 2 | 2 | B.1.574 | 0.004301 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 2 | 2 | B.1.588 | 0.00182 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 2 | 2 | B.1.590 | 0.009091 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 2 | 2 | B.1.636 | 0.013423 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 2 | 2 | P.5 | 0.027397 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 2 | 2 | P.6 | 0.006289 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccA | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | A.29 | 0.005319 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | A.30 | 0.142857 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccA | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | AY.17 | 0.008197 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccA | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccA | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.1.229 | 0.005747 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.1.285 | 0.006536 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccA | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccA | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.1.336 | 0.016667 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.1.371 | 0.010417 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.1.404 | 0.015873 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.1.419 | 0.007407 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.1.44 | 0.00241 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccA | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.115 | 0.021739 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.160.31 | 0.008065 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccA | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.177.41 | 0.0025 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.177.52 | 0.001757 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.3 | 0.002618 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.337 | 0.005587 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.408 | 0.00369 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | B.45 | 0.003831 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | C.4 | 0.01 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccA | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp2 | 181 | P181P | ccC | ccT | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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